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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023313
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 116 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.618s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0063729.1
n.a. Ubiquitin-conjugating enzyme 28 isoform 1 [Theobroma cacao] gi|508719952|gb|EOY11849.1| chr0 21739113 21742134 +
2 domain predictions
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Lj0g3v0203099.1
n.a. PREDICTED: SUMO-conjugating enzyme SCE1-like [Cicer arietinum] gi|502160781|ref|XP_004511894.1| chr0 100628043 100630600 -
2 domain predictions
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Lj0g3v0293369.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Cicer arietinum] gi|502157139|ref|XP_004510772.1| chr0 152271888 152275244 -
2 domain predictions
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Lj1g3v0465660.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 2-like isoform 1 [Solanum lycopersicum] gi|460391928|ref|XP_004241570.1| chr1 6223049 6229131 +
2 domain predictions
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Lj1g3v0935410.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max] gi|356516007|ref|XP_003526688.1| chr1 11741792 11744584 +
2 domain predictions
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Lj1g3v1466220.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 1 [Glycine max] gi|356508845|ref|XP_003523164.1| chr1 17549155 17552308 -
2 domain predictions
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Lj1g3v2063210.1
n.a. PREDICTED: protein PEROXIN-4-like [Cicer arietinum] gi|502131980|ref|XP_004501180.1| chr1 24293601 24296517 +
2 domain predictions
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Lj1g3v2533810.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max] gi|356532139|ref|XP_003534631.1| chr1 29047440 29050771 -
2 domain predictions
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Lj1g3v4047170.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 22-like [Cicer arietinum] gi|502107487|ref|XP_004493279.1| chr1 47726338 47730179 +
2 domain predictions
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Lj2g3v1803100.1
n.a. PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Cicer arietinum] gi|502161064|ref|XP_004512008.1| chr2 27264272 27269393 -
2 domain predictions
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Lj2g3v2089760.1
n.a. Ubiquitin carrier protein [Medicago truncatula] gi|357474045|ref|XP_003607307.1| chr2 31669794 31670709 +
2 domain predictions
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Lj2g3v2447150.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max] gi|356532139|ref|XP_003534631.1| chr2 34554624 34559689 -
2 domain predictions
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Lj3g3v0428400.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr3 3907415 3911934 +
2 domain predictions
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Lj3g3v0428400.2
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 35-like [Solanum lycopersicum] gi|460397424|ref|XP_004244267.1| chr3 3907415 3912998 +
2 domain predictions
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Lj3g3v1061310.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr3 14167069 14172311 -
2 domain predictions
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Lj3g3v1953280.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like [Fragaria vesca subsp]. vesca] gi|470117130|ref|XP_004294717.1| chr3 25054053 25056060 -
2 domain predictions
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Lj3g3v3453420.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max] gi|356544896|ref|XP_003540883.1| chr3 42219024 42221040 -
2 domain predictions
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Lj3g3v3579350.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like isoform X2 [Cicer arietinum] gi|502144341|ref|XP_004505662.1| chr3 43466527 43468277 +
2 domain predictions
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Lj4g3v0109540.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum] gi|502118485|ref|XP_004496290.1| chr4 1001889 1004156 -
2 domain predictions
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Lj4g3v0109540.2
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum] gi|502118485|ref|XP_004496290.1| chr4 1001889 1004156 -
2 domain predictions
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Lj4g3v0548810.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr4 8940631 8945781 +
2 domain predictions
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Lj4g3v1535160.1
n.a. Ubiquitin-conjugating enzyme E2 5 isoform 1 [Theobroma cacao] gi|508773400|gb|EOY20656.1| chr4 23048876 23055800 -
2 domain predictions
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Lj4g3v1615840.1
n.a. Ubiquiting-conjugating enzyme 2 [Theobroma cacao] gi|508718611|gb|EOY10508.1| chr4 23812415 23816889 +
2 domain predictions
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Lj4g3v2973630.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Glycine max] gi|356513371|ref|XP_003525387.1| chr4 39323121 39325834 -
2 domain predictions
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Lj5g3v1827360.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum] gi|502118485|ref|XP_004496290.1| chr5 26203711 26206754 -
2 domain predictions
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LotjaGi1g1v0105100.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.1 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16234739 16240731 +
2 domain predictions
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LotjaGi1g1v0105100.2
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0D3EAM2|A0A0D3EAM2_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16234944 16238947 +
2 domain predictions
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LotjaGi1g1v0105100.3
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.1 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235121 16239684 +
2 domain predictions
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LotjaGi1g1v0105100.4
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0D3EAM2|A0A0D3EAM2_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16238968 +
2 domain predictions
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LotjaGi1g1v0105100.5
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|M5W1P5|M5W1P5_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16239684 +
2 domain predictions
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LotjaGi1g1v0105100.6
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|A0A0B2QXH0|A0A0B2QXH0_GLYSO Ubiquitin-conjugating enzyme E2-17 kDa; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16239684 +
2 domain predictions
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LotjaGi1g1v0105100.7
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|M5W1P5|M5W1P5_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235830 16239684 +
2 domain predictions
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LotjaGi1g1v0215800.1
n.a. Ubiquitin conjugating enzyme E2; TAIR: AT2G02760.1 ubiquiting-conjugating enzyme 2; Swiss-Prot: sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2 2; TrEMBL-Plants: tr|D7TND2|D7TND2_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0215800 LjG1.1_chr1 47563514 47570464 +
2 domain predictions
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LotjaGi1g1v0215800.2
n.a. Ubiquitin conjugating enzyme E2; TAIR: AT1G14400.1 ubiquitin carrier protein 1; Swiss-Prot: sp|P25865|UBC1_ARATH Ubiquitin-conjugating enzyme E2 1; TrEMBL-Plants: tr|A0A1J7FPK6|A0A1J7FPK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0215800 LjG1.1_chr1 47564053 47565503 +
2 domain predictions
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LotjaGi1g1v0215800.3
n.a. Ubiquitin conjugating enzyme E2; TAIR: AT2G02760.1 ubiquiting-conjugating enzyme 2; Swiss-Prot: sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2 2; TrEMBL-Plants: tr|D7TND2|D7TND2_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0215800 LjG1.1_chr1 47564053 47569683 +
2 domain predictions
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LotjaGi1g1v0276600.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT4G27960.1 ubiquitin conjugating enzyme 9; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078FMX9|A0A078FMX9_BRANA BnaA08g13930D protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67754217 67758255 -
2 domain predictions
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LotjaGi1g1v0276600.2
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67756624 -
2 domain predictions
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LotjaGi1g1v0276600.3
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67756716 -
2 domain predictions
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LotjaGi1g1v0276600.4
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
2 domain predictions
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LotjaGi1g1v0276600.5
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|F4I5B8|F4I5B8_ARATH Ubiquitin-conjugating enzyme E2 28; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
2 domain predictions
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LotjaGi1g1v0276600.6
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
2 domain predictions
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LotjaGi1g1v0276600.7
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT4G27960.1 ubiquitin conjugating enzyme 9; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078FMX9|A0A078FMX9_BRANA BnaA08g13930D protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
2 domain predictions
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LotjaGi1g1v0276600.8
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G53300.1 ubiquitin-conjugating enzyme 10; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|W9RDV8|W9RDV8_9ROSA Ubiquitin-conjugating enzyme E2 10; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
2 domain predictions
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LotjaGi1g1v0276600.9
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT4G27960.1 ubiquitin conjugating enzyme 9; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078FMX9|A0A078FMX9_BRANA BnaA08g13930D protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757855 -
2 domain predictions
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LotjaGi1g1v0335000.1
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 LjG1.1_chr1 79406361 79410057 -
2 domain predictions
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LotjaGi1g1v0335000.2
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 LjG1.1_chr1 79406484 79410144 -
2 domain predictions
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LotjaGi1g1v0401300.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G25760.1 peroxin4; Swiss-Prot: sp|Q8LGF7|PEX4_ARATH Protein PEROXIN-4; TrEMBL-Plants: tr|I3SC14|I3SC14_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0401300 LjG1.1_chr1 88934033 88939387 +
2 domain predictions
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LotjaGi1g1v0458700.1
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96212820 96216930 -
2 domain predictions
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LotjaGi1g1v0458700.10
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078DJ43|A0A078DJ43_BRANA BnaA01g16780D protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96214796 96216442 -
2 domain predictions
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LotjaGi1g1v0458700.11
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078DJ43|A0A078DJ43_BRANA BnaA01g16780D protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96214936 96216442 -
2 domain predictions
 –