Domain Predictions — View

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MF_00009

Source: Hamap

Description

Endoribonuclease YbeY [ybeY].

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004222 View details of GO:0004222 AmiGO InterPro QuickGO	Molecular function	Metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.	Subterm of GO:0004175 GO:0008237
GO:0006364 View details of GO:0006364 AmiGO InterPro QuickGO	Biological process	RRNA processing	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.	Subterm of GO:0016072 GO:0034470 Part of GO:0042254

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0295639.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Haloacid dehalogenase-like hydrolase family protein isoform 2 [Theobroma cacao] gi\|508782554\|gb\|EOY29810.1\|	Domains G3DSA:3.30.1240.10 G3DSA:3.40.390.30 G3DSA:3.40.50.1000 IPR000150 IPR002036 IPR006379 IPR020549 IPR023091 IPR023214 MF_00009 PF02130 PF08282 PS01228 PS01229 PS01306 PTHR10000 PTHR10000:SF8 SFLDG01144 SSF55486 SSF56784 TIGR00043 TIGR00099 TIGR01484 cd01427	24
LotjaGi1g1v0222600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp\|Q5XD45\|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr\|I1M9Z5\|I1M9Z5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0222600	Domains G3DSA:3.30.1240.10 G3DSA:3.40.390.30 G3DSA:3.40.50.1000 IPR000150 IPR002036 IPR006379 IPR020549 IPR023091 IPR023214 IPR036412 MF_00009 PF02130 PF08282 PS01228 PS01229 PS01306 PTHR46986 PTHR46986:SF1 SFLDG01140 SFLDS00003 SSF55486 SSF56784 TIGR00043 TIGR00099 TIGR01484 cd07516	26
LotjaGi1g1v0222600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp\|Q5XD45\|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr\|A0A0B2SRP5\|A0A0B2SRP5_GLYSO Putative rRNA maturation factor; Found in the gene: LotjaGi1g1v0222600	Domains G3DSA:3.30.1240.10 G3DSA:3.40.390.30 G3DSA:3.40.50.1000 IPR000150 IPR002036 IPR006379 IPR020549 IPR023091 IPR023214 IPR036412 MF_00009 PF02130 PF08282 PS01228 PS01229 PS01306 PTHR46986 PTHR46986:SF1 SFLDG01140 SFLDS00003 SSF55486 SSF56784 TIGR00043 TIGR00099 TIGR01484 cd07516	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd07516	CDD	1	33.33