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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0321900 |
| Transcript ID | LotjaGi6g1v0321900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0321900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63812078..63815775) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGTCAAAAAGGGAAAGGGAAACTGGTAACAGAAAAGAGGAGGAAGAAGGGCTTCATTCTGACCTGAGAAGGCAAAG AGTGGATAAGGAGGAGGAGGACTCTTCCCCCATTGCAAACCCTCTTTCTGGGTTGGCCAATAATTATGCTGACATTGATG AGGAAGAGGAAAAGGATGCTAATATTCAGAGGAAGAATGATGGGTCCCAGCATAATGGGCATAAATACCAAGAGGAGGAT GATAGTGATGAAGAAGAAGATGAACAATTTGGTGGAAGAAACAGTCGTCATGTCGAGGTTCGAAAGGACTGTCCTTATCT CGATACCGTTAATAGACAGGTATTTATTTTACTTATCTGGTCTATTGTACATGATGATTTTACTGGTTTGCGGATGTATT TGAATTTAATTATGTTATGTGCTAATGTGCAGGTTTTGGATTTTGACTTTGAGAAGTTTTGTTCTGTCTCTCTGTCAAAC TTGAATGTGTACGCATGTTTGGTTTGTGGAAAGTATTTCCAAGGGAGAGGGAGGAAGTCTCATGCTTATACGCATAGCCT AGAAGCAGGACACCATGTGTATATCAATCTTCGGACTGAAAAAGTCTACTGTCTTCCCGATGGTTATGAAATTAATGATC CTTCATTAGATGACATCCGACATGTCCTAAATCCAAGGTTGGTCTCATTTTTTACTTGGTATGCTTGCTGCAGAAACTTC TGTAGGCACATATTTCCATGTTCATTGGCTGGTTAGAGAGTTTTATCCATTTGGAAAAAATTATCCACTCTAGAAATTCA TAATTCAAGCTATGGACCTTCCACAAGTTCACCGAGGATTGTGGTTGAAGTGGTCACTTGCCTGCACAAAGTTTGCGAGG TTCTTAGGGTTGAGCCTTGGCTTGGATGTGCTGTGGATAGGCATGGGACCAGATCTCGGGTGATGCTATATGTATCCCCC ATCCACTCTATGGCAGGGCCAATGCTGACTTGGAAATTTAGACAGAACCCTGGACCATCCCTTGGTCTGGTAGGCAGGGG TTCAGCCCGGCTGTTCAGGCCAACCTTTGAATCCCATACTTTAAAAAAAATCACGAGGAATAGTTATTTTATAGTACGTT TTTTTTAGGCTGTTGATGTTAGGTTTTTTCTTCATAAATGCCTATTAAGATTAGGGCATTTGTTTCCTTAGGTGCTGGGT TTGGGCATTGCATTACACGCATTCAGATTTATTGCTCAATGAATTCAGTTCCCTGGTTAGCTTTGTTATGCACTTGTCTT CTTTGTTCTGCCTGTGGATGTGCCAAACTTCTTGTGATGTGCTTGTTATTTGGTGCTCATGGGTCACTTGCCTTCACCTT AAAACATTGAATTTCTTCTTGAATTCAGAATTACATTGACATCTTTATGGCCCTACGAGTAGAGTTGTTTTTTACCGAAA TCATTTAACATTCCATGCTCACTTTACCCTGTCATTAGCTTTTTCTACAGACCGACTTATATAATATATGTAACTGCATT AATATGGTTCTCTATCTGCAGGCTTACTGCAAAAGAAGTCGAACAGCTTGACAAAAATAAGCAGTGGTCTAGGGCACTTG ATGGTTCTAGTTACCTACCTGGAATGGTATATTTCTTCTTACTTATAAAGATTGGAATTTTACTTTTTTGTTGATTGGTA GTAGATGTTTTATGGCTTATATCAGTTATATGTATCCATTATATGATAAATTTTCAGGTAGGGCTGAATAATATCAAGGA GACTGATTTTGTGAATGTAACAATTCAGTCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTCCTTATCCCTGAAAACT ATCAACACTGCAAATCTCCTCTTGTTCAACGATTTGGTGAACTCACTAGGAAGATCTGGCATGCACGGAACTTTAAAGGA CAGGTTTGTTCCTTAAATATTCATTGTAAATCTATTATTTGTATAGTTTGATGGCTTATCTTTCAGATGTGTGTCAACAG GTCAGCCCACACGAGTTTCTACAAGCAGTGATGAAAGCCAGTAAAAAAAGGTTTCGGATAGGTGCGCAATCTGACCCAGT GGAGTTCATGTCATGGCTTCTTAACACTCTTCATGCAGATCTTAAAACTTCAAAGAAGAATATGAGCATAATTTATGAGT GTTTTCAGGTTCTTTCTTATCCACTGTAATTTTGTATTCCTTTTCTTTTTGATGTATTGTTCTGGTTGATATAAGCACTG AGTAATGTTTGCTGTTAATTTCACTGCGCGCTTGCAGGGTGAACTTGAGGTTGTAAAAGAGATTCCTAACAGAATGATTA TTGATAAGAAAGAAGACGGTGAGGATCAAAACAACGTTGAGAAACTTTCTGATGGAGGAACTCAGAGAAATGCGTTCCTC AAAGAAACTTCAAAAATGCCATTTCTAATGTTAGGGCTGGACTTGCCACCACCTCCGCTTTTCAAGGATGTGATGGAGAA AAATATAATACCCCAGGTGCCACTTCCTGGATTATTACTTTACTTTGTTACATATGAAAGCTGCAGTCTATAATCTACAT ATAAATGTCGAGAAGGATGTTATAATTGTGACACCAAAACTGCTAACTTATTGTCACTTCTATACAATTATTTATAAACA AAACATGTACTTCATGATATTTACCTGGCAGATTGTGCATATGCTGTCATGCATCCCTTGCCCTTTTTTTTCTCTTGGTC TCTTACCCAACTTTTCAAGTCAAGTAGATATTTTGTTTATGATCATGTTGAACTCTAAATGGACTGCATCTTTGCTGCTA CTTAATTATCTCACCTATAAAAACGTATTTTTTATTTAGTAGAGTTGAATGATAGATCTAAGCATCAAAGATGAGTAAAA GCTTGGAAATAAATGGTATAATTCCCATTGATGCAAACATAAGTCATTCATTTTGCAATTCTATAATCTATAGATGAACT TTCTATTTATTTTTTCCGTTTCCATGGACTGAATTGAGTTTCAATTTCAGTTTTGAAGTTTTATCTGTCTCTGTCCTCTT GCCTGCTGACAAGGTCTTGTTTCTAGGTTCCACTCTTTAACATACTAAAGAAGTTTGACGGTGAGACTGTCACAGAAGTG GTCCGTCCTCATATTGCAAGGATGCAGTATCGTGTTACCAGATTGCCTAAGTATATGATTATTCACATGCGACGATTTAC GAAGAATAATTTTTTCGTGGAAAAGAATCCTACTTTAGGTAAGAATTGATGTTGAAATGAACTGTAAATTATTCAAGTTA AAATCAGCCTGCTTAGTTCAGATTTCATCCTCACCCGTGAATATTTGTTTCAGTCAACTTTCCTGTGAAGAATCTGGAGT TGAAGGATTACATTCCCTTGCCAACACCAAAAGAAAATGAGAAATTGCGATCTAAATATGATTTAATTGCCAATATTGTT CATGATGGCAAACCTGGTGAAGGAGTCTATAGAGTATTTGTGCAACGCAAATCAGAAGAATTATGGTATATACTATTTCT TGATAAGATAAAATATGCATCAATCTGAATGGATATCTAACAATGACAAGGAGTCAAGGACTAACGCCTTGATTACTTTT TCAGGTACGAGATGCAGGATTTACACGTCTCAGAAACACTTCCTCATTTGGTTGCACTTTCAGAAACTTATATGCAGATA TATGAGCAGCAGCAGTGA
CDS sequence (LotjaGi6g1v0321900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCAAAAAGGGAAAGGGAAACTGGTAACAGAAAAGAGGAGGAAGAAGGGCTTCATTCTGACCTGAGAAGGCAAAG AGTGGATAAGGAGGAGGAGGACTCTTCCCCCATTGCAAACCCTCTTTCTGGGTTGGCCAATAATTATGCTGACATTGATG AGGAAGAGGAAAAGGATGCTAATATTCAGAGGAAGAATGATGGGTCCCAGCATAATGGGCATAAATACCAAGAGGAGGAT GATAGTGATGAAGAAGAAGATGAACAATTTGGTGGAAGAAACAGTCGTCATGTCGAGGTTCGAAAGGACTGTCCTTATCT CGATACCGTTAATAGACAGGTTTTGGATTTTGACTTTGAGAAGTTTTGTTCTGTCTCTCTGTCAAACTTGAATGTGTACG CATGTTTGGTTTGTGGAAAGTATTTCCAAGGGAGAGGGAGGAAGTCTCATGCTTATACGCATAGCCTAGAAGCAGGACAC CATGTGTATATCAATCTTCGGACTGAAAAAGTCTACTGTCTTCCCGATGGTTATGAAATTAATGATCCTTCATTAGATGA CATCCGACATGTCCTAAATCCAAGGCTTACTGCAAAAGAAGTCGAACAGCTTGACAAAAATAAGCAGTGGTCTAGGGCAC TTGATGGTTCTAGTTACCTACCTGGAATGGTAGGGCTGAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAG TCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTCCTTATCCCTGAAAACTATCAACACTGCAAATCTCCTCTTGTTCA ACGATTTGGTGAACTCACTAGGAAGATCTGGCATGCACGGAACTTTAAAGGACAGGTCAGCCCACACGAGTTTCTACAAG CAGTGATGAAAGCCAGTAAAAAAAGGTTTCGGATAGGTGCGCAATCTGACCCAGTGGAGTTCATGTCATGGCTTCTTAAC ACTCTTCATGCAGATCTTAAAACTTCAAAGAAGAATATGAGCATAATTTATGAGTGTTTTCAGGGTGAACTTGAGGTTGT AAAAGAGATTCCTAACAGAAATGCGTTCCTCAAAGAAACTTCAAAAATGCCATTTCTAATGTTAGGGCTGGACTTGCCAC CACCTCCGCTTTTCAAGGATGTGATGGAGAAAAATATAATACCCCAGGTTCCACTCTTTAACATACTAAAGAAGTTTGAC GGTGAGACTGTCACAGAAGTGGTCCGTCCTCATATTGCAAGGATGCAGTATCGTGTTACCAGATTGCCTAAGTATATGAT TATTCACATGCGACGATTTACGAAGAATAATTTTTTCGTGGAAAAGAATCCTACTTTAGTCAACTTTCCTGTGAAGAATC TGGAGTTGAAGGATTACATTCCCTTGCCAACACCAAAAGAAAATGAGAAATTGCGATCTAAATATGATTTAATTGCCAAT ATTGTTCATGATGGCAAACCTGGTGAAGGAGTCTATAGAGTATTTGTGCAACGCAAATCAGAAGAATTATGGTACGAGAT GCAGGATTTACACGTCTCAGAAACACTTCCTCATTTGGTTGCACTTTCAGAAACTTATATGCAGATATATGAGCAGCAGC AGTGA
Protein sequence (LotjaGi6g1v0321900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSKRERETGNRKEEEEGLHSDLRRQRVDKEEEDSSPIANPLSGLANNYADIDEEEEKDANIQRKNDGSQHNGHKYQEED DSDEEEDEQFGGRNSRHVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYFQGRGRKSHAYTHSLEAGH HVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRLTAKEVEQLDKNKQWSRALDGSSYLPGMVGLNNIKETDFVNVTIQ SLMRVTPLRNFFLIPENYQHCKSPLVQRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGAQSDPVEFMSWLLN TLHADLKTSKKNMSIIYECFQGELEVVKEIPNRNAFLKETSKMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD GETVTEVVRPHIARMQYRVTRLPKYMIIHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIAN IVHDGKPGEGVYRVFVQRKSEELWYEMQDLHVSETLPHLVALSETYMQIYEQQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 94 | 94 | - | – | |
| MobiDBLite | 1 | 36 | 36 | - | – | |
| Coils | 13 | 33 | 21 | - | – | |
| MobiDBLite | 57 | 78 | 22 | - | – | |
| PANTHER | 59 | 532 | 474 | 3.0E-228 | – | |
| PANTHER | 59 | 532 | 474 | 3.0E-228 | ||
| SUPERFAMILY | 102 | 196 | 95 | 2.0E-24 | – | |
| Gene3D | 104 | 192 | 89 | 1.7E-40 | ||
| CDD | 105 | 531 | 427 | 0.0 | ||
| ProSiteProfiles | 121 | 182 | 62 | 18.266 | ||
| SMART | 122 | 171 | 50 | 3.9E-18 | ||
| Pfam | 123 | 184 | 62 | 1.8E-14 | ||
| Gene3D | 193 | 534 | 342 | 5.8E-89 | – | |
| SUPERFAMILY | 216 | 532 | 317 | 2.35E-62 | ||
| ProSiteProfiles | 224 | 533 | 310 | 33.723 | ||
| Pfam | 224 | 530 | 307 | 1.7E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal complex assembly | The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi6g1v0321900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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