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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0264100 |
| Transcript ID | LotjaGi2g1v0264100.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73346920..73353754) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAACCCCAAATGATCCGAAAGATAACAATATTCACCCTAAACTCTGTATTTATAGGCAACATGCCTCACTCACTAAC CCCCCACTAATTAATAAACTCTCACTAATTGAGCATGTCTAACAATTTTCCTCACATTTTCGCTGTATTGGTCTTTATTA TACCCTCTACAACTCCTGCTCTTATATCCTTTAATGTGTTCTATAAGAATGTAATATTTATCTTGTTTTATTCTCCTTTT TGAATTGTGACTTGGCCAGGAGTTGTAAACTTGATCTGATTATTCTTGTCATTTTTTCAGCTTATATCACTTGATATGGG AGCACTTATTGCTGGAGCAAAATATCGGGGAGAATTTGAGGATAGGCTGAAAGCTGTTCTCAAAGAAGTAACAGAATCTG ATGGTCAGACTGTTCTTTTCATCGATGAGATTCATACGGTTGTTGGGGCAGGTAATGGGATTTAAAGTTTTCCATTTAAA GGCAGCTGATGTTTTTGGTATTTAAAATCTGTTTGAAGGGTCTAGACAATTGTTCTCTATTTCTTTTGACTTCTGTTTTT GTAACGCCCCGATTTCTCGAGTGTTACACAGTAACTAATTAACCAATTTTCGTAAAGAGTTTTCGTCGATTCACTTATTA ATCTTGAATTAATGATAAAAGTTCAATTTTACAAAATTCTCGAAACTTAACCATTTCAAACTTGCGGAAATAAACATCAA CCTAAACCTCAAACTTTATTAATCATTGAAAAGAGTATGAAATAAATATCCGGAAGAAAACTTCAAAGTAAATTACATCA AGTTAAACTATCTCAACTAAAATAAAGTAATGGTTCAATACTTCCAAAACTCGGTACTCTCAACCCAAAAGAAAAATGGA TGTCTCACAACCCAACCATATCCTTGGCCCCTTCCTCTTTATCTTCTTCCTCTTCATCAGAAGTGTAGTCGTCCTCCGGT ATTGGCACGTCACATAGCATCAACTCCCAAGAATGAGTCATCGCCATTATCTTCACGACCATCTACCCCCCCAAATAAAC ACATAGCAAACAAGCAGGGTCAGGTCCAACAAAAAGAATGATAATGACAAAATCAACAACAACATATATAATATAAGTAC ATTATATGTCTTTTATGGGAAAGAGTCAGTTACTAACGGAATCTCACTTCACACAACCCACCAAAACTTCCATGGCCATC TTCGTGCTTCCGCAGAGGCACGGTTATCACGGTGACCGCAGTCAACCAAATCACGTGGAGCCGCAATGATCCACAAAAGT TCACGGTGACCGCAGTCAACCAAATCACGTGAAGCCACACCGGCCCACAAGGTTCACGGGAGACCGCAGTCAACCCAAAT AACTCCCTCGCGTGCAAGGTACCATCGTTCTCATGGACCATAGTCTACCTGACCTATGTCCAAATTATTCACATTTACTT GCAAGCGAGTTTATTACACTTTTCTCTTTGTTAAGTCTCTAAAGTCAATCCTAGAGTCTTATCATACTCTTTATACAACA ACCTTCACAACACAACATTCACGGGTTACAAGGGAATTACGGCTAGGTGAGCGACCCTTGAACCATTAACTGAGAAAATA AATATAATCCACGTAAAGGAACGCAAGAACATTCACTCATGCATAATATATCATCGCAACTTCAACATATTGACAGCAGA AACAACTTTCACAAAAATAGAGCCACAGAATGCATCTTTCAACCAAAAATCACGTATGATACCTTTCTAGAAAGCTATTT TAAATATCTACAACTCTCTAGTTACACACTTGTTCATTTGAGTCCTATAATTAGGTGATATTAGGCCTTAAAGCTAACTG TCCGGAACAGGAAAAACAGCAGGTGTGACAGTTACTAAACACGACCCCCAGATCACATTACTAAACCAAAAATTATGTTC TTTATATGCATAGAAAGCCAATTCGAAAATCTACAATTTTCCAGTTTATCCCTTTTTCATTTGAGACCCCGAATTAGGTG TAATTAAGCTCCAAAACTCGCTGTCCAGTACAGGAAACTGGCAGAGATACTTTTGCCTTCAAATTAATTTTTCAACCATT CAAGTCCCAAAGTTTTAAACCATATTCCAGCAGCAAGAACCACATATCATATATCATATATCATGCTTAAATTTCCAGAA CCAAGATAACCATCAATTCTAGCACAAAAGGCAGATCTAAGCATATAAATCTTCAATCATTTTAATCAAGCAAAGTCATA GAAGAAACGGTAGTTGTAGTGATGATTAATGGAGAATCATGGCATCAACATTTCATCTCAAATCAGAAGCAAAACATCAA GATCTCAAGGCAGAAAAAAAACAGCAAGCATCATGAACATAAAACTCTTGCAAAAGCAATCATGTTCATGGCTTTTCTCA TAGTAAAACATGGCAAATACCCTAGGCAATCTACCCAATCCTAGGACCAGCCCTTACCTTTGTCCTTAGGCTTGAAGAAA AGATGAAATTGAAGAGCAACGTTCTGGTTTCTCTCCTCTTCTCCCACGCGTGACCTTCCTCTCTCCCTCTCGCTCGCGAA CTCCTTCTCCCTCTTGTGCGAACACGTCGACGGTGGTGGGGCTTGGGACGGTGACGGCTAGGGTGCAAGGGGAAAGTTTC TCTCACTCTTTCTCCTCTGTTTTACGTGTTTCAGAAGTGCACCAGGTTTCTTTCTTCAGAATAGTGTGAAAAGAAACCCC TTTTCCCCCCAAACCCCTACATAGCCCGCGTCCCCTCTCTCCCTCTCTTGGGCTAGGGTTTGTTTTCCTTCAAGCCCGAC CCAAGTCAAAACCCTTGACCCCATCACTTAAGAACTTACTCAGGTCTGAAACTAATCAAAACCCTCAGCCCTTTTTAGTA ATATCACGATCACACTCGGAATTGAAAGGAAACAAAACAATTAAATTCGCTGGTACTGTACAGCCAGGACCATCGTCACT AAACCGATGATATCTCGAGCTACAGAGGTCGGAATGACCTGATTCCACTTCGAGAATTTTCTAGACTTAAAGGGCTACAA CTCTCATGAAGGAAGTTTTCCCAAATGAAGTCGTTAAGACCCTCTAAAAATTCACCCAAGTTGACAGTTCAAATCTGCCA GTTATCAAACATAGCCAAAAACTTCAATTTTATTCAAACTTCCATAAAATTTGTTCCAAGTTGAACTTAGGGCCTTACAG TTTTTCTCTCTCTCTAGCACATGATTGGCATATGAAAACTCTTTAGATCAATGAATGTTCACAATTCACATCATAGAATA CGATACGTTTCAATTCATTTATTTTCGTAACATGTTGCATATAGTTTTAGTTGAGGCCTGCAAATGGTGACTTGAAATTG ATGTTGAATTTTAATTTGATTGCTATTATAATCTATCATATGCTAGGTGCTACAAATGGTGCTATGGATGCTGGTAATCT CTTAAAGCCTATGCTGGGTCGTGGAGAGCTGCGATGTATTGGTGCGACAACATTAGACGAGTATCGGAAGTATATTGAGA AGGACCCAGCATTGGAGCGTCGTTTCCAGCAAGTTTTTGTTGACCAACCTTCAGTTGAAAATACCATTTCAATATTAAGA GGACTGCGGGAAAGATACGAGCTACATCATGGAGTTCGCATTTCTGATAGTGCACTTGTGGAAGCTGCAATTCTCTCAGA CCGATACATAAGTGGGAGGTTTTTGCCTGACAAAGGTAGTAACTACTAGAAACAAACTCTAGTAAATAGTTACTGTTTTA ATATCATGAAACCTTATAAGTTTTGTAAGAATGAGGTTTGGATTCTTGATTTGAACATTTTCACTTATTTAAGCGTGCAG TATGAAAATATGTGACTTCAATAGAGGGATTATGTGAAATTTACATATGTCTGTTAAAGGACAAGTCATTGCTGTTGCTC GTGAAGCTGTGGGAACACCAATGCTAAGGGAATATAATATCATCATGTTTAAAGAATAAATTTTGTCAAGTGTTAATTGA AATTGTTTTGTCAAGATCTTGAAAGCTAAATAGCACTTCCAAACTGGTGGGAATATGCACATAACATGAGTCTATATCAT TTTCAAAAGATTGCATTTGAATTATCAATATATAGCTGAGTTTGATTATTTTTTTAAATCTAACTTGTTGAAATTGTTAT TGGAAGTATATCATAATATCATTGTTGAATATTAGAATATCTGAAAGTATCTTGGATGGTCTCTTATGAGTGGTTTCCAT ATTTCATTATATCCTCATTTTATTAGGATTAGGAGTCTAGTACTGGTATAAGTAAGGGTTAATACTTAATATATTTTCTT TTGTATTATCAAATCAATATCAATTTCAGAATATTCATAAGCTTACTCTATCTTTTACTTACCCTCTATCTTAATCCTTG TAATTTTAACAATTAATGTTAAATTGTTGCATTTTCTTAGTAGACTGGCATCAATGAGCACTAATTGCTAGCTACTTCTA AATTACAGCTATTGATCTGGTTGATGAAGCAGCTGCTAAACTGAAGATGGAAATTACTTCTAAACCTACTGCACTTGATG AGATTAATCGGTCAGTCTTGAAACTAGAGATGGAGAGACTCTCTCTCATGAATGATACAGACAAGGCATCTAAAGATAGG TTAAATCGTCTTGAGACAGAACTCTCTCTCTTAAAAGAGAAACAGGATGAACTGACAGAACAGTGGGAGCATGAAAAGTC TGTGATGACTCGTCTTCAATCAATTAAAGAAGAGGTGACTTTTATAAATGTTGCTACAGGCGGTCTTCCCTCTTTATTAA TATAAGTGCACTTTTAAAGGATTAGCAGTGTGAATGTAGCTTTTTGCTTGGTTTCCTTACATTGAACAATTAGTGCAGGT GTACATGTTTATTTAGTAATTATGCATAGCAGCATAGGGATGAATAATTTGTATAAAATATGATTTTTATGAATTGGAAG ATGAAAACCTGATTCTGATAATTTCCATATTTGCTAATGCAGATAGATAGAGTAAATCTTGAGGTTCAACAGGCTGAACG GGAGTATGATCTTAATCGTGCTGCTGAATTGAAGTATGGCAGTATAAACTCCTTGCAACGACAACTGGAAAGTGCAGAGA AGGAGTTACATGAATATATGAACTCTGGCAAGTCTATGTTGAGAGAGGAAGTTACAGGCAGTGATATTGCTGAAATTGTA AGCAAGTGGACTGGTATCCCCATTTCAAAACTTCAACAATCAGAGAGAGAGAAGCTGTTGTTTTTAGAGGATGAGCTCCA TAAACGTGTTGTAGGTCAAGATCCTGCTGTCAAGGCTATAGCTGAGGCAATTCAACGGTCAAGAGCAGGTCTTTCAGATC CCCATCGCCCAATCGCCAGTTTCATGTTCATGGGACCCACGGGTGTAGGAAAGACAGAGCTAGCCAAGACCCTTGCTTCC TTCATGTTCAATACAGAAGAAGCACTTGTACGAATTGATATGAGTGAGTACATGGAAAAACATACAGTTTCGAGATTGAT TGGGGCTCCACCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTAACAGAGACAGTTCGCCGCAGACCATATGCGGTAA TTTTGTTTGATGAGATTGAGAAGGCACACTCAGATGTTTTCAATGTATTCCTTCAAATTTTGGATGATGGAAGAGTAACC GATTCACAGGGTCGCACCATAAGTTTTACCAACACTGTTATCATCATGACCTCAAATGTTGGATCTCAGTACATTCTCAA CACAGATGATGACACTGTGCCCAGTGAGTCCAAATATGAAACCATGAAGCTGCGGGTAATGGATGCTGCAAGATCTATCT TTCGCCCTGAGTTCATGAACAGAATTGATGAGTATATTGTCTTCCGGCCTCTAGACCGTGACCAAATAAGTAGCATTGTC AGGTTACAGGTAATTCCACCCCCACTGATCCATTCATGATCAGACTCCCCCCCTTATATCCTGTGAAATGACTTAAGTCT ATGTTGATAATGAAAGCCACATAAAATGCTGGTTAGAATTATTTTTATAAATTTAGGATGCATGGGTCAACTTGCATTTT CTTTAAACTAGTCTGAGATTAAGTTGATGCACTGCCAAACTTTGTGAAGCTTGATCTTAAAATATTAACACCCAAGTTCC TACTGAAATAAGATGCATTGTTTGCACTTTTTTTGTACGATTTCTACCGTATATTGGGCTGTTATAACTTTTTTTGTACA TTCTATATAGAACGCTAAAAGCTTTTAAGCACACATTCTTTCATTGCTAAGTTTCCCTAGATCTTATTTCTCATATATTG GGCTGTTAGAGAGTAGTGTTCATGTTAACTGTCACGTGTCTGGTGTCTTTGTTGTACTGATGTATTAAGTTACTAGGTGA AGAAATAGGAAATCTGTCAACTTCATTAACTCTTCTTCATTCGAATGTTTACTAGTAACTGTGTTGCATGGTATTTTGCA TCCCAAAACTCACTTTTAAAGTACATTACAGTTGGAGCGCGTGCAGAAGAGAATCGCAGATCGCAAGATGAAAATCCAAG TAACAGAAGCTGCTATCAAACTTCTTGGAAATTTGGGGTATGATCCAAATTATGGTGCCAGGCCAGTGAAACGAGTGATT CAGCAAAATGTGGAGAATGAACTTGCCAAGGGTATTCTTAGAGGAGAGTTTAAGGATGAGGACACAATTTTGGTAGACAC AGAAGTTACAGCATTTGCCAATGGTCAACTTCCCCAGCAAAAGCTAGTGTTTAGGAGGGTTGAGACCGACTCTAAATCCA CTGCTAAATACAGCCAGGAACCACAAATTCTGTGA
CDS sequence (LotjaGi2g1v0264100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAACAATTTTCCTCACATTTTCGCTGTATTGGTCTTTATTATACCCTCTACAACTCCTGCTCTTCTTATATCACT TGATATGGGAGCACTTATTGCTGGAGCAAAATATCGGGGAGAATTTGAGGATAGGCTGAAAGCTGTTCTCAAAGAAGTAA CAGAATCTGATGGTCAGACTGTTCTTTTCATCGATGAGATTCATACGGTTGTTGGGGCAGGTGCTACAAATGGTGCTATG GATGCTGGTAATCTCTTAAAGCCTATGCTGGGTCGTGGAGAGCTGCGATGTATTGGTGCGACAACATTAGACGAGTATCG GAAGTATATTGAGAAGGACCCAGCATTGGAGCGTCGTTTCCAGCAAGTTTTTGTTGACCAACCTTCAGTTGAAAATACCA TTTCAATATTAAGAGGACTGCGGGAAAGATACGAGCTACATCATGGAGTTCGCATTTCTGATAGTGCACTTGTGGAAGCT GCAATTCTCTCAGACCGATACATAAGTGGGAGGTTTTTGCCTGACAAAGCTATTGATCTGGTTGATGAAGCAGCTGCTAA ACTGAAGATGGAAATTACTTCTAAACCTACTGCACTTGATGAGATTAATCGGTCAGTCTTGAAACTAGAGATGGAGAGAC TCTCTCTCATGAATGATACAGACAAGGCATCTAAAGATAGGTTAAATCGTCTTGAGACAGAACTCTCTCTCTTAAAAGAG AAACAGGATGAACTGACAGAACAGTGGGAGCATGAAAAGTCTGTGATGACTCGTCTTCAATCAATTAAAGAAGAGATAGA TAGAGTAAATCTTGAGGTTCAACAGGCTGAACGGGAGTATGATCTTAATCGTGCTGCTGAATTGAAGTATGGCAGTATAA ACTCCTTGCAACGACAACTGGAAAGTGCAGAGAAGGAGTTACATGAATATATGAACTCTGGCAAGTCTATGTTGAGAGAG GAAGTTACAGGCAGTGATATTGCTGAAATTGTAAGCAAGTGGACTGGTATCCCCATTTCAAAACTTCAACAATCAGAGAG AGAGAAGCTGTTGTTTTTAGAGGATGAGCTCCATAAACGTGTTGTAGGTCAAGATCCTGCTGTCAAGGCTATAGCTGAGG CAATTCAACGGTCAAGAGCAGGTCTTTCAGATCCCCATCGCCCAATCGCCAGTTTCATGTTCATGGGACCCACGGGTGTA GGAAAGACAGAGCTAGCCAAGACCCTTGCTTCCTTCATGTTCAATACAGAAGAAGCACTTGTACGAATTGATATGAGTGA GTACATGGAAAAACATACAGTTTCGAGATTGATTGGGGCTCCACCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTAA CAGAGACAGTTCGCCGCAGACCATATGCGGTAATTTTGTTTGATGAGATTGAGAAGGCACACTCAGATGTTTTCAATGTA TTCCTTCAAATTTTGGATGATGGAAGAGTAACCGATTCACAGGGTCGCACCATAAGTTTTACCAACACTGTTATCATCAT GACCTCAAATGTTGGATCTCAGTACATTCTCAACACAGATGATGACACTGTGCCCAGTGAGTCCAAATATGAAACCATGA AGCTGCGGGTAATGGATGCTGCAAGATCTATCTTTCGCCCTGAGTTCATGAACAGAATTGATGAGTATATTGTCTTCCGG CCTCTAGACCGTGACCAAATAAGTAGCATTGTCAGGTTACAGTTGGAGCGCGTGCAGAAGAGAATCGCAGATCGCAAGAT GAAAATCCAAGTAACAGAAGCTGCTATCAAACTTCTTGGAAATTTGGGGTATGATCCAAATTATGGTGCCAGGCCAGTGA AACGAGTGATTCAGCAAAATGTGGAGAATGAACTTGCCAAGGGTATTCTTAGAGGAGAGTTTAAGGATGAGGACACAATT TTGGTAGACACAGAAGTTACAGCATTTGCCAATGGTCAACTTCCCCAGCAAAAGCTAGTGTTTAGGAGGGTTGAGACCGA CTCTAAATCCACTGCTAAATACAGCCAGGAACCACAAATTCTGTGA
Protein sequence (LotjaGi2g1v0264100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNNFPHIFAVLVFIIPSTTPALLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESDGQTVLFIDEIHTVVGAGATNGAM DAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVFVDQPSVENTISILRGLRERYELHHGVRISDSALVEA AILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLMNDTDKASKDRLNRLETELSLLKE KQDELTEQWEHEKSVMTRLQSIKEEIDRVNLEVQQAEREYDLNRAAELKYGSINSLQRQLESAEKELHEYMNSGKSMLRE EVTGSDIAEIVSKWTGIPISKLQQSEREKLLFLEDELHKRVVGQDPAVKAIAEAIQRSRAGLSDPHRPIASFMFMGPTGV GKTELAKTLASFMFNTEEALVRIDMSEYMEKHTVSRLIGAPPGYVGYEEGGQLTETVRRRPYAVILFDEIEKAHSDVFNV FLQILDDGRVTDSQGRTISFTNTVIIMTSNVGSQYILNTDDDTVPSESKYETMKLRVMDAARSIFRPEFMNRIDEYIVFR PLDRDQISSIVRLQLERVQKRIADRKMKIQVTEAAIKLLGNLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTI LVDTEVTAFANGQLPQQKLVFRRVETDSKSTAKYSQEPQIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 8 | 16 | 9 | - | – | |
| Gene3D | 15 | 134 | 120 | 1.3E-40 | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| SUPERFAMILY | 24 | 336 | 313 | 1.82E-72 | ||
| PANTHER | 24 | 671 | 648 | 0.0 | – | |
| PANTHER | 24 | 671 | 648 | 0.0 | – | |
| CDD | 24 | 128 | 105 | 9.2494E-10 | – | |
| Pfam | 25 | 123 | 99 | 7.1E-6 | ||
| Phobius | 25 | 681 | 657 | - | – | |
| ProSitePatterns | 81 | 93 | 13 | - | ||
| Pfam | 129 | 231 | 103 | 8.8E-34 | ||
| Gene3D | 135 | 335 | 201 | 2.0E-71 | – | |
| Coils | 221 | 248 | 28 | - | – | |
| Coils | 259 | 320 | 62 | - | – | |
| SUPERFAMILY | 337 | 643 | 307 | 1.16E-81 | ||
| Gene3D | 340 | 560 | 221 | 4.7E-87 | – | |
| CDD | 362 | 561 | 200 | 9.21932E-17 | – | |
| Pfam | 387 | 555 | 169 | 6.5E-57 | ||
| SMART | 388 | 563 | 176 | 1.6E-8 | ||
| PRINTS | 392 | 410 | 19 | 9.0E-41 | ||
| ProSitePatterns | 422 | 440 | 19 | - | ||
| PRINTS | 437 | 455 | 19 | 9.0E-41 | ||
| PRINTS | 466 | 484 | 19 | 9.0E-41 | ||
| PRINTS | 499 | 513 | 15 | 9.0E-41 | ||
| Pfam | 562 | 641 | 80 | 1.5E-25 | ||
| Gene3D | 562 | 659 | 98 | 5.5E-28 | – | |
| SMART | 562 | 656 | 95 | 6.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0264100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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