Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0388200 |
| Transcript ID | LotjaGi2g1v0388200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88446261..88450550) extracted from Lotus japonicus Gifu genome v1.2.
ATCATCAAATTTACAATCAGATACAAGCTGCAGTGTCAGTTGAGCTGACAGCATGGCGTCAAAAAGGGAAAGGGAAACTG GTAATAGAGAAGGGGAGGAAAGGCTTCATTCTGAGTTCAGAAGGCAAAGAGTGGATGATGAGTCTCCTCATCCTGTCTCC ATTGCAAACCCTCTCTCTGGTTTGGCCAATAATTATGCTGACATTGATGAGGAAGACGAAAAGGATGCTAATAGTCAGAG GAAGAATGATGGGTCCCAGCACAATGAGCATAAATATGAAGAGGAGGATGATAGTGATGATGAAGAAGATGATGAGTCAC ATGAACAATTTGGTGGAAGGAACAGTCGTCATGTTGAGGTTCGAAAGGACTGTCCTTATCTCGATACCGTTAATAGACAG GTATTTCACTTCTCTGGTCGATGATTTTACTGGTTTGCGACGTATGTATATGAATTATTTGAATTATGTTGTGTGCAGGT TTTGGATTTTGACTTTGAGAAGTTTTGTTCTGTCTCTCTGTCAAACTTAAATGTGTATGCATGTTTGGTTTGTGGAAAGT ATTTCCAAGGGAGAGGGAGGAAGTCTCATGCATATACACATAGCCTAGAAGCAGGACACCATGTGTATATCAATCTTCGG ACTGAAAAGGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGACATGTCCTAAACCC AAGGTTGGTTTACTTTTTTTTTTTATTTGGTATGCTTGCTGCAGAAACTTCTGTAGGCACATATTTCCATGTTGGCTATT GGCTGCTGACTATTTAAGAGGATTGTGGTTGAAGTGGTCACTTGCCTACACAAAGCTTGCGAGGCTCTCAGGGTTGAGCC TTGGCTTGGACACGCTGTCGATAGGCATGAGACCAGACCTTTGGTGGTGTTATGTGTATCCCCGTCCACTCTATGGCAGG GCCGGTGCTGAGTTCTAAACTTAGACAGAACCCTGGACCATCCCTTGGTCTGGTAAGCAGGAGTTCATCCCCTGCTGTTC AGGGCAACATTTGAATCCCATTTTACTAAAAAAAATCACGAGGAATAGTTATTTTATGCCTTGTTTATTAGGTTGTTGAT GTTAAGTTTTTTCTTCATATATGCCTATAAGATAAGGGCATTTGTTTCCTTAGGTGCTGGGTTTGGGCATTGCATTACAC GCATTTACGATTTATTGCTCAATGAATTCAGTTCCCTGGTTAGCTTTGTTATGCACTTGTTTTCTTTGTTCTGCCTGTGG ATGTGCCAAACTTCTTGTAATGTGCTTGTTATTTGGTGCTCACGGGTCACTTGCCTTCACCTTAAAAGATCGAATTTCTT CTTTAATTCAGAATTACATTGACATCTTTATGGCCCTATGAGTAAAGTTGTTTTTTACCGAAATCATTTAACATTTCATG CTCACTTTACCCTGTCATTAGCTTTTTCTACAGACCAAGTTATAGAATATATGTAACTGCGTTAATATGGTTCTCTATCT GCAGGCTTACTGCAAAAGAAGTCGAACAGCTTGACAAAAATAAGCAGTGGTCTAGGGCACTTGATGGTTCTAGTTACCTA CCAGGAATGGTATATTTCTTCTTACTTATAAAGATTGGAATTTTGCTTTTTTGTTGATTGGTAGTTAGATGTTTTATGGC TTATATTTATCCATTATATGATAAATTTTCAGGTAGGACTGAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATT CAATCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTCCTTATCCCTGAAAACTATCAACACTGCAAATCTCCTCTTGT TCAACGATTTGGTGAACTCACTAGGAAGATCTGGCATGCACGGAACTTTAAAGGACAGGTTTGTTTCTTAAATATTCATC GTAAATCTATTATTTGTAGTTTGGTGGCTTATCTTTCAGATGTGTGTCAACAGGTCAGCCCACACGAATTTCTACAAGCA GTGATGAAAGCCAGTAAAAAACGGTTTCGAATAGGTGCACAATCTGACCCAGTGGAGTTCATGTCATGGCTTCTTAACAC TCTTCATGCAGATCTTAAAACTTCAAAGAAGAATATGAGCATAATTTATGAGTGTTTTCAGGTTCTTTCTTATCCACTCT AGTTTTTATTCCTTTTCTTTTGATGTATTGTTCTGGTTGATACTAAGCACTGAGTAATGTTTGCTGTTAATTTTACTGCA CGCTTGCAGGGTGAACTTGAGGTTGTAAAAGAGATTCCTAACAAAATGATTATTGATAAGAAAGCAGACGGTGAGGATCA AAACAACGTTGAGAAACTTTCAGATGGAGGAACTCAGAGAAATGTATTCCTCAAAGAAACTTCAAAAATGCCATTTCTAA TGTTAGGGTTGGACTTGCCACCACCTCCGCTTTTCAAGGATGTGATGGAGAAAAATATAATACCCCAGGTGCCACTTTCT GGATTATTACTTTGCTTTGGTACATATGAAAGCTTCAGTCTATAATCTACATATAAATGTCTAGAAGGATGTCATAATTG TGACACCAAAACTACTAACTTATTGTCACTTCGAAACAATTATTTATAAACAAAACATGTACTTCATAATATTTACCTGG CAGTTTGTGCATATGCTGTCATGCATCCCTTGCCTTTTTTTATGTTCTCTTGGTCTCTTACCCAACTTTTCAAGTCAAGT ATATATTTTGTTTATGACTATGTTGAGCTCTAAACGGACTGCATCTTGGCTGCTACTTAATTATCTCACGTATAAAAGCG TATTTATTATTTAATATAGTATTTTATTTATTTATTAGAGTTGAATGACAGATTGTTATGTTCCCTCGCGTAGGATCTGG TCACGGGTCTAGACATAGGATACTTCTTGCGTCCCAGACTGGAGAAAGAAGAAGCGGCTCGTCCTTGACAGAGCCTCTTC AAACCTTCGGGTTTCTTAGAAAAATATTTTTTATTGATAATGTTCATTCAGCAATCCCCTTATTTTATAAGGATTGAAAT ACAAGGTAACAAAAAAATAAATAAAAAAATACAAGAAAAATAGGAAACTGATCCTATATAATTAAGAAACAAAATCCCTA AGATCTTATCTTATAAGATAAGAAACAATAAAATCCTAACTTATTCAGAAAGATAATTAAACCTTATCTAATAAGGAAAT AATAATAAGTTAGGATTTTATTATTTCCTGTCTTATAAGATAAAATCTTAGGGATTTTGTTTCTTAATTATATAGGATCT AGTTTCTTATTTTTCTTGTATTTCAATCCTTATTAAATAAGGGAATTGCTGAATGAACGTTATCAATAAAGAATATTTTT TTAAGAAACCCAAAGGTTTGAAGAGGCTCTGCCGCTTCTTCTTTCTCCAGTCTGGGACGCAAGAAGTACCCTGTGTCTAG ACCCGTGACCTGATCCTACGCGAGGGAACATAACACAGATCTAAGCATCAAAGACGAGTAAAAGCTTGAAAATAAATGGT AGGATTCCCATTGATGCAAACATAATTAGTTCATTTTCCAATTCTATAATCTATAGATGAACTTTTTTTTTAAGTTTTCA CGGACTGAATTGAGTTTCAATTTCAATTTGGAAGTTTTATCTGTCTCTTGCCTGCTGACAAGGTCTTGTTTCTAGGTTCC TCTCTTTAACATACTAAAGAAGTTTGACGGGGAGACTGTCACAGAAGTGGTCCGTCCTCATATTGCAAGGATGCAGTATC GTGTTACCAGATTGCCTAAGTATATGATTATTCACATGCGACGATTTACTAAGAATAATTTTTTTGTGGAAAAGAATCCT ACTTTAGGTGATGTTGAAATGAACTGTAAATTATTCAAGTTAATATCAGCCTGCTTAGTTCAGATTTCATCCTCACGGTG AATATTTGTTTCAGTCAACTTTCCTGTGAAGAACCTGGAGTTGAAGGATTACATTCCCTTGCCAACACCAAAAGAAAATG AGAAATTGCGATCAAAATATGATTTAATTGCCAATATCGTTCATGATGGCAAACCTGGTGAAGGATTATATAGAGTATTT GTGCAACGCAAATCAGAAGAACTATGGTATATTCTAGTTCTTGATAAGATAAAATATTCATCAATCTGAATGGATATCTA ACAATGACAAGGACTAACGCCTTATTATTTTTTCAGGTACGAGATGCAGGATTTACACGTCTCAGAAACACTTCCTCATT TGGTTGCACTTTCAGAAACTTATATGCAGATATATGAGCAGCAACAGTGA
CDS sequence (LotjaGi2g1v0388200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAAAAAGGGAAAGGGAAACTGGTAATAGAGAAGGGGAGGAAAGGCTTCATTCTGAGTTCAGAAGGCAAAGAGT GGATGATGAGTCTCCTCATCCTGTCTCCATTGCAAACCCTCTCTCTGGTTTGGCCAATAATTATGCTGACATTGATGAGG AAGACGAAAAGGATGCTAATAGTCAGAGGAAGAATGATGGGTCCCAGCACAATGAGCATAAATATGAAGAGGAGGATGAT AGTGATGATGAAGAAGATGATGAGTCACATGAACAATTTGGTGGAAGGAACAGTCGTCATGTTGAGGTTCGAAAGGACTG TCCTTATCTCGATACCGTTAATAGACAGGTTTTGGATTTTGACTTTGAGAAGTTTTGTTCTGTCTCTCTGTCAAACTTAA ATGTGTATGCATGTTTGGTTTGTGGAAAGTATTTCCAAGGGAGAGGGAGGAAGTCTCATGCATATACACATAGCCTAGAA GCAGGACACCATGTGTATATCAATCTTCGGACTGAAAAGGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTC ATTAGATGACATTCGACATGTCCTAAACCCAAGGCTTACTGCAAAAGAAGTCGAACAGCTTGACAAAAATAAGCAGTGGT CTAGGGCACTTGATGGTTCTAGTTACCTACCAGGAATGGTAGGACTGAATAATATCAAGGAGACTGATTTTGTGAATGTA ACAATTCAATCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTCCTTATCCCTGAAAACTATCAACACTGCAAATCTCC TCTTGTTCAACGATTTGGTGAACTCACTAGGAAGATCTGGCATGCACGGAACTTTAAAGGACAGGTCAGCCCACACGAAT TTCTACAAGCAGTGATGAAAGCCAGTAAAAAACGGTTTCGAATAGGTGCACAATCTGACCCAGTGGAGTTCATGTCATGG CTTCTTAACACTCTTCATGCAGATCTTAAAACTTCAAAGAAGAATATGAGCATAATTTATGAGTGTTTTCAGGGTGAACT TGAGGTTGTAAAAGAGATTCCTAACAAAATGATTATTGATAAGAAAGCAGACGGTGAGGATCAAAACAACGTTGAGAAAC TTTCAGATGGAGGAACTCAGAGAAATGTATTCCTCAAAGAAACTTCAAAAATGCCATTTCTAATGTTAGGGTTGGACTTG CCACCACCTCCGCTTTTCAAGGATGTGATGGAGAAAAATATAATACCCCAGGTGGTCCGTCCTCATATTGCAAGGATGCA GTATCGTGTTACCAGATTGCCTAAGTATATGATTATTCACATGCGACGATTTACTAAGAATAATTTTTTTGTGGAAAAGA ATCCTACTTTAGTCAACTTTCCTGTGAAGAACCTGGAGTTGAAGGATTACATTCCCTTGCCAACACCAAAAGAAAATGAG AAATTGCGATCAAAATATGATTTAATTGCCAATATCGTTCATGATGGCAAACCTGGTGAAGGATTATATAGAGTATTTGT GCAACGCAAATCAGAAGAACTATGGTACGAGATGCAGGATTTACACGTCTCAGAAACACTTCCTCATTTGGTTGCACTTT CAGAAACTTATATGCAGATATATGAGCAGCAACAGTGA
Protein sequence (LotjaGi2g1v0388200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKRERETGNREGEERLHSEFRRQRVDDESPHPVSIANPLSGLANNYADIDEEDEKDANSQRKNDGSQHNEHKYEEEDD SDDEEDDESHEQFGGRNSRHVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYFQGRGRKSHAYTHSLE AGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRLTAKEVEQLDKNKQWSRALDGSSYLPGMVGLNNIKETDFVNV TIQSLMRVTPLRNFFLIPENYQHCKSPLVQRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGAQSDPVEFMSW LLNTLHADLKTSKKNMSIIYECFQGELEVVKEIPNKMIIDKKADGEDQNNVEKLSDGGTQRNVFLKETSKMPFLMLGLDL PPPPLFKDVMEKNIIPQVVRPHIARMQYRVTRLPKYMIIHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENE KLRSKYDLIANIVHDGKPGEGLYRVFVQRKSEELWYEMQDLHVSETLPHLVALSETYMQIYEQQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 97 | 97 | - | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 56 | 76 | 21 | - | – | |
| PANTHER | 63 | 543 | 481 | 1.2E-215 | ||
| PANTHER | 63 | 543 | 481 | 1.2E-215 | – | |
| SUPERFAMILY | 105 | 199 | 95 | 2.12E-24 | – | |
| Gene3D | 107 | 195 | 89 | 1.7E-40 | ||
| CDD | 108 | 542 | 435 | 0.0 | ||
| ProSiteProfiles | 124 | 185 | 62 | 18.266 | ||
| SMART | 125 | 174 | 50 | 3.9E-18 | ||
| Pfam | 126 | 187 | 62 | 1.8E-14 | ||
| Gene3D | 196 | 545 | 350 | 1.6E-82 | – | |
| SUPERFAMILY | 219 | 543 | 325 | 4.12E-56 | ||
| ProSiteProfiles | 227 | 544 | 318 | 32.65 | ||
| Pfam | 227 | 541 | 315 | 2.0E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal complex assembly | The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi2g1v0388200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…