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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0684200 |
| Transcript ID | LotjaGi1g1v0684200.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease ATP-binding subunit ClpB; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A1J7GIN0|A0A1J7GIN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125108085..125113398) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAGCTAACATGCTTCACCAATTCAGGAATCATGTCTAGGGTTTTGGCTCAGTCAATCAATATCCCTGGCCTAGTGGC CGGGCGAACGCACGGTCGTAATAACAGGTCCACGAAGTCGAAAAGACCTGTCAAAATGATGTATACCACCTTGCAAGCTC CTGCACTAAGATTGTCAGGTTTCTCGGGCCTGCGTAGTTTTAATAATTTGGATACTATGTTGAGACCTGGACTAGATTTT CATTCTAAGGTGTTCGCTACTACAACTATGTCTCGTAAGGCGAGGGCTAGCAGATGCGTACCGAAAGCCATGTTTGAGCG TTTCACGGAGAAAGCAATCAAAGTGATTATGCTTGCCCAGGAGGAGGCGAGACGGATGGGTCATAATTTTGTTGGGACGG AACAGGTCCTGTTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTTCTCAAGGCTATGGGTATTAGCCTTAAA GATGCACGTGTGGAAGTGGAAAAGATCATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGC TAAGCGTGTTTTGGAACTCTCGCTGGAGGAGGCTCGTCTTCTTGGTAAATGCTGTCTTTCCTTTATCCATGAAGTGTTTT TATTGATGAAAATTTTCTTCCTTGTAATCAACCTTACCAATTTGCCTCTTTTTTTTTTTCTTTGTTGTTTGAAAGAAGGT GGAAGTGATTTGGTTATATTATATTTGTTCTGGTGCATTTATCTATTTTACTTGGAGAGTAACCTAGGTTTTGATGATTT ATGGGAAAATGAGGGAAAAAGTAAAAAGATGAGAATTTTCTTTTTTTGTAATCAACTGTCCATTTCTGATCAGCTTTCCA TGGTTTTCTCTTTGGCTTTTGTCGTTTGGAAGAATGTAGAAGTGATTTGATTACATTTGGACATTTGGTTCTGTGCATTT ATCTATTTTACTTGAAGAGTCACATAGGTTTTGATGATTTTATAGAAAAAAAAAGAGGAAGATAGTAACAGAGGATCGGT AAACTAGTAAACTACCCCACCGTATAATGAGTTACAGAGAGAAGAGAAGGATCATGCACTGGATTCTCATTCCAAAGGCT CTAAAACCTTTCATTCCTAGTGAGCCATTGCTAGATGATGCTATCTAGCCTTTTTTTTTTCAAAATGATTCATCTAAATG GGCTATCATGATGTCAAATATTACTTGGAGTTGGCAAATGTTTCTCAGTGCCCTCTCTGGCAGTCAATATTACTACGTGT TATTGGCATGATAATAGTGTTGAAGAAAGTTATTAAAGGTATAAACATTCCAAGGATGACTTAATTTATTGCTGCCTTGA TTGATCTGATTGTTGACTAATTTGCTTTAAATGTGTTCAAAGTGAGTTGGAGTTTATCTATGAATTTGTTTATTTATTTA TTCATTCATTTTTTGGCTGGTCTTTCTGTTCTTTCTTCTATTATTTTATTTTGGGATGGGTCTATGCAATATTCCGTTAT CACTCAATGAAACGTTTAGGCTTACTCCTTGAAATTTTCAGGTCACAACTATATTGGGTCTGAGCACTTGCTTCTGGGTC TTCTTCGAGAGGGGGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGTGCTGATCCTTCTAATATTCGCTCTCAGGTT TCTATTGTATCCTCATTTATTCATTTTCCCGCACACTATATGGACATATCTTTTATCCTTTTTTTTAATCTTGTACTCCA TTGAGTGAGAACAGGTTATTCGCATGGTTGGTGAGGGTGCTGACACTATTGCTGCTACTGTTGGCCCCGGAAGTAGTAGC AATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGTAATTACCAGTTCCTAGTTTTC TTCACGACATATGGTATAGTTTTTTTGTGTGTTTAAAAGCATACTTATTTTCTTCCGAAATCAAAATCTCAGGGAAAATT AGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGCGTCACTCAAATTTTGGGCCGTCGTACCAAAAATAATCCTTGTC TTATTGGCGAGCCTGGTGTTGGAAAGACAGCTATTGCCGAAGGTCTTGCTCAACGGATTGCAACTGGCGATGTTCCTGAA ACCCTAGAGGGAAAGAAGGTTAGTATGAATTATTTTACATTGGTTTCATTAAGGGAATTTTCTATTCCATTTTCAGCTTT ATCATCAACTTGCTTGGAGCACCCTGCCTTATTTTCAGTCATTTCATTTGTGAGATTAATTTTGCATTTGTATTTGATAA GTATTGAATCTATTGATTAAATTCTTGGATTTGGTATTTTATCACACTTTTGGGGATCCTGAATAATGTTAGTTTTGTCT ATGATTTAGGTAATAACCCTTGATATGGGTCTACTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGGTTGAA GAAGCTAATGGAGGAAATCAAACAAAGTGATGATATAATCCTTTTCATTGATGAAGTTCACACACTAATTGGAGCTGGAG CAGCTGAAGGGGCGATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGGGAACTACAGGTCATATTTCCCTTG ACGGCTTGACGTGTTCAAAATATATTTCCTTTTGATTCTGACCTCAAATTCATTTTTTTTGTTGTTGTTGGGCTAGGGGT TTCATTTTATATACCCTATCCTTGTCATCAATCATATCTATCAATTATCTTGTTCCTTCATGGCCAATGCTCGCCTGCAT TGGTTGACGGTGAATAAGTTACTAAATCAAGTTTCTTCTCTTGCGTTGTGCTTGTGCACAAATCCCCATTTTTTCCAATA TGCTTTGTTAGTTTTGACTTTTGACAACAATGTATATTTTAGTTTTTTTTACTATGAAGGTGTTTTGCTAGCTTGTCTAA TATATTTTAGTTTTTAAATCTTGTACCTTGTACCCGTACCTGGTACCGGTACCGTAGCTGTATCATTGCAACTTAGATGA TCATGGCAGACTTATGGTGAAATGTGAAGACATATGGTTATATGATAATATCTATGCTAAACTTGTCACTATTGCTCATT TGGAACTGTTCTAAAAAAATGACTGCGTATTATGCAGTGTATAGGAGCCACAACACTGGATGAATACAGGAAGCACATTG AAAAAGATCCAGCTTTGGAAAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGGATGAAACCATACAAATACTG AAAGGACTTAGAGAACGCTATGAGATTCACCACAAGCTCCGCTATACAGATGATGCTCTTGTAGCTGCTGCACATCTGTC ATATCAATATATCAGGTTTATCATAATTTATACTTCTGCACTTCCTCTGTTCATTTTCCTTTTCATTTATGCTGGAAGGG AATATTTCTTTTAATTGTTATTTACAATATTAAACTGAAAACTCTTCACTGAATTTATGTTGATCTTCTGGAATATAGCA TTATGTATATCTTAAGTAATTTCTAGCTTATAAAAAATGGTGCCTCCTGCAGTGATCGGTTTTTGCCTGACAAAGCTATA GATTTGATTGATGAAGCTGGTTCCCGAGTCCGGCTTCGACATGCCCAGGTACATTGTGTGACTCCCCTCCCTGAATCAAC AGTTAATCATTTGTCTATTGTTGAACTAATTGAACCAGATTTCCATATTTACAGTTGCCTGAAGAAGCAAGAGAGCTCGA CAAGGAGGTCAGGCAGATTGTGAAGGAGAAGGATGAAGCTGTTCGCAACCAAGACTTTGAAAAGGTAACGCTTTTATCTG AGATTTAACCATTAAAGTTTTAACATCAACTAACGTTTTCAGGATATAATAATCCTTACTCCAATGAGTAATCTTGTTTG TCTTCAAAAAGAGATGTTCTACCTTTCAGTTAACATTAAAAGAATGGAGGATTATTTTCCATAAGTTCTGATGTGACTTC TAGTTCTAGTTTGTTGAGTGTAAAGTGCATTTAGTGGTTTGTTTCTTGTTCATACCAATTATGTCTCCAAATTTATTCGC TTTTTGGATTATAAGTAACGGGCTTGACGATACATGGATTTCTTTACAGGCTGGAGAGCTGCGAGACAGAGAAATGGATC TTAAGACACAGATCTCAGCTCTTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAGAGTGAGGCAGCAGATGGAGGTCCA GTTGTGACTGAAGTTGACATACAACATATTGTGGCCTCCTGGACTGGTATTCCTGTTGACAAAGTATCGACAGATGAATC TGATCGCCTCCTCAAGATGGAAGAGACATTACACAAGCGAGTTATTGGTCAGGATGAAGCAGTAAAAGCCATTAGCCGGG CAATCCGTCGAGCGCGGGTTGGACTAAAGAACCCTAACCGTCCAATTGCAAGCTTCATCTTTTCTGGGCCAACTGGTGTG GGGAAGTCTGAGTTGGCCAAAACACTGGCTTCATACTACTTTGGTTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGA ATTTATGGAAAGGCACACGGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGA CTGAAGCAGTTCGGCGCCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATG ATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGATAGTAAAGGGAGAACTGTGGACTTCAAGAACACCCTTCTTATAAT GACATCAAACGTCGGAAGTAGTGTGATTGAGAAAGGAGGCCGTAAAATAGGATTTGACCTTGATTATGATGAGAAAGACA GCAGTTATAATCGAATAAAGAGCTTGGTGACCGAGGAGCTTAAGCAGTACTTTAGGCCTGAGTTTCTGAATAGGTTGGAT GAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTGAAGGAGATAGCTGACATAATGCTTAAGGAGGTGTTTGAGAG ACTGAAAACCAAAGAAATTGATCTTTCAGTGACAGAGAGATTTAAGGAGAGAGTGGTTGACGAAGGTTATAATCCAAGTT ATGGGGCTAGGCCTCTAAGAAGAGCAATAATGCGACTCTTGGAGGACAGCATGGCAGAGAAGATGCTTGCTAGAGAGATT AAAGAGGGCGACTCTGTTATAGTTGATGCTGATTCTGATGGTAATGTGATTGTGCTCAATGGTAGCAGTGACAGTGGTGC CCCAGAATCACTGCCAGAGGTTCTTCCTGTGTAA
CDS sequence (LotjaGi1g1v0684200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAGGGTTTTGGCTCAGTCAATCAATATCCCTGGCCTAGTGGCCGGGCGAACGCACGGTCGTAATAACAGGTCCAC GAAGTCGAAAAGACCTGTCAAAATGATGTATACCACCTTGCAAGCTCCTGCACTAAGATTGTCAGGTTTCTCGGGCCTGC GTAGTTTTAATAATTTGGATACTATGTTGAGACCTGGACTAGATTTTCATTCTAAGGTGTTCGCTACTACAACTATGTCT CGTAAGGCGAGGGCTAGCAGATGCGTACCGAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATTATGCT TGCCCAGGAGGAGGCGAGACGGATGGGTCATAATTTTGTTGGGACGGAACAGGTCCTGTTGGGTCTTATTGGTGAAGGCA CTGGTATTGCTGCTAAGGTTCTCAAGGCTATGGGTATTAGCCTTAAAGATGCACGTGTGGAAGTGGAAAAGATCATTGGA AGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCTAAGCGTGTTTTGGAACTCTCGCTGGAGGAGGC TCGTCTTCTTGGTCACAACTATATTGGGTCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGGGAGGGTGTAGCAGCAC GTGTTATTCGCATGGTTGGTGAGGGTGCTGACACTATTGCTGCTACTGTTGGCCCCGGAAGTAGTAGCAATAAGATGCCA ACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTAGATCCTGTTGTGGGTAGGCAGCCACA AATTGAACGCGTCACTCAAATTTTGGGCCGTCGTACCAAAAATAATCCTTGTCTTATTGGCGAGCCTGGTGTTGGAAAGA CAGCTATTGCCGAAGGTCTTGCTCAACGGATTGCAACTGGCGATGTTCCTGAAACCCTAGAGGGAAAGAAGGTAATAACC CTTGATATGGGTCTACTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGGTTGAAGAAGCTAATGGAGGAAAT CAAACAAAGTGATGATATAATCCTTTTCATTGATGAAGTTCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTG ATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGGGAACTACAGTGTATAGGAGCCACAACACTGGATGAATACAGG AAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGGATGAAACCAT ACAAATACTGAAAGGACTTAGAGAACGCTATGAGATTCACCACAAGCTCCGCTATACAGATGATGCTCTTGTAGCTGCTG CACATCTGTCATATCAATATATCAGTGATCGGTTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGA GTCCGGCTTCGACATGCCCAGTTGCCTGAAGAAGCAAGAGAGCTCGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAGGA TGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAG CTCTTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAGAGTGAGGCAGCAGATGGAGGTCCAGTTGTGACTGAAGTTGAC ATACAACATATTGTGGCCTCCTGGACTGGTATTCCTGTTGACAAAGTATCGACAGATGAATCTGATCGCCTCCTCAAGAT GGAAGAGACATTACACAAGCGAGTTATTGGTCAGGATGAAGCAGTAAAAGCCATTAGCCGGGCAATCCGTCGAGCGCGGG TTGGACTAAAGAACCCTAACCGTCCAATTGCAAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCC AAAACACTGGCTTCATACTACTTTGGTTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACAC GGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAAGCAGTTCGGCGCC GTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAA GATGGAAGGCTAACAGATAGTAAAGGGAGAACTGTGGACTTCAAGAACACCCTTCTTATAATGACATCAAACGTCGGAAG TAGTGTGATTGAGAAAGGAGGCCGTAAAATAGGATTTGACCTTGATTATGATGAGAAAGACAGCAGTTATAATCGAATAA AGAGCTTGGTGACCGAGGAGCTTAAGCAGTACTTTAGGCCTGAGTTTCTGAATAGGTTGGATGAAATGATTGTTTTCAGG CAACTCACAAAGCTGGAGGTGAAGGAGATAGCTGACATAATGCTTAAGGAGGTGTTTGAGAGACTGAAAACCAAAGAAAT TGATCTTTCAGTGACAGAGAGATTTAAGGAGAGAGTGGTTGACGAAGGTTATAATCCAAGTTATGGGGCTAGGCCTCTAA GAAGAGCAATAATGCGACTCTTGGAGGACAGCATGGCAGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGCGACTCTGTT ATAGTTGATGCTGATTCTGATGGTAATGTGATTGTGCTCAATGGTAGCAGTGACAGTGGTGCCCCAGAATCACTGCCAGA GGTTCTTCCTGTGTAA
Protein sequence (LotjaGi1g1v0684200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRVLAQSINIPGLVAGRTHGRNNRSTKSKRPVKMMYTTLQAPALRLSGFSGLRSFNNLDTMLRPGLDFHSKVFATTTMS RKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIG RGSGFVAVEIPFTPRAKRVLELSLEEARLLGHNYIGSEHLLLGLLREGEGVAARVIRMVGEGADTIAATVGPGSSSNKMP TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETLEGKKVIT LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR KHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLSYQYISDRFLPDKAIDLIDEAGSR VRLRHAQLPEEARELDKEVRQIVKEKDEAVRNQDFEKAGELRDREMDLKTQISALIEKGKEMSKAESEAADGGPVVTEVD IQHIVASWTGIPVDKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELA KTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILE DGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFR QLTKLEVKEIADIMLKEVFERLKTKEIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSV IVDADSDGNVIVLNGSSDSGAPESLPEVLPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 910 | 845 | 0.0 | – | |
| PANTHER | 66 | 910 | 845 | 0.0 | – | |
| Gene3D | 92 | 232 | 141 | 1.5E-51 | ||
| ProSiteProfiles | 94 | 237 | 144 | 41.273 | – | |
| SUPERFAMILY | 95 | 205 | 111 | 4.45E-27 | ||
| Pfam | 108 | 160 | 53 | 4.7E-17 | ||
| Pfam | 184 | 228 | 45 | 2.9E-12 | ||
| Gene3D | 233 | 422 | 190 | 1.1E-73 | – | |
| SUPERFAMILY | 239 | 516 | 278 | 1.22E-77 | ||
| CDD | 262 | 414 | 153 | 3.21591E-21 | – | |
| SMART | 279 | 419 | 141 | 2.3E-13 | ||
| Pfam | 284 | 400 | 117 | 4.0E-14 | ||
| Coils | 333 | 353 | 21 | - | – | |
| ProSitePatterns | 374 | 386 | 13 | - | ||
| Pfam | 422 | 523 | 102 | 8.3E-35 | ||
| Gene3D | 423 | 552 | 130 | 2.9E-39 | – | |
| Coils | 492 | 512 | 21 | - | – | |
| ProSiteProfiles | 496 | 531 | 36 | 11.605 | ||
| Gene3D | 554 | 800 | 247 | 1.3E-97 | – | |
| SUPERFAMILY | 571 | 888 | 318 | 3.13E-79 | ||
| CDD | 596 | 744 | 149 | 1.96654E-17 | – | |
| Pfam | 621 | 795 | 175 | 1.9E-55 | ||
| SMART | 622 | 803 | 182 | 2.6E-9 | ||
| PRINTS | 626 | 644 | 19 | 6.1E-41 | ||
| ProSitePatterns | 656 | 674 | 19 | - | ||
| PRINTS | 671 | 689 | 19 | 6.1E-41 | ||
| PRINTS | 700 | 718 | 19 | 6.1E-41 | ||
| PRINTS | 733 | 747 | 15 | 6.1E-41 | ||
| Pfam | 802 | 882 | 81 | 2.8E-23 | ||
| SMART | 802 | 892 | 91 | 6.5E-31 | ||
| Gene3D | 802 | 902 | 101 | 1.8E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi1g1v0684200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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