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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0421200 |
| Transcript ID | LotjaGi4g1v0421200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease ATP-binding subunit ClpB; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A1J7GIN0|A0A1J7GIN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79625667..79631104) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTTGATACTTGATATGCCTTAATGTTTTCATAGGATTTTTATACTGTTGATATGCTGAAGAAACATACACATTTAGT TATCTGGGTGCATTTTGTGTAATTTCAATTCAAGTGTCTTACTTGTCTGTTGACATGTTTTCATCAATGCAGCGAGCAAT TCAGGAATCATGTCTAGGGTTTTGGCTCAGTCAATTACTATCCCTGGCTTAGTGTGTGGGCGAAGTCATGGTCATAATAA CAGGTCCACAATGTCGAGAAGATCTCTAAAAATGATGTCTACCTTACAAGCACCTGCGTTAAGAATGTCAGGATTCTCAG GACTGCGTACTTATAATAATTTGGATACAATGTTGAGACCTGGACTAGATTTTCGTTCTAAGGTGTTTGGTGTAACTACC TCCCGAAAGGCAAGGGCTAGCAGATGCATACCTAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAGGTTATTAT GCTTTCCCAGGAGGAGGCGAGACGGCTGGGTCATAATTTTGTTGGAACAGAACAGATCCTGTTGGGTCTTGTTGGTGAAG GCACTGGTATTGCTGCTAGGGTTTTGAAGGCTATGGGGATTAGCCTTAAAGATGCACGCGTGGAAGTGGAAAAGACCATT GGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAGGA GGCTCGTCAGCTTGGTAAGTGCTATCCTACCTTTACCCACAAAGTGTTTTGATTAATGAAAAGTTTCTTCTTTGTAATCA ACCTTACCAGTTTGCCTTGGTTTTCGTTTGTCTTTGTTGTTTGAAAGATAGTGGAAGTGATTTGGTTATATTTTGTTTGT TAAGGTGCATTTATCTATTTTACTTGAAGAGTAACCTAGGTTTTGATGATTAATGAAAATAGAGGAAAGAAGTAAACAGG TGATAATTTTCTTTTTTGGAATCATCTGTCCATTTCGGACCAGTTTTCCATAGTTTTTTCTTTGGTCTTTGGTGTCTGAA AGAATGTAGAAGTGATTTGGTCCTGTGCATTTATCTATTTTACTTGAAGAGTCACCTAGGTTATTGATTTTATAGAAAAA AGAGGAAGGAAGATAGTAACAGGGCATTGGTAAACTACCTTACTGTATAAAGTTTCACTCACAATCCCCTAAAAGTGAAT GGAGTGGAGAGAAGTGTGAAATAGGAAGATAAGAGAGAGAAAGTGAGAGATTTGATGGATGATATGATTGAAAGAGAAGA GAGAGATAGATAGAAAGTAAAGGTTGACATGAAGTGAGAGTGTGGTAATGAAATGAAGCATATCTCATTTTATTTTGGGG TGGATGTATGCAATATTTCGTCTTCACTTGATGAAACAGTTGGGCTTACTCCTTGAAATTTTCAGGTCACAACTATATTG GGTCTGAGCACTTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTCAAGACCTGGGTGCTGAT CCTAACAATATTCGCGCTCAGGTTGCTATTATATCCTCATTTATTCCTTTTCTCACATACTTCTATTATATATGGATACG TCTTATATCTTTAATTTTTTGTTAATCTTGTACACCACTGGGTGGGAACAGGTTATTCGCATGGTTGGTGAGAGTAACAA TGAAACGGCTGGGGTTGCTGTTGGCCGCGGAGGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGAACCAATTTGA CCAAGCTAGCAAATGAGGTAATTACCAGTTCCTAGTTTTCTTCACGACAGATAGGAGATAGGTTTTTTGTGTTTTTAAAA GCATACTTATTTTCTTCCACCCCCCCCTAAAAATAAAAAATCCCAGGGAAAATTGGACCCTGTTGTGGGTAGGCAGCAAC AAATTGAACGTGTCATTCAAATTTTGGGTCGTCGTACCAAAAATAATCCTTGTCTTGTCGGCGAGCCTGGTGTTGGAAAG ACAGCTATTGCCGAAGGTCTTGCTCAACGGATTGCAACTGGTGATGTCCCTGAAACCATAGAGGGAAAGGAGGTTAGTAT GAATTATTTTACGTTGGTTTCATTCAGGGGATTTGCTGTTGTATTATCAGCTTTATTACCAACTTGCTTGGAGCACCCTG CCTTATTTTCAGTCATTGGATTTGTGATATAAATTTTGCATTTGTTTTTGGTTACGTATTTAATATATTTATTTAATTAT TAGATTTGGTGTTTTATCACACTTTTGGGGATAATGAAAGTTTCGTCTTTGCATGATTAGGTAATAACCCTTGATATGGG TCTACTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAGCTAATGGAGGAAATCAAACAAAACG ATAATATAATACTTTTCATTGATGAAGTTCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTGATGCTGCAAAC ATATTAAAACCCGCTCTTGCCAGAGGGGAACTACAGGTAATATTTCCCTTGACAACACTGTTTATTATCGAAGAAACACA TTTTTAACAGTTCAATCTAGGTTAAGACTAATAGCCTAAAAATTCAAAATGATCACCTATGAAGCATGGGTACTTCATCT TGGCTGCTGTATATGATCCAGTTACATACCCGTGCCTGGCTTTTGTTGGGTACTTAAAAATATGTACCGGGTAAGTTCCA GATAAATTTTCTACATATAAAAAGAAATTAGGTACTGTTTGGGTAAATTTTGGGTACTTCTTAAGTACAGATTAACCAAA ACTAAATATTTTTTATCAGCTTTTTTCATTTTATGTATACAAAATGAAACCCCTACCCGTATCACACACCTAAGGACACT GATACCCTATCCTTGCCATCAATCATATCTAACAATTGTCTTGTTCTTTCATGGCCAATGCTCGCCTGCATTGGATGATA ATGGATAAGTTAATAAATCAAGTTTCCTCTCTTGCGTCGTGCATAAATCCTCTTGTTTTACCTATACCTTATTTTTTTTT TATAATCTTGTACCTTGTACCCGCACCTGGTACTGGTACAGTAGACTTATGGTGAAATGTGAAGACATATGGTTATATAA TGATTATATCTAGACTAAACATGCCACTATTACTTATTTGGAACTGGTCCAAAAAATTGTCTGGGTATTATATGCAGTGT ATAGGAGCCACAACACTGGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCGATTCCAGCCAGTTAG AGTGCCGGAGCCAACCGTGGATGAATCCATACAAATACTGAGAGGACTTAGAGAACGCTATGAGAGGCACCACAAGCTCA GTTATACAGATGATGCTCTTGTAGCTGCTTCACAGCTGTCACATCAATATATCAGGTTTGTCATAATTTATACATCTGCA CTTTCTCTATTCATTTTCCTTTTCATTTATGCTGTAAGGGAATATTTCTTTTAGTTGTTATTTACATGATCAAACTGAAC TTTTCACTGAATTTATGTTAATCTTCTGGAATATAGCATTATGTCTTTGAATTGTTGTCCGACAATTATTTGAGACTGTG ATTCAGTTGTTTCATATAAATGAATCTAAGTTCTACTTTATTATCTTGTTATTTTCTTAATGTTGTGTATCTTTGATAAT TTCTGGCTTATAAAAAATGGTGCTTCGTGCAGTGATCGGTTTTTGCCTGACAAAGCTATCGATTTGATTGATGAAGCTGG TTCCCGAGTCCGTCTTCGACATGCACAGGTACATTGTTTCGCTCCCCTCCCTGAATCAACAGTTAATCATTTGTCTATTG TTGATCTAATTGGACCATATTTCCATATTTACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTCAGGCAGATTG TGAAGGAGAAAGATGAAGCTGTTCGCAACCAAGACTTTGAAAAGGTAATGCTTTTATCTGAGATTTAACTTGTAACGTTT TCAGGATATAATACAACCTTAGTCCAATGAGTAGCCTTGTTTGTCTTCAAAAAGTGATGTTTTACCTTTCAGTGAACATT GAGAAAATGTAGGGTTTGTTTTTTTTTTTTTTCAAAAGTTCTGATCTATTTCTAGTTTATTGAGTGTAAAGTGCATGTAG TGTTTTTATTCTTGTTCAATTATACCAATTACGTCTCCAAATTCACTCACTTTTTGGCTTATAATTTCCGGGCTTGATGA TACATGGTTTTCTGAACAGGCTGGAGAGCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAGCACTTATAGAAA AAGGCAAGGAGATGAGTAAGGCAGAGAGTGAGGCCGATGGTGCAGGTCCAGTTGTGACTGAAGTTGACATACAACATATT GTGGCCTCCTGGACTGGTGTTCCTGTTGACAAAGTATCGTCAGATGAATCTGATCGCCTTCTCAAGATGGAAGAGACATT ACACAAGCGAGTTATTGGTCAGGATGAAGCAGTAAAAGCCATTTGCAGGGCTATCCGTCGAGCCCGGGTTGGACTGAAGA ACCCTAATCGTCCAATTGCAAGCTTTATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCCGAGTTGGCCAAAACACTGGCT TCATACTACTTTGGTTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGTGTCCAAGCT CATCGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAAGCAGTCCGACGCCGTCCCTACACTG TTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTA ACAGACAGTAAGGGGAGAACTGTGGACTTCAAGAACACCCTTCTTATAATGACATCGAACGTTGGAAGCAGCGTGATTGA GAAAGGAGGACGTAAAATAGGATTTGACCTTGATTATGATGAGAAGGACAGCTCTTATAATCGAATCAAGAGCTTGGTGA CTGAGGAGCTAAAGCAGTACTTTAGGCCTGAGTTTTTGAATAGGTTGGACGAAATGATTGTTTTCAGGCAACTCACAAAG CTGGAGGTGAAGGAGATAGCTGATATAATGCTGAAGGAGGTATTTGACAGACTGAAAACCAAAGAAATTGATCTTTCAGT GACAGAGAGATTTAGGGATAGAGTGGTTGAAGAAGGTTATGATCCTAGTTATGGGGCAAGGCCTCTAAGACGAGCCATAA TGCGGCTCTTGGAGGACAGCATGGCAGAGAAGATGCTTGCTGGAGAGATTAAAGAGGGTGACTCTGTTATAATTGATGCT GATTCTGATGGTAAGGTGATTGTGCTCAATGGTAGTAGTGGTGCACCAGAATCACTGCCAGAGGCTCTTCCTGTGTAA
CDS sequence (LotjaGi4g1v0421200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAGGGTTTTGGCTCAGTCAATTACTATCCCTGGCTTAGTGTGTGGGCGAAGTCATGGTCATAATAACAGGTCCAC AATGTCGAGAAGATCTCTAAAAATGATGTCTACCTTACAAGCACCTGCGTTAAGAATGTCAGGATTCTCAGGACTGCGTA CTTATAATAATTTGGATACAATGTTGAGACCTGGACTAGATTTTCGTTCTAAGGTGTTTGGTGTAACTACCTCCCGAAAG GCAAGGGCTAGCAGATGCATACCTAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAGGTTATTATGCTTTCCCA GGAGGAGGCGAGACGGCTGGGTCATAATTTTGTTGGAACAGAACAGATCCTGTTGGGTCTTGTTGGTGAAGGCACTGGTA TTGCTGCTAGGGTTTTGAAGGCTATGGGGATTAGCCTTAAAGATGCACGCGTGGAAGTGGAAAAGACCATTGGAAGGGGT AGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAGGAGGCTCGTCA GCTTGGTCACAACTATATTGGGTCTGAGCACTTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTA TTCGCATGGTTGGTGAGAGTAACAATGAAACGGCTGGGGTTGCTGTTGGCCGCGGAGGTAGTAGCAATAAGATGCCAACT TTGGAGGAGTATGGAACCAATTTGACCAAGCTAGCAAATGAGGGAAAATTGGACCCTGTTGTGGGTAGGCAGCAACAAAT TGAACGTGTCATTCAAATTTTGGGTCGTCGTACCAAAAATAATCCTTGTCTTGTCGGCGAGCCTGGTGTTGGAAAGACAG CTATTGCCGAAGGTCTTGCTCAACGGATTGCAACTGGTGATGTCCCTGAAACCATAGAGGGAAAGGAGGTAATAACCCTT GATATGGGTCTACTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAGCTAATGGAGGAAATCAA ACAAAACGATAATATAATACTTTTCATTGATGAAGTTCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTGATG CTGCAAACATATTAAAACCCGCTCTTGCCAGAGGGGAACTACAGTGTATAGGAGCCACAACACTGGATGAATACAGGAAG CACATTGAAAAAGATCCAGCTTTGGAAAGGCGATTCCAGCCAGTTAGAGTGCCGGAGCCAACCGTGGATGAATCCATACA AATACTGAGAGGACTTAGAGAACGCTATGAGAGGCACCACAAGCTCAGTTATACAGATGATGCTCTTGTAGCTGCTTCAC AGCTGTCACATCAATATATCAGTGATCGGTTTTTGCCTGACAAAGCTATCGATTTGATTGATGAAGCTGGTTCCCGAGTC CGTCTTCGACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAAGATGA AGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAGCAC TTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAGAGTGAGGCCGATGGTGCAGGTCCAGTTGTGACTGAAGTTGACATA CAACATATTGTGGCCTCCTGGACTGGTGTTCCTGTTGACAAAGTATCGTCAGATGAATCTGATCGCCTTCTCAAGATGGA AGAGACATTACACAAGCGAGTTATTGGTCAGGATGAAGCAGTAAAAGCCATTTGCAGGGCTATCCGTCGAGCCCGGGTTG GACTGAAGAACCCTAATCGTCCAATTGCAAGCTTTATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCCGAGTTGGCCAAA ACACTGGCTTCATACTACTTTGGTTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGT GTCCAAGCTCATCGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAAGCAGTCCGACGCCGTC CCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGAT GGAAGGCTAACAGACAGTAAGGGGAGAACTGTGGACTTCAAGAACACCCTTCTTATAATGACATCGAACGTTGGAAGCAG CGTGATTGAGAAAGGAGGACGTAAAATAGGATTTGACCTTGATTATGATGAGAAGGACAGCTCTTATAATCGAATCAAGA GCTTGGTGACTGAGGAGCTAAAGCAGTACTTTAGGCCTGAGTTTTTGAATAGGTTGGACGAAATGATTGTTTTCAGGCAA CTCACAAAGCTGGAGGTGAAGGAGATAGCTGATATAATGCTGAAGGAGGTATTTGACAGACTGAAAACCAAAGAAATTGA TCTTTCAGTGACAGAGAGATTTAGGGATAGAGTGGTTGAAGAAGGTTATGATCCTAGTTATGGGGCAAGGCCTCTAAGAC GAGCCATAATGCGGCTCTTGGAGGACAGCATGGCAGAGAAGATGCTTGCTGGAGAGATTAAAGAGGGTGACTCTGTTATA ATTGATGCTGATTCTGATGGTAAGGTGATTGTGCTCAATGGTAGTAGTGGTGCACCAGAATCACTGCCAGAGGCTCTTCC TGTGTAA
Protein sequence (LotjaGi4g1v0421200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRVLAQSITIPGLVCGRSHGHNNRSTMSRRSLKMMSTLQAPALRMSGFSGLRTYNNLDTMLRPGLDFRSKVFGVTTSRK ARASRCIPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLVGEGTGIAARVLKAMGISLKDARVEVEKTIGRG SGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGESNNETAGVAVGRGGSSNKMPT LEEYGTNLTKLANEGKLDPVVGRQQQIERVIQILGRRTKNNPCLVGEPGVGKTAIAEGLAQRIATGDVPETIEGKEVITL DMGLLVAGTKYRGEFEERLKKLMEEIKQNDNIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRK HIEKDPALERRFQPVRVPEPTVDESIQILRGLRERYERHHKLSYTDDALVAASQLSHQYISDRFLPDKAIDLIDEAGSRV RLRHAQLPEEARELDKEVRQIVKEKDEAVRNQDFEKAGELRDREMDLKTQISALIEKGKEMSKAESEADGAGPVVTEVDI QHIVASWTGVPVDKVSSDESDRLLKMEETLHKRVIGQDEAVKAICRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAK TLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILED GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQ LTKLEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVI IDADSDGKVIVLNGSSGAPESLPEALPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 16 | 13 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 908 | 887 | - | – | |
| PANTHER | 64 | 907 | 844 | 0.0 | – | |
| PANTHER | 64 | 907 | 844 | 0.0 | – | |
| Gene3D | 90 | 230 | 141 | 4.4E-52 | ||
| ProSiteProfiles | 92 | 234 | 143 | 39.447 | – | |
| SUPERFAMILY | 93 | 203 | 111 | 2.49E-27 | ||
| Pfam | 106 | 158 | 53 | 1.7E-15 | ||
| Pfam | 182 | 218 | 37 | 6.8E-13 | ||
| Gene3D | 231 | 421 | 191 | 8.9E-75 | – | |
| SUPERFAMILY | 238 | 517 | 280 | 6.81E-78 | ||
| CDD | 261 | 413 | 153 | 1.04408E-22 | – | |
| SMART | 278 | 418 | 141 | 2.1E-13 | ||
| Pfam | 283 | 399 | 117 | 1.6E-14 | ||
| Coils | 332 | 352 | 21 | - | – | |
| ProSitePatterns | 373 | 385 | 13 | - | ||
| Pfam | 421 | 522 | 102 | 5.3E-35 | ||
| Gene3D | 422 | 553 | 132 | 4.3E-39 | – | |
| Coils | 491 | 511 | 21 | - | – | |
| ProSiteProfiles | 495 | 530 | 36 | 11.605 | ||
| Gene3D | 554 | 799 | 246 | 2.3E-97 | – | |
| SUPERFAMILY | 570 | 887 | 318 | 2.11E-79 | ||
| CDD | 595 | 743 | 149 | 3.85271E-17 | – | |
| Pfam | 620 | 794 | 175 | 1.9E-55 | ||
| SMART | 621 | 802 | 182 | 2.6E-9 | ||
| PRINTS | 625 | 643 | 19 | 6.0E-41 | ||
| ProSitePatterns | 655 | 673 | 19 | - | ||
| PRINTS | 670 | 688 | 19 | 6.0E-41 | ||
| PRINTS | 699 | 717 | 19 | 6.0E-41 | ||
| PRINTS | 732 | 746 | 15 | 6.0E-41 | ||
| Gene3D | 801 | 900 | 100 | 3.1E-27 | – | |
| SMART | 801 | 891 | 91 | 8.3E-33 | ||
| Pfam | 801 | 880 | 80 | 2.7E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi4g1v0421200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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