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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0684200 |
| Transcript ID | LotjaGi1g1v0684200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125108118..125113398) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTAGGGTTTTGGCTCAGTCAATCAATATCCCTGGCCTAGTGGCCGGGCGAACGCACGGTCGTAATAACAGGTCCAC GAAGTCGAAAAGACCTGTCAAAATGATGTATACCACCTTGCAAGCTCCTGCACTAAGATTGTCAGGTTTCTCGGGCCTGC GTAGTTTTAATAATTTGGATACTATGTTGAGACCTGGACTAGATTTTCATTCTAAGGTGTTCGCTACTACAACTATGTCT CGTAAGGCGAGGGCTAGCAGATGCGTACCGAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATTATGCT TGCCCAGGAGGAGGCGAGACGGATGGGTCATAATTTTGTTGGGACGGAACAGGTCCTGTTGGGTCTTATTGGTGAAGGCA CTGGTATTGCTGCTAAGGTTCTCAAGGCTATGGGTATTAGCCTTAAAGATGCACGTGTGGAAGTGGAAAAGATCATTGGA AGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCTAAGCGTGTTTTGGAACTCTCGCTGGAGGAGGC TCGTCTTCTTGGTAAATGCTGTCTTTCCTTTATCCATGAAGTGTTTTTATTGATGAAAATTTTCTTCCTTGTAATCAACC TTACCAATTTGCCTCTTTTTTTTTTTCTTTGTTGTTTGAAAGAAGGTGGAAGTGATTTGGTTATATTATATTTGTTCTGG TGCATTTATCTATTTTACTTGGAGAGTAACCTAGGTTTTGATGATTTATGGGAAAATGAGGGAAAAAGTAAAAAGATGAG AATTTTCTTTTTTTGTAATCAACTGTCCATTTCTGATCAGCTTTCCATGGTTTTCTCTTTGGCTTTTGTCGTTTGGAAGA ATGTAGAAGTGATTTGATTACATTTGGACATTTGGTTCTGTGCATTTATCTATTTTACTTGAAGAGTCACATAGGTTTTG ATGATTTTATAGAAAAAAAAAGAGGAAGATAGTAACAGAGGATCGGTAAACTAGTAAACTACCCCACCGTATAATGAGTT ACAGAGAGAAGAGAAGGATCATGCACTGGATTCTCATTCCAAAGGCTCTAAAACCTTTCATTCCTAGTGAGCCATTGCTA GATGATGCTATCTAGCCTTTTTTTTTTCAAAATGATTCATCTAAATGGGCTATCATGATGTCAAATATTACTTGGAGTTG GCAAATGTTTCTCAGTGCCCTCTCTGGCAGTCAATATTACTACGTGTTATTGGCATGATAATAGTGTTGAAGAAAGTTAT TAAAGGTATAAACATTCCAAGGATGACTTAATTTATTGCTGCCTTGATTGATCTGATTGTTGACTAATTTGCTTTAAATG TGTTCAAAGTGAGTTGGAGTTTATCTATGAATTTGTTTATTTATTTATTCATTCATTTTTTGGCTGGTCTTTCTGTTCTT TCTTCTATTATTTTATTTTGGGATGGGTCTATGCAATATTCCGTTATCACTCAATGAAACGTTTAGGCTTACTCCTTGAA ATTTTCAGGTCACAACTATATTGGGTCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGGGAGGGTGTAGCAGCACGTG TTCTTGAAAACCTGGGTGCTGATCCTTCTAATATTCGCTCTCAGGTTTCTATTGTATCCTCATTTATTCATTTTCCCGCA CACTATATGGACATATCTTTTATCCTTTTTTTTAATCTTGTACTCCATTGAGTGAGAACAGGTTATTCGCATGGTTGGTG AGGGTGCTGACACTATTGCTGCTACTGTTGGCCCCGGAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACC AATTTGACCAAGCTAGCAGAGGAGGTAATTACCAGTTCCTAGTTTTCTTCACGACATATGGTATAGTTTTTTTGTGTGTT TAAAAGCATACTTATTTTCTTCCGAAATCAAAATCTCAGGGAAAATTAGATCCTGTTGTGGGTAGGCAGCCACAAATTGA ACGCGTCACTCAAATTTTGGGCCGTCGTACCAAAAATAATCCTTGTCTTATTGGCGAGCCTGGTGTTGGAAAGACAGCTA TTGCCGAAGGTCTTGCTCAACGGATTGCAACTGGCGATGTTCCTGAAACCCTAGAGGGAAAGAAGGTTAGTATGAATTAT TTTACATTGGTTTCATTAAGGGAATTTTCTATTCCATTTTCAGCTTTATCATCAACTTGCTTGGAGCACCCTGCCTTATT TTCAGTCATTTCATTTGTGAGATTAATTTTGCATTTGTATTTGATAAGTATTGAATCTATTGATTAAATTCTTGGATTTG GTATTTTATCACACTTTTGGGGATCCTGAATAATGTTAGTTTTGTCTATGATTTAGGTAATAACCCTTGATATGGGTCTA CTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGGTTGAAGAAGCTAATGGAGGAAATCAAACAAAGTGATGA TATAATCCTTTTCATTGATGAAGTTCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTGATGCTGCAAACATAT TAAAACCAGCTCTTGCCAGAGGGGAACTACAGGTCATATTTCCCTTGACGGCTTGACGTGTTCAAAATATATTTCCTTTT GATTCTGACCTCAAATTCATTTTTTTTGTTGTTGTTGGGCTAGGGGTTTCATTTTATATACCCTATCCTTGTCATCAATC ATATCTATCAATTATCTTGTTCCTTCATGGCCAATGCTCGCCTGCATTGGTTGACGGTGAATAAGTTACTAAATCAAGTT TCTTCTCTTGCGTTGTGCTTGTGCACAAATCCCCATTTTTTCCAATATGCTTTGTTAGTTTTGACTTTTGACAACAATGT ATATTTTAGTTTTTTTTACTATGAAGGTGTTTTGCTAGCTTGTCTAATATATTTTAGTTTTTAAATCTTGTACCTTGTAC CCGTACCTGGTACCGGTACCGTAGCTGTATCATTGCAACTTAGATGATCATGGCAGACTTATGGTGAAATGTGAAGACAT ATGGTTATATGATAATATCTATGCTAAACTTGTCACTATTGCTCATTTGGAACTGTTCTAAAAAAATGACTGCGTATTAT GCAGTGTATAGGAGCCACAACACTGGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCGATTCCAGC CAGTTAAAGTGCCAGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGATTCACCAC AAGCTCCGCTATACAGATGATGCTCTTGTAGCTGCTGCACATCTGTCATATCAATATATCAGGTTTATCATAATTTATAC TTCTGCACTTCCTCTGTTCATTTTCCTTTTCATTTATGCTGGAAGGGAATATTTCTTTTAATTGTTATTTACAATATTAA ACTGAAAACTCTTCACTGAATTTATGTTGATCTTCTGGAATATAGCATTATGTATATCTTAAGTAATTTCTAGCTTATAA AAAATGGTGCCTCCTGCAGTGATCGGTTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGG CTTCGACATGCCCAGGTACATTGTGTGACTCCCCTCCCTGAATCAACAGTTAATCATTTGTCTATTGTTGAACTAATTGA ACCAGATTTCCATATTTACAGTTGCCTGAAGAAGCAAGAGAGCTCGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAGGA TGAAGCTGTTCGCAACCAAGACTTTGAAAAGGTAACGCTTTTATCTGAGATTTAACCATTAAAGTTTTAACATCAACTAA CGTTTTCAGGATATAATAATCCTTACTCCAATGAGTAATCTTGTTTGTCTTCAAAAAGAGATGTTCTACCTTTCAGTTAA CATTAAAAGAATGGAGGATTATTTTCCATAAGTTCTGATGTGACTTCTAGTTCTAGTTTGTTGAGTGTAAAGTGCATTTA GTGGTTTGTTTCTTGTTCATACCAATTATGTCTCCAAATTTATTCGCTTTTTGGATTATAAGTAACGGGCTTGACGATAC ATGGATTTCTTTACAGGCTGGAGAGCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAGCTCTTATAGAAAAAG GCAAGGAGATGAGTAAGGCAGAGAGTGAGGCAGCAGATGGAGGTCCAGTTGTGACTGAAGTTGACATACAACATATTGTG GCCTCCTGGACTGGTATTCCTGTTGACAAAGTATCGACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACATTACA CAAGCGAGTTATTGGTCAGGATGAAGCAGTAAAAGCCATTAGCCGGGCAATCCGTCGAGCGCGGGTTGGACTAAAGAACC CTAACCGTCCAATTGCAAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACACTGGCTTCA TACTACTTTGGTTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACGGTCTCCAAACTCAT TGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAAGCAGTTCGGCGCCGTCCCTACACTGTTG TACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACA GATAGTAAAGGGAGAACTGTGGACTTCAAGAACACCCTTCTTATAATGACATCAAACGTCGGAAGTAGTGTGATTGAGAA AGGAGGCCGTAAAATAGGATTTGACCTTGATTATGATGAGAAAGACAGCAGTTATAATCGAATAAAGAGCTTGGTGACCG AGGAGCTTAAGCAGTACTTTAGGCCTGAGTTTCTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAGCTG GAGGTGAAGGAGATAGCTGACATAATGCTTAAGGAGGTGTTTGAGAGACTGAAAACCAAAGAAATTGATCTTTCAGTGAC AGAGAGATTTAAGGAGAGAGTGGTTGACGAAGGTTATAATCCAAGTTATGGGGCTAGGCCTCTAAGAAGAGCAATAATGC GACTCTTGGAGGACAGCATGGCAGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGCGACTCTGTTATAGTTGATGCTGAT TCTGATGGTAATGTGATTGTGCTCAATGGTAGCAGTGACAGTGGTGCCCCAGAATCACTGCCAGAGGTTCTTCCTGTGTA A
CDS sequence (LotjaGi1g1v0684200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAGGGTTTTGGCTCAGTCAATCAATATCCCTGGCCTAGTGGCCGGGCGAACGCACGGTCGTAATAACAGGTCCAC GAAGTCGAAAAGACCTGTCAAAATGATGTATACCACCTTGCAAGCTCCTGCACTAAGATTGTCAGGTTTCTCGGGCCTGC GTAGTTTTAATAATTTGGATACTATGTTGAGACCTGGACTAGATTTTCATTCTAAGGTGTTCGCTACTACAACTATGTCT CGTAAGGCGAGGGCTAGCAGATGCGTACCGAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTGATTATGCT TGCCCAGGAGGAGGCGAGACGGATGGGTCATAATTTTGTTGGGACGGAACAGGTCCTGTTGGGTCTTATTGGTGAAGGCA CTGGTATTGCTGCTAAGGTTCTCAAGGCTATGGGTATTAGCCTTAAAGATGCACGTGTGGAAGTGGAAAAGATCATTGGA AGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCTAAGCGTGTTTTGGAACTCTCGCTGGAGGAGGC TCGTCTTCTTGGTCACAACTATATTGGGTCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGGGAGGGTGTAGCAGCAC GTGTTCTTGAAAACCTGGGTGCTGATCCTTCTAATATTCGCTCTCAGGTTATTCGCATGGTTGGTGAGGGTGCTGACACT ATTGCTGCTACTGTTGGCCCCGGAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCT AGCAGAGGAGGGAAAATTAGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGCGTCACTCAAATTTTGGGCCGTCGTA CCAAAAATAATCCTTGTCTTATTGGCGAGCCTGGTGTTGGAAAGACAGCTATTGCCGAAGGTCTTGCTCAACGGATTGCA ACTGGCGATGTTCCTGAAACCCTAGAGGGAAAGAAGGTAATAACCCTTGATATGGGTCTACTTGTTGCTGGAACTAAATA TCGTGGAGAATTTGAGGAGAGGTTGAAGAAGCTAATGGAGGAAATCAAACAAAGTGATGATATAATCCTTTTCATTGATG AAGTTCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGA GGGGAACTACAGTGTATAGGAGCCACAACACTGGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCG ATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGA TTCACCACAAGCTCCGCTATACAGATGATGCTCTTGTAGCTGCTGCACATCTGTCATATCAATATATCAGTGATCGGTTT TTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGGCTTCGACATGCCCAGTTGCCTGAAGAAGC AAGAGAGCTCGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAGGATGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTG GAGAGCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAGCTCTTATAGAAAAAGGCAAGGAGATGAGTAAGGCA GAGAGTGAGGCAGCAGATGGAGGTCCAGTTGTGACTGAAGTTGACATACAACATATTGTGGCCTCCTGGACTGGTATTCC TGTTGACAAAGTATCGACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACATTACACAAGCGAGTTATTGGTCAGG ATGAAGCAGTAAAAGCCATTAGCCGGGCAATCCGTCGAGCGCGGGTTGGACTAAAGAACCCTAACCGTCCAATTGCAAGC TTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACACTGGCTTCATACTACTTTGGTTCTGAAGA GGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACGGTCTCCAAACTCATTGGTTCACCTCCTGGATATG TTGGTTACACTGAGGGTGGTCAACTGACTGAAGCAGTTCGGCGCCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAG AAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGATAGTAAAGGGAGAACTGT GGACTTCAAGAACACCCTTCTTATAATGACATCAAACGTCGGAAGTAGTGTGATTGAGAAAGGAGGCCGTAAAATAGGAT TTGACCTTGATTATGATGAGAAAGACAGCAGTTATAATCGAATAAAGAGCTTGGTGACCGAGGAGCTTAAGCAGTACTTT AGGCCTGAGTTTCTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTGAAGGAGATAGCTGA CATAATGCTTAAGGAGGTGTTTGAGAGACTGAAAACCAAAGAAATTGATCTTTCAGTGACAGAGAGATTTAAGGAGAGAG TGGTTGACGAAGGTTATAATCCAAGTTATGGGGCTAGGCCTCTAAGAAGAGCAATAATGCGACTCTTGGAGGACAGCATG GCAGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGCGACTCTGTTATAGTTGATGCTGATTCTGATGGTAATGTGATTGT GCTCAATGGTAGCAGTGACAGTGGTGCCCCAGAATCACTGCCAGAGGTTCTTCCTGTGTAA
Protein sequence (LotjaGi1g1v0684200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRVLAQSINIPGLVAGRTHGRNNRSTKSKRPVKMMYTTLQAPALRLSGFSGLRSFNNLDTMLRPGLDFHSKVFATTTMS RKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIG RGSGFVAVEIPFTPRAKRVLELSLEEARLLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRSQVIRMVGEGADT IAATVGPGSSSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA TGDVPETLEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPALAR GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLSYQYISDRF LPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVRQIVKEKDEAVRNQDFEKAGELRDREMDLKTQISALIEKGKEMSKA ESEAADGGPVVTEVDIQHIVASWTGIPVDKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIAS FIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE KAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYF RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIDLSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSM AEKMLAREIKEGDSVIVDADSDGNVIVLNGSSDSGAPESLPEVLPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 925 | 860 | 0.0 | – | |
| PANTHER | 66 | 925 | 860 | 0.0 | – | |
| Gene3D | 92 | 241 | 150 | 6.4E-58 | ||
| ProSiteProfiles | 94 | 236 | 143 | 48.699 | – | |
| SUPERFAMILY | 95 | 235 | 141 | 4.32E-30 | ||
| Pfam | 108 | 160 | 53 | 4.8E-17 | ||
| Pfam | 184 | 235 | 52 | 2.3E-17 | ||
| Gene3D | 246 | 437 | 192 | 1.1E-73 | – | |
| SUPERFAMILY | 254 | 531 | 278 | 1.24E-77 | ||
| CDD | 277 | 429 | 153 | 3.15044E-21 | – | |
| SMART | 294 | 434 | 141 | 2.3E-13 | ||
| Pfam | 299 | 415 | 117 | 4.1E-14 | ||
| Coils | 348 | 368 | 21 | - | – | |
| ProSitePatterns | 389 | 401 | 13 | - | ||
| Pfam | 437 | 538 | 102 | 8.5E-35 | ||
| Gene3D | 438 | 567 | 130 | 3.0E-39 | – | |
| Coils | 507 | 527 | 21 | - | – | |
| ProSiteProfiles | 511 | 546 | 36 | 11.605 | ||
| Gene3D | 569 | 815 | 247 | 1.3E-97 | – | |
| SUPERFAMILY | 586 | 903 | 318 | 3.22E-79 | ||
| CDD | 611 | 759 | 149 | 2.00248E-17 | – | |
| Pfam | 636 | 810 | 175 | 2.0E-55 | ||
| SMART | 637 | 818 | 182 | 2.6E-9 | ||
| PRINTS | 641 | 659 | 19 | 6.4E-41 | ||
| ProSitePatterns | 671 | 689 | 19 | - | ||
| PRINTS | 686 | 704 | 19 | 6.4E-41 | ||
| PRINTS | 715 | 733 | 19 | 6.4E-41 | ||
| PRINTS | 748 | 762 | 15 | 6.4E-41 | ||
| SMART | 817 | 907 | 91 | 6.5E-31 | ||
| Gene3D | 817 | 917 | 101 | 1.8E-26 | – | |
| Pfam | 817 | 897 | 81 | 2.9E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi1g1v0684200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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