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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:3.10.450.40
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 50 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.029s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0086469.1
n.a. Primary amine oxidase [Medicago truncatula] gi|357461827|ref|XP_003601195.1| chr0 34931449 34935022 +
1 domain prediction
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Lj0g3v0161909.1
n.a. PREDICTED: primary amine oxidase-like [Glycine max] gi|356557184|ref|XP_003546898.1| chr0 76231408 76232317 -
1 domain prediction
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Lj0g3v0161929.1
n.a. Primary amine oxidase [Medicago truncatula] gi|357462275|ref|XP_003601419.1| chr0 76233746 76239168 -
1 domain prediction
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Lj0g3v0278169.1
n.a. PREDICTED: copper methylamine oxidase-like isoform X1 [Cicer arietinum] gi|502154328|ref|XP_004509661.1| chr0 144444727 144451569 -
1 domain prediction
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Lj0g3v0343529.1
n.a. Protein DCL [Medicago truncatula] gi|357515123|ref|XP_003627850.1| chr0 180084520 180087136 +
1 domain prediction
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Lj0g3v0348139.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Glycine max] gi|356509751|ref|XP_003523609.1| chr0 182699025 182703297 -
1 domain prediction
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Lj0g3v0361049.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Cicer arietinum] gi|502126879|ref|XP_004499475.1| chr0 190198547 190201217 +
1 domain prediction
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Lj0g3v0361059.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Cicer arietinum] gi|502126879|ref|XP_004499475.1| chr0 190198547 190201721 +
1 domain prediction
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Lj1g3v1650160.1
n.a. Protein DCL [Medicago truncatula] gi|357465527|ref|XP_003603048.1| chr1 19789426 19793964 +
1 domain prediction
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Lj1g3v1686750.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Glycine max] gi|356509751|ref|XP_003523609.1| chr1 20027328 20030448 +
1 domain prediction
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Lj1g3v1686770.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Glycine max] gi|356509751|ref|XP_003523609.1| chr1 20032332 20034853 +
1 domain prediction
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Lj1g3v1686780.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Glycine max] gi|356509751|ref|XP_003523609.1| chr1 20036455 20040727 +
1 domain prediction
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Lj2g3v1242220.1
n.a. PREDICTED: primary amine oxidase-like [Glycine max] gi|356495099|ref|XP_003516418.1| chr2 19685099 19688962 -
1 domain prediction
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Lj4g3v1635280.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Cicer arietinum] gi|502152038|ref|XP_004508733.1| chr4 24037136 24039278 +
1 domain prediction
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Lj4g3v1635280.2
n.a. Uncharacterized protein TCM_014003 [Theobroma cacao] gi|508774600|gb|EOY21856.1| chr4 24037460 24039278 +
1 domain prediction
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Lj4g3v2376120.1
n.a. PREDICTED: primary amine oxidase-like [Cicer arietinum] gi|502151254|ref|XP_004508350.1| chr4 32884578 32888140 +
1 domain prediction
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Lj5g3v2046150.1
n.a. PREDICTED: primary amine oxidase-like [Cicer arietinum] gi|502119794|ref|XP_004496741.1| chr5 29518458 29522850 +
1 domain prediction
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Lj5g3v2046160.1
n.a. Primary amine oxidase [Medicago truncatula] gi|357444253|ref|XP_003592404.1| chr5 29518458 29526198 -
1 domain prediction
 –
LotjaGi1g1v0196200.2
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|G7J4S8|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200 LjG1.1_chr1 39105636 39119135 -
1 domain prediction
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LotjaGi1g1v0196200.3
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|G7J4S8|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200 LjG1.1_chr1 39105974 39118302 -
1 domain prediction
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LotjaGi1g1v0196200.4
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|G7J4S8|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200 LjG1.1_chr1 39105974 39118486 -
1 domain prediction
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LotjaGi1g1v0196200.5
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|G7J4S8|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200 LjG1.1_chr1 39105974 39118545 -
1 domain prediction
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LotjaGi1g1v0196200.6
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|G7J4S8|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200 LjG1.1_chr1 39105974 39118557 -
1 domain prediction
 –
LotjaGi1g1v0196200.7
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|G7J4S8|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200 LjG1.1_chr1 39106030 39118486 -
1 domain prediction
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LotjaGi1g1v0220000.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT5G62440.1 EMB514 (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|V7AZY8|V7AZY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0220000 LjG1.1_chr1 48942769 48945899 +
1 domain prediction
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LotjaGi1g1v0355300.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT1G45230.1 DCL protein (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|I3S0R7|I3S0R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0355300 LjG1.1_chr1 82672630 82677907 +
1 domain prediction
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LotjaGi1g1v0357800.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT3G46630.1 DCL protein (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|A0A0S3RB30|A0A0S3RB30_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0357800 LjG1.1_chr1 83153487 83156743 +
1 domain prediction
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LotjaGi2g1v0292700.1
n.a. Amine oxidase; TAIR: AT1G31710.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q43077|AMO_PEA Primary amine oxidase; TrEMBL-Plants: tr|A0A0S3T1X4|A0A0S3T1X4_PHAAN Amine oxidase; Found in the gene: LotjaGi2g1v0292700 LjG1.1_chr2 76719019 76723077 -
1 domain prediction
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LotjaGi2g1v0430800.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 LjG1.1_chr2 92756343 92770718 -
1 domain prediction
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LotjaGi2g1v0430800.2
n.a. DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 LjG1.1_chr2 92756394 92770683 -
1 domain prediction
 –
LotjaGi2g1v0430800.3
n.a. DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 LjG1.1_chr2 92756470 92770669 -
1 domain prediction
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LotjaGi2g1v0430800.4
n.a. DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 LjG1.1_chr2 92756498 92767388 -
1 domain prediction
 –
LotjaGi3g1v0318900.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT2G40030.1 nuclear RNA polymerase D1B; Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|K7M0Q7|K7M0Q7_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi3g1v0318900 LjG1.1_chr3 67664363 67686856 -
1 domain prediction
 –
LotjaGi3g1v0318900.2
n.a. DNA-directed RNA polymerase subunit; TAIR: AT2G40030.1 nuclear RNA polymerase D1B; Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|K7M0Q7|K7M0Q7_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi3g1v0318900 LjG1.1_chr3 67664363 67687953 -
1 domain prediction
 –
LotjaGi3g1v0319100.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT2G40030.1 nuclear RNA polymerase D1B; Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|K7M0Q7|K7M0Q7_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi3g1v0319100 LjG1.1_chr3 67698559 67723889 -
1 domain prediction
 –
LotjaGi4g1v0157600.1
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07123|AMO2_ARTS1 Copper methylamine oxidase; TrEMBL-Plants: tr|A0A0S3R2H7|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600 LjG1.1_chr4 27470136 27484332 -
1 domain prediction
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LotjaGi4g1v0157600.2
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|A0A0S3R2H7|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600 LjG1.1_chr4 27470495 27483202 -
1 domain prediction
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LotjaGi4g1v0157600.3
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|A0A0S3R2H7|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600 LjG1.1_chr4 27470495 27483288 -
1 domain prediction
 –
LotjaGi4g1v0157600.4
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|A0A0S3R2H7|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600 LjG1.1_chr4 27470495 27483298 -
1 domain prediction
 –
LotjaGi4g1v0157600.5
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|A0A0S3R2H7|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600 LjG1.1_chr4 27470495 27483315 -
1 domain prediction
 –
LotjaGi4g1v0157600.6
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07123|AMO2_ARTS1 Copper methylamine oxidase; TrEMBL-Plants: tr|A0A0L9TMN1|A0A0L9TMN1_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600 LjG1.1_chr4 27470495 27483315 -
1 domain prediction
 –
LotjaGi4g1v0157600.7
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|K7MS36|K7MS36_SOYBN Amine oxidase; Found in the gene: LotjaGi4g1v0157600 LjG1.1_chr4 27470495 27483315 -
1 domain prediction
 –
LotjaGi4g1v0157600.8
n.a. Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q07121|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr|A0A0S3R2H7|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600 LjG1.1_chr4 27477010 27483298 -
1 domain prediction
 –
LotjaGi4g1v0249400.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT5G62440.1 EMB514 (DUF3223); Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|A0A0B2QEQ7|A0A0B2QEQ7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0249400 LjG1.1_chr4 60243919 60246048 +
1 domain prediction
 –
LotjaGi4g1v0349800.1
n.a. Amine oxidase; TAIR: AT1G31690.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q43077|AMO_PEA Primary amine oxidase; TrEMBL-Plants: tr|I1MRA7|I1MRA7_SOYBN Amine oxidase; Found in the gene: LotjaGi4g1v0349800 LjG1.1_chr4 72867341 72871058 -
1 domain prediction
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LotjaGi5g1v0249200.1
n.a. Amine oxidase; TAIR: AT4G12290.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q8H1H9|AMO_ARATH Primary amine oxidase; TrEMBL-Plants: tr|A0A151SZV1|A0A151SZV1_CAJCA Amine oxidase; Found in the gene: LotjaGi5g1v0249200 LjG1.1_chr5 55768642 55783225 +
1 domain prediction
 –
LotjaGi5g1v0249200.2
n.a. Amine oxidase; TAIR: AT4G12290.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q8H1H9|AMO_ARATH Primary amine oxidase; TrEMBL-Plants: tr|G7J7B0|G7J7B0_MEDTR Amine oxidase; Found in the gene: LotjaGi5g1v0249200 LjG1.1_chr5 55768642 55783225 +
1 domain prediction
 –
LotjaGi5g1v0249200.3
n.a. Amine oxidase; TAIR: AT4G12290.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q8H1H9|AMO_ARATH Primary amine oxidase; TrEMBL-Plants: tr|G7J7B0|G7J7B0_MEDTR Amine oxidase; Found in the gene: LotjaGi5g1v0249200 LjG1.1_chr5 55771649 55775802 +
1 domain prediction
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LotjaGi5g1v0314400.1
n.a. Amine oxidase; TAIR: AT4G14940.1 amine oxidase 1; Swiss-Prot: sp|O23349|AO1_ARATH Primary amine oxidase 1; TrEMBL-Plants: tr|I1NGE1|I1NGE1_SOYBN Amine oxidase; Found in the gene: LotjaGi5g1v0314400 LjG1.1_chr5 63266645 63271223 +
1 domain prediction
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LotjaGi5g1v0314500.1
n.a. Amine oxidase; TAIR: AT1G31690.1 Copper amine oxidase family protein; Swiss-Prot: sp|Q43077|AMO_PEA Primary amine oxidase; TrEMBL-Plants: tr|G7ID65|G7ID65_MEDTR Amine oxidase; Found in the gene: LotjaGi5g1v0314500 LjG1.1_chr5 63266645 63274462 -
1 domain prediction
 –