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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0509100 |
| Transcript ID | LotjaGi1g1v0509100.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone clpb, putative; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A1J7HJB5|A0A1J7HJB5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0509100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102813964..102819645) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTGGCAGGCGATAGTTTCATCGCCGGAGGTAGCAAAAGAAAACAAGCATCAGATTGTGGAGACAGAGCACTTGAT GAAGGCCTTGTTGGAGCAGAAGAATGGACTTGCTCGCAGGATCTTTTCCAAGGTTGGGGTGGATAACACTCGGCTACTAG AAGCTACTGATAAGTACATTCAGCGGCAACCAAAGGTGATTATTTTGAATTGAAATTTGAGTACTTGCAGTTTATTTGCT GGTTGAGTTTAACCTTAACTACTAACTGCTACTTATAAGTGGATGAGACATTTGTTATGTGGTTCTTTATTCTGTATTGC AATAACCCAGTTGTATAACTCTTGTTCAATTGTTTAGGTTCTAGGAGAATCAGGTGGCTCAATGTTGGGGCGTGATTTGG AGGCATTGATTCAGAGAGCCAGGGACTACAGGAAAGAGTATGAGGATTCATTTGTGTCAGTTGAGCACTTGGTTCTCGGT TTTTCCCAAGATCAACGACTTGGGAAACAGTTATTTAGAGAATTTCAAGTATCTCAGCAGGCTCTAAAATCTGCAATAGA GTCCATTAGGGGACGCCAGTCGGTTATTGACCAAGGTAGTGGCAATTTCCATGTGTATTCTCTTCTTTTTAAATGTTTTA ATATAATGATATAGCTGTGTATTGTGTTCTTTTTATCTTACCTCTTGTTTTAATATAATTTCCATTGAAGTCTCAAGTGT CTTTCAGGAACGCTGCAAATTTTCTATCTTTATATTGCTTTTGACTGCCAACATCTTGTATTGATCATCTGGAATTTTTT TTATAGATCCTGAAGGGAAGTATGAAGCTTTGGAAAAATATGGAAAGGATTTGACGGCAATGGCTAAAGCAGGAAAACTT GATCCAGTCATAGGAAGAGATGATGAAATACGCAGGTGCATCCAAATTCTTTCCAGGAGAACAAAGAACAATCCTGTGCT AATTGGTGAGCCTGGTGTTGGGAAGACTGCAATTTCTGAAGGGTATGTGCTCATGTCTTCCTCCTAGTTGTTGCCTATGA TTGGATTACATTACTTTTTGTTGAGTACTTTCGCTGTTAAAAATCTTTTTGAAATAAATGTAACAAGTTTCTACCAGGAG TAGCGGGTCTTAACTAACCTGCTTCACAAATACTAGTAACGGCACATGCGGCATGGGTTAGAAAATTGAAACAAAAAAAG AAAAATAAAGGAAAATTTATTTAAAAATATAAAATGCATAGTTATATTTAGTTTGCAAAGGTAATTTCTGGAAAATATGA AGTGAGATTAAGATTTAAGAGTTTGGCATGAGTGATTAATCTAAAATGGTAACTATGTCACTTTCTTTATTATGTTGAGA GGCTTGTTTCTCTCTTTTCAAATTCTAGGCAAAACTACGGGGTTTTAGGAAAGAAAAATTGGAATATTGGATACCTTGTA AGGTAGCATATTTTAGAATGGAATATCCAATGTTGTATGCTTAGTACTTAGTTTAAACATTAGCCTTTGAAATATGCATT TAATCAGAGGTTTGAGATTTTCTCAATTTATTGGAAACCAAGCAAGTTCAGTATTTTTGTTCTTCTCTGCAATATAATTT GGATGTGTTTGTTTGCACTACTCTACATATTGACCTAATTATTCCATTAAAACAGACTTGCTCAGAGGATTGTGCAAGGA GATGTTCCTCAAGCTTTGATGAACCGTAGGGTATGTGCTTTATTTGAATGCTTGGGCTATTCTTGATAGAACTGAGAATG GATGGCGAAGGGGGGAGAAGTGGGCATGGAATGGAAATTATTGGTTTAAGTTTCTATCCCAATTTTCAATTTCACTACAA TGATATCTATTATGCCTGCCTGGTTTTAATTGTATTTTTAAAAGAAAAATGTAATATTTTCTTATTTCATCCTCCACTGG AAGTTTATATATTGGGTTAGAGTTGTATATTGACCTTATGCACTGGTCTCTTTTCAGCTTATATCCCTTGATATGGGTGC ACTTATTGCTGGAGCAAAGTACCGTGGTGAATTCGAGGATAGGCTGAAAGCTGTTCTTAAAGAAGTAACAGAATCTGATG GCCAGACTATCCTTTTCATTGATGAGATTCATACAGTTGTTGGGGCAGGTAATAACTAATAAGCTTCAAAGATATTTCCA TTTTCAGATAATTGACTTTTGGGTATTCTAAAATCAAACTATTACTTGATGCAAATTGGTTTAAATACCGATAGATCAAC ATGGATTCTGATCATAGATGATAAATTTTAATTGTCATTCTCTTAAAATTTGACTTCTGTATGTAGCTGATTCCACAGAA ATTGAAAATTAATATGCTGATTAAGGATTTAATAACAATTATAATCTGTCACACGCTAGGTGCCACAAATGGTGCTATGG ATGCTGGAAATCTCTTAAAGCCCATGCTTGGTCGGGGGGAGCTGCGCTGTATTGGAGCAACAACACTGGATGAGTATAGG AAGTATATTGAGAAGGACCCTGCGCTAGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAACCTACCGTCGAAGATACCAT TTCAATACTAAGGGGACTGCGGGAAAGGTATGAGCTACATCATGGAGTCCGAATTTCTGACAGTGCACTTGTTGAAGCTG CAATTCTCTCCGATCGATATATCAGCGGGAGATTTTTGCCTGACAAAGGTAATAATTACTTATTTAAATTGCATAAGGTC TGAAGTTTCAGGAGCATTTACACTGATTCTGTTGTTAATACTTAAATTATTATTTTGACACCTTACAAATTATATATCAA TGATAATTGAATTCTGGATTAGAGCATTTTCTGACTGGTTTAAGCATGCTTTTACGAATACTGTGATTTAAGCATGCCAT TGTTCTTAAAAAGATTGAAATGTTCAGGCTTAGTTACCAATGGGATGTAGATGATATAAACCGCTATTTAATCATTATGA AAGGATCTTTAAATCAATAGAACTTGGCTACTTTTAGGAAGATACATGCTATATGACAGTTTGAAGGATTGGTTTTAAAT GATCAAATTATAGTTCTGATTATCTCTATTTATTACACTTTTATTTAGTGAAATTTCTTTTTGGACTGGTATCAACAATG ATCATAAAGTACTTATTGCTCCCCATTTCCAAATTACAGCTATTGATCTAGTTGATGAGGCAGCTGCCAAACTGAAAATG GAAATAACTTCTAAACCTACTGCACTTGATGAGATCAATCGGGCAGTCCTGAAAATGGAGATGGAGAGACTCTCTCTCAT GAATGATACCGACAAGGCTTCTAAAGATAGGCTGAGTCGTCTTGAGGCAGAGCTCTCTCTCTTGAAAGAGAAACAGGTTG AGCTGACTGAACAGTGGGAGCATGAAAAGTCTGTCATGACTCGTATCCAATCAATCAAAGAAGAGGTGTGTGTATATACA GTTTTTTCTTCTTCCTTTGGTTTAAGGTTCTCTTTTTCATTTTAAATAAGTGATTGTTTAAAAGTAGGGTAGGATGAATA GGATTCTGTAGTGTTTCCATGATGTGGAAAACTAGTGTAAGTATATGAATTAAGTTGGTAATTATAATTGAAATTAGAAA TTAAATTAATTATATTAACTTATGTTCAACAGCAGATACTAATGATTTATGTATTTATGCATCAGATAGACAGGGTGAAT CTTGAGATCCAACAGGCTGAGCGGGAGTATGATCTTAATCATGCTGCTGAATTGAAGTATGGCAGCCTGAACTCCTTGCA ACGACAACTCGAAACTGCAGAGAAGGAATTAGATGAATATATGAACTCTGGGGAGTCTATGCTGAGAGAGGAAGTTACAG GAAGTGATATTGCTGAAATCGTAAGCAAGTGGACTGGTATACCTGTTTCAAAACTCCAACAATCCGAAAGGGAGAAGTTG TTGTATTTAGAGGAAGTTCTCCACAGGCGCGTTGTAGGTCAAGACCCTGCAGTTAGGGCAGTAGCCGAGGCTATCCAACG TTCTAGAGCCGGTCTCTCAGATCCTCATCGTCCAATAGCTAGTTTCATGTTTATGGGACCTACAGGTGTAGGAAAGACAG AGCTGGCTAAGACACTTGCGTCCTACATGTTCAACACAGAAGAAGCACTTGTACGAATTGACATGAGTGAGTACATGGAA AAGCACGCAGTTTCAAGATTGATCGGGGCACCGCCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTCACTGAAACAGT TCGTCGCAGACCGTATTCTGTTATTTTGTTTGATGAGATTGAGAAGGCACATGCTGATGTCTTCAATGTGTTCCTTCAAA TTCTGGATGATGGAAGAGTAACCGACTCACAGGGCCGCACAGTGAGTTTCACCAACACAGTTATCATTATGACCTCAAAT GTTGGATCACAGTACATTCTCAACACCGATGACGATAGTGTGCCAAAAGAATCAACTTATGAAACAATAAAAAACCGGGT AATGGATGCTGCAAGGTCCATCTTTCGCCCTGAGTTCATGAATAGAGTTGACGAGTATATTGTTTTCCAGCCTTTAGACC GTGATCAAATTAGTAGCATTGTCAGATTACAGGTAATCTCACTCTCCCCTCCCTCTCAAAAATTGTTCAATTGCTGTGTT CTAACAGTTATTACAAATTCTTGAGTTTAGGTTAACTTGCATTCATGAGTACTTATTCGTACAATGCGTTCAGGTGAACA ACTTAATTGAACACTTATAGGTATAAGTACTTATTCATAAGCTAATATGAACAATTTATGAAAATAAGCTCAAAACAACT TATTGGGTATGTCATAAACTATTTACATAAGCTCTTCCATACACTTGCATAGACATTTATGTTATAGGATAAGTTCAAAT AAACTATTTCAAAATCCAAACATTGAGATAAGTTCAAGTCAAAATACAGGCTGCTATGTTCACACTCCTCAGCCTCCTCT CTTCCAAAAATTGTTTGATTCCTGTTTTCTAACAATTATTACTAGCATTGTTTATTGTTTAGTTCTTGTGTATCTGTAAG AAACTAGTTTGGGATTTCTTTTGCGATCATTGAGAAGCTTGAAGTTAAAATAAGGACTTCTATGTTCTCACCAAAATAAG ACACATGGTGTGTGGGTTTGCTATAATTCTAAGCTTCAAACCATGTTAGTGGACCTTAAGAAAACATCGACATTTAACCG GTTTTATGTCTCTGATGTTTCGTGTTTGATTTGTGGAAGTACTAGCTAAGAAACTGTCAATTTCATTAAGAGTCTTCTTT CAAGATTGCAAGTTATTCTTGTATGGTACATGCCTAATCTCTCTCTTTTCCGTTTTCTTGGGTTTATTACAGTTGGAGCG TGTTCAGAAGAGAATTGCAGACCGCAAGATGAAAATCCATGTGACAGATGCAGCTGTCCAAGTTCTTGGGAGTTTGGGGT ATGACCCTAACTATGGTGCTAGGCCAGTGAAGCGAGTGATTCAGCAGAATGTAGAGAATGAACTTGCCAAGGGTATTTTG AGAGGAGAGTTTAAGGATGAGGACACAATATTAATAGACACTGAACTCACAGCATTTGGCAAAGGTCAACTTCCCCAGCA AAAGCTAGTTTTTAGGAAGCTTGAGGCTGAGTCAGAACCCACCACTCGTGACAGCTTGGAACCATCTCCTAGTACCAATT GA
CDS sequence (LotjaGi1g1v0509100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTGGCAGGCGATAGTTTCATCGCCGGAGGTAGCAAAAGAAAACAAGCATCAGATTGTGGAGACAGAGCACTTGAT GAAGGCCTTGTTGGAGCAGAAGAATGGACTTGCTCGCAGGATCTTTTCCAAGGTTGGGGTGGATAACACTCGGCTACTAG AAGCTACTGATAAGTACATTCAGCGGCAACCAAAGGTTCTAGGAGAATCAGGTGGCTCAATGTTGGGGCGTGATTTGGAG GCATTGATTCAGAGAGCCAGGGACTACAGGAAAGAGTATGAGGATTCATTTGTGTCAGTTGAGCACTTGGTTCTCGGTTT TTCCCAAGATCAACGACTTGGGAAACAGTTATTTAGAGAATTTCAAGTATCTCAGCAGGCTCTAAAATCTGCAATAGAGT CCATTAGGGGACGCCAGTCGGTTATTGACCAAGATCCTGAAGGGAAGTATGAAGCTTTGGAAAAATATGGAAAGGATTTG ACGGCAATGGCTAAAGCAGGAAAACTTGATCCAGTCATAGGAAGAGATGATGAAATACGCAGGTGCATCCAAATTCTTTC CAGGAGAACAAAGAACAATCCTGTGCTAATTGGTGAGCCTGGTGTTGGGAAGACTGCAATTTCTGAAGGACTTGCTCAGA GGATTGTGCAAGGAGATGTTCCTCAAGCTTTGATGAACCGTAGGCTTATATCCCTTGATATGGGTGCACTTATTGCTGGA GCAAAGTACCGTGGTGAATTCGAGGATAGGCTGAAAGCTGTTCTTAAAGAAGTAACAGAATCTGATGGCCAGACTATCCT TTTCATTGATGAGATTCATACAGTTGTTGGGGCAGGTGCCACAAATGGTGCTATGGATGCTGGAAATCTCTTAAAGCCCA TGCTTGGTCGGGGGGAGCTGCGCTGTATTGGAGCAACAACACTGGATGAGTATAGGAAGTATATTGAGAAGGACCCTGCG CTAGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAACCTACCGTCGAAGATACCATTTCAATACTAAGGGGACTGCGGGA AAGGTATGAGCTACATCATGGAGTCCGAATTTCTGACAGTGCACTTGTTGAAGCTGCAATTCTCTCCGATCGATATATCA GCGGGAGATTTTTGCCTGACAAAGCTATTGATCTAGTTGATGAGGCAGCTGCCAAACTGAAAATGGAAATAACTTCTAAA CCTACTGCACTTGATGAGATCAATCGGGCAGTCCTGAAAATGGAGATGGAGAGACTCTCTCTCATGAATGATACCGACAA GGCTTCTAAAGATAGGCTGAGTCGTCTTGAGGCAGAGCTCTCTCTCTTGAAAGAGAAACAGGTTGAGCTGACTGAACAGT GGGAGCATGAAAAGTCTGTCATGACTCGTATCCAATCAATCAAAGAAGAGATAGACAGGGTGAATCTTGAGATCCAACAG GCTGAGCGGGAGTATGATCTTAATCATGCTGCTGAATTGAAGTATGGCAGCCTGAACTCCTTGCAACGACAACTCGAAAC TGCAGAGAAGGAATTAGATGAATATATGAACTCTGGGGAGTCTATGCTGAGAGAGGAAGTTACAGGAAGTGATATTGCTG AAATCGTAAGCAAGTGGACTGGTATACCTGTTTCAAAACTCCAACAATCCGAAAGGGAGAAGTTGTTGTATTTAGAGGAA GTTCTCCACAGGCGCGTTGTAGGTCAAGACCCTGCAGTTAGGGCAGTAGCCGAGGCTATCCAACGTTCTAGAGCCGGTCT CTCAGATCCTCATCGTCCAATAGCTAGTTTCATGTTTATGGGACCTACAGGTGTAGGAAAGACAGAGCTGGCTAAGACAC TTGCGTCCTACATGTTCAACACAGAAGAAGCACTTGTACGAATTGACATGAGTGAGTACATGGAAAAGCACGCAGTTTCA AGATTGATCGGGGCACCGCCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTCACTGAAACAGTTCGTCGCAGACCGTA TTCTGTTATTTTGTTTGATGAGATTGAGAAGGCACATGCTGATGTCTTCAATGTGTTCCTTCAAATTCTGGATGATGGAA GAGTAACCGACTCACAGGGCCGCACAGTGAGTTTCACCAACACAGTTATCATTATGACCTCAAATGTTGGATCACAGTAC ATTCTCAACACCGATGACGATAGTGTGCCAAAAGAATCAACTTATGAAACAATAAAAAACCGGGTAATGGATGCTGCAAG GTCCATCTTTCGCCCTGAGTTCATGAATAGAGTTGACGAGTATATTGTTTTCCAGCCTTTAGACCGTGATCAAATTAGTA GCATTGTCAGATTACAGTTGGAGCGTGTTCAGAAGAGAATTGCAGACCGCAAGATGAAAATCCATGTGACAGATGCAGCT GTCCAAGTTCTTGGGAGTTTGGGGTATGACCCTAACTATGGTGCTAGGCCAGTGAAGCGAGTGATTCAGCAGAATGTAGA GAATGAACTTGCCAAGGGTATTTTGAGAGGAGAGTTTAAGGATGAGGACACAATATTAATAGACACTGAACTCACAGCAT TTGGCAAAGGTCAACTTCCCCAGCAAAAGCTAGTTTTTAGGAAGCTTGAGGCTGAGTCAGAACCCACCACTCGTGACAGC TTGGAACCATCTCCTAGTACCAATTGA
Protein sequence (LotjaGi1g1v0509100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKVGVDNTRLLEATDKYIQRQPKVLGESGGSMLGRDLE ALIQRARDYRKEYEDSFVSVEHLVLGFSQDQRLGKQLFREFQVSQQALKSAIESIRGRQSVIDQDPEGKYEALEKYGKDL TAMAKAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISLDMGALIAG AKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA LERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSK PTALDEINRAVLKMEMERLSLMNDTDKASKDRLSRLEAELSLLKEKQVELTEQWEHEKSVMTRIQSIKEEIDRVNLEIQQ AEREYDLNHAAELKYGSLNSLQRQLETAEKELDEYMNSGESMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLYLEE VLHRRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKTLASYMFNTEEALVRIDMSEYMEKHAVS RLIGAPPGYVGYEEGGQLTETVRRRPYSVILFDEIEKAHADVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY ILNTDDDSVPKESTYETIKNRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERVQKRIADRKMKIHVTDAA VQVLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILIDTELTAFGKGQLPQQKLVFRKLEAESEPTTRDS LEPSPSTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 874 | 874 | 0.0 | – | |
| PANTHER | 1 | 874 | 874 | 0.0 | – | |
| Gene3D | 1 | 142 | 142 | 2.5E-31 | ||
| ProSiteProfiles | 1 | 138 | 138 | 46.599 | – | |
| SUPERFAMILY | 2 | 148 | 147 | 9.52E-35 | ||
| TIGRFAM | 3 | 850 | 848 | 0.0 | ||
| Pfam | 11 | 60 | 50 | 4.7E-15 | ||
| Pfam | 86 | 137 | 52 | 7.0E-11 | ||
| Gene3D | 149 | 339 | 191 | 1.5E-75 | – | |
| SUPERFAMILY | 151 | 541 | 391 | 2.53E-99 | ||
| CDD | 173 | 328 | 156 | 1.81986E-22 | – | |
| SMART | 190 | 334 | 145 | 2.0E-9 | ||
| Pfam | 195 | 327 | 133 | 3.1E-13 | ||
| ProSitePatterns | 286 | 298 | 13 | - | ||
| Pfam | 334 | 436 | 103 | 1.4E-33 | ||
| Gene3D | 340 | 540 | 201 | 9.6E-71 | – | |
| Coils | 426 | 453 | 28 | - | – | |
| Coils | 464 | 484 | 21 | - | – | |
| Coils | 491 | 525 | 35 | - | – | |
| SUPERFAMILY | 542 | 848 | 307 | 4.26E-82 | ||
| Gene3D | 545 | 765 | 221 | 1.3E-86 | – | |
| CDD | 567 | 715 | 149 | 1.34097E-18 | – | |
| Pfam | 592 | 760 | 169 | 3.1E-56 | ||
| SMART | 593 | 768 | 176 | 1.6E-8 | ||
| PRINTS | 597 | 615 | 19 | 2.4E-40 | ||
| ProSitePatterns | 627 | 645 | 19 | - | ||
| PRINTS | 642 | 660 | 19 | 2.4E-40 | ||
| PRINTS | 671 | 689 | 19 | 2.4E-40 | ||
| PRINTS | 704 | 718 | 15 | 2.4E-40 | ||
| Pfam | 767 | 846 | 80 | 1.3E-25 | ||
| Gene3D | 767 | 863 | 97 | 1.9E-27 | – | |
| SMART | 767 | 853 | 87 | 1.1E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Response to heat | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. | ||
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. | ||
| Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of LotjaGi1g1v0509100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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