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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0669500 |
| Transcript ID | LotjaGi1g1v0669500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RecA; TAIR: AT3G10140.1 RECA homolog 3; Swiss-Prot: sp|Q8RY99|RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial; TrEMBL-Plants: tr|G7KSL4|G7KSL4_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi1g1v0669500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123226970..123233711) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTCTTCCACTTCTCAAACTCTTTCCCCCATTTTCATCTCCATAGCGAACAAAGCCTAACTCAGTTCACCCGTGTAA GCAGCCTGTTCCCCTGTTGGCCGAGGTTGCTGTCGCTACTCGCTACCTCACTTCACTTCAACTTCTGAGGCCAAAGCCAA AGCCAAAAACCACTTCCATTGTTGTCTTCGATGCTTCTCTTTTCTACTTCAGTTTTGGGTTCTCTCAAATCATGCACATG ACTGTGAAGTGAAGTGGGTGTGTGCCAAAGAACAAGGAAAGACTACCCCTTCTATCAAAATGCGATTTTTAAGGCCTTTT CTCTCATCCTCTCTTCTCTGCCACTCGCATCAGGTCTCTCTCTCTACTCTTTTCATTGTTCTTATTTGAAGTTTTATTTT TTTACTTTAACATGTGTGTATAAAATTAGAAGATTAAGTTGAACTGTAATTATGCACCCCACAGAGCAAATTTGTGGGTT TAATTTGATAGTTGAATGGAAATGAGATGAGATCCTCTAATGTTTGTTAATTGTAGCTTGTAAGCAAGGCATTGTTTTTC ATTCAAGTGTGATGTGAATTTTTGATTTGGGTTTAGGTGTCCTTTCAAAAAGTTAGTAATGGGTTTCTTTAATGAAGCAA GACTTACTGTTATTGAGCAAGTATGCATGAAGGTCCACATTGTGATTAGTTGACTATAGCATGATGGTCAATGTGTATTC TGTTTCTGTAGCACTACCACCATGAGTAAGATGTTTTGGTATTTGCTCAGTTTTATTGATCCCATGGAGCAAAGTTCTCT AATTTGTTTGTGTATCTGATAAGGTAACCAAGCATCTTAGAAAAGATCAGGTGTTTACATCAAATAGAAGCCAATTACCT AATCTTATCTCAATTCACCTGTTGAGCCTATGAAACTCCTGACAAATATGAGTGCTAGAATCCAACCGAATGCACTAAGT AGTAGCATAGATTGTACATTGCCATAAAAGTTTGGCTCTCTATCAAAAGCAAGGTCCAAGGCCCTAGGGCAAACCTAGTC TTCACCAAAAGAACCAGGCTATGTATTCGAGAAAGTGGAAGTGGCTGAACAATTTAACAGCAAAGAGGATGAATTTTAAT CAACCACTACCCTCAACACACATTGGGGGAATTGTTATTACGATGGCACCTAAATTTTGCAGTTTTGTATAGATATGCAT TTGGTTTCTGTTCCACAAACAACATATATGAGCAAGTCTTTTTATTTTCATTTCTGTCTCTTTGTACCATCTTACGTTTC CATTTGCTCCTAAATGAGTATTTTATAAATAATTTTCATCTCCGTGTATTATAAATTGTGTTTTTGTTTACCAGAACAGA ATTGGAGAAATTGTGACCAGGATTCGTCTGAACGCCCGCTTGCTTTCTTCTGCAGGTATTAGTTGCCTTGTCTGCTAAAG TACATGTGTATGTGTGTCTATTTGGCCTGAACGCTTACTTTCTTTCTTCTGTTGGCACCATTCTCTTTCTTTTTTCTATA TGCATCTGTGTAGGTGACTAGGTGTACATGATGCCTATATGAATGTATCTGTCTTTCTTCCTTGATGTTTGAAAACATTA TGTGCTTATATTTTCAAAATAATCATAAGCGATATTTTATTAACATTAGAATCATTTTCTAGTTTCAGCTGAAGCTTCAG ATTTAGAATGTGATGAGCTCTATGATGATGTCAAAGCTGCAGAGAGAAAGAAAACACTTTGCTTGGCTGTCTCACAGCTA GCTAGTGAGTTTAGCAGGGAGTCAATGTTATCTCCGCAGAAGTTTTTTGGTGTACGCCAGGCTCGTGTGGTATCTACAGG CTCATTGAAGCTTGACCTAGCTCTTGGAATTGGAGGATTACCAAAGGTGACAATAGGACTAGTGCATCTAACCCTTATAT GGTTGTTTGGTGTAAGAAACTGTGTTGCACAAAGATTTAGGATATGTATCTTTGTGCTCACAGTGTGCTGGTTGATGACC TCAGTAAAATTGTGTAGCGCATTTATTTGCTTTTTTTCTGATGGTTATGGCCTCTAATGCTCTAGATTTACTAGTTTATG TTGATATGACAGTGAAGCCTTAAAATAATTCTTAGCAAAAGCATTACAGAGAAAGTTGGGTGGCTCTTATTGTGGAAAAG AGGGTAGAGTCTTGCCTTAGGTGGTTTGGGATGTGCGGAGAAGACTCATAGAGGCAGTGAGGCACTAGTGAGGAGAGTGG ATTACGTGAAGGATAGTTTAGTATTCAATGGTAGTGGGAGACCACAGAAAACCATATCCCAAAATTGTATTTAAATAGTC TGTCATTAAGCATGATTTATGAGAGCAAGTTATGGTGGCGTTTGATCTATTTAGCCAACCCCACCTAGTAGAGAAATGCT TTACATATTGTTGTAGGGCCTTAACAGGAAAACAATTCAGGTTAAGTTCAGATACCAATAGGCATGAATATATAAAACCA TTTATGTGTCTTCACCCAATAGCATAAGCTTTTGGGATAGTCGGTTCATTCCATAGTATCAAAGCCTATCCTGGATTGGT TTATTGGGCCACCCATAAACGAGCCACCGCAGATGTCCAGTCCTGCAAACTTCAGGCTTAAGATGTCCAGCTCTGGGCGT GAGGGAGGTATGTTGAGAAGTCTCACATTGACCGGAGATATGGCCAATTAAGTCCTGATAAAGGGTAGAGAAACCCTCAC CCTTAAGATAGCTTTTGGGGTGAAGTTAGACCTAGCCCGAGTTCTAAGAATTTCAAACAAGGGCTATAGCAATCCCAAAT GTTGACAGAACTAGCCTTCCTTGCGGTCCTTTTCTTCATCCTGTTTCCCTTTGCAGATTAATGTCATCACACTGTTAATC TGAAAAGATTAAAGCTCACAATGTCTTCTCTTTGCATTGTTAGTTATGAAGTTATGGTAAACTTATCATCCTTTATATTG TATCCTGGATGGAGGTATTTTCTACTTGAATAGAATGAACATGATTGTAAGCCCTTTGATGCTCTTCATATTTAGGACAG TTGTACAAGTGGGGTTCCTTTTAGTTTTTTCTTCCCCAGCTCTTGTAAGGTTCCCTTCCCCCCCCCCCCCCCCCTCCCCT TCTTTCCTCTTTCCTTTGCATTCTTCTCTTGAAATGCTTTAAGATTCAGAATTTGAATCTTTTGCAGCCAAAAGGAATTT ATCCAGTATTTGAACTAATCAGTTTCTTAACCCAGCAGCAAACCACATGAACTTGACAGTGGTCTCCAGCGATAGCTAAG GTTTTCTAACAGCTTCCGTTCTCTTCCTTTTTGATATACTCTTCGGCTCTCTTCCCCACAGATCATAACCACTAGATAAT GCTCATAAAAATGAAAAATAACCATTGGGTAATATATGTGATTTAAATGCTTTGCCAACTATCAGTAATCTGGTTTTTGG TTAGTCAACTATTTCCAGATGGGTACTTGAAATGATAATTCTTCGTAGCTTAGAATTTTTATATCATATTCACGAATTTC CTTAATATGGTATTACATTTAAACTTGTTAGGGCAGGATTATAGAAATTTATGGACGAGAAGCAGCTGGTAAGACAACAC TTGCACTTCAGATTATTAAGGAAGCTCAAAAGCTTGGAGGTACATATCAGACTTCTGGTATTTAAGTTTTCAAAATGCAC TTCGTGCAGATAAAGAATTTCTGAATTTGTACTTCAATAATATAAAAGTAATTAACTCTATTAATGAAATTTCTGAAACC TGAATGTTTTCAAGTTTCTTATGAGTTGAGTACTGATGTTATTATGGGATTGTAACTAAATCTTAGCCAAGCAAAAATAA TGAACTGCCGGAGCTAGCTATGGGGAAATATGATTTTACTTACACTGTATAGATGCTTAAGAAAGGCACATATCAAAACA TATATACGGAGCTACTTTCACCCTGGTTTATCCTGAGTTTCAATATATTCCATAGCCATTGTTCTGTTCATTACACACAC ACTCAAAGCAACTTATTAAATGCTTGGTTGAACATTTGATTCCTCAAGCATGTAATAAGAATTTCTTTTGCATGGGTATG TTTCCTTTAAATGGTAAATGTACATGTTAAGGGCTCAAATTGCAGAGAAACTCCTCCTGAGCTCTCTTATTGTTTTGTAA ACCACTATATTAGTTTCTTCATAATATTATTCCATGGTTTCTAACAAGTGAAAAGGAACTAGGACAAAAATAATTTGTTT GAATTTTAAACTAATAAAGTAATCTGGAGGTAGGATCTCCAAGAAAGATTTGTTCAAATATGTAAAACAAATTGGACGCA GTTTAAAATATCTCCTTCACTAGGAAGTAGATTGGTTTCTTGGTGATGATGGTTGCTTGTATAATTTGTTGAATTTGTTC TTCATAACAATACCAGTTTGTGAACATGCCTGGAATGCATTAAGCTGTTTGTGTCTAACGTGTAAAAGTGATTTCTTTTG ACTTAGTTTTGTCAGAAAAAAAAAAGAATGAAATTTGTGAATCTACTCGTCAGTTTACACATGCAAGATGCTTAGTACTA TTGACCTTTTGCCCTGTTTCTGTTGGACAATATGTTGTTTTTCGCATTGTCTCCTGTCAATTAATAACTTCTGTTTATTC TGTTGGCAGGATATTGTGCATATCTTGATGTAGAAAATGCACTGGACCTTTCACTTGTGGAATCAATTGGTGTAAATACC GAAAACCTTCTTGTCCCACATCCTGATTGTGCTGAAAATTTGTTGAGCATGGTCGATACGTTAACAAAAAGTGGAGCTGT AGATGTGATTGTGGTTGATAGTGTAAGTTACTTTGTTTAGTTACAATTAACAAATGATCTGAAATGGATATTGAGTTGAT GTGATCATGTGATACAATATACAAAGCACTGACCTCTACTTATATTAATATTAGATTCTAAAAGTCCTATTTAAATGAGG AAAAAAAATAATGAAATATGATGCAACATGGAAAACACACTCAACTTATCATTTGAGATGCTCTAAAATATTGTTAGATA CAATGATGATGTTATGAGGCATTTCCAAAGGTACTTTAACACATTTCTCTTTAGTTTTACTCTCACATGTAATATAAAAT GATTTTGTCATTGCAGGTCGCTGCCCTTGTCCCCAAATGCGAACTTGATCAATTAGGAGTTAGTACAAGAAAAGATTTAC ATTCGCAAATGATGACTCAAGCCCTACGGAAAATTCATTATTCATTATCCCACTCGCAAACTATTCTCATTTTTGTTAAT CAGGTCAAAGCCATATTACTTGCAGAACTGTCCATCATATCTTTTGAATCTCAATTTGTAATATATACCAAAAGAACCAT GAGATTTACCATTCAATACTGACTTTCGTATACAGATTAGATTTAGTTCAAAAGCATTTAGCGGACGTGGATCTATGGAA GAGGTCACCTGTGGTGGAAACGCTTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGATTGGGATTGATCAAAAC TGAGGATAAGGTGAGGTCTTACGTATTTCTCAAGAATTGCTAGGCCTATGGCTATGCCTAGCCGGTTAACTAATTTATTC TCTTGTTCTTGAGGAAGGCCTCTCAATCGGCCCTGCCACCTTTATTGTGTTACTTTTCAATGCTATTGCTGATCAGTAAC GTGCAAACAGGGACGGAACCAGAAAATTTTAGTAAGAGGGCGAAAATTTAATACATCAAAACATTTGAATGCTCTTCTAT TAAGAAATGTTTTTCTCTTGGCGGATCGATTCCCCCATTTTCTAACACCTAGTTCTGTCCCTGCGTGCAAAGTTGCCCGA TTTCTTCCTCCCTTTCTGAGCACAGCACCAATTATTTTCTTCTTGTTTTAATTATTTTCTCTTGACATCTGGAGCTTCAG GTAGAGGGTACTCAGATCTGTGTGCAAGTGGTAAAGAATAAACTAGCACCGGCGACAATGAAAAAGGCTGAGCTGGGTAT CAAGTTTGGAAGAGGCTTTTGCCATGAATCTGAGGTCTTTGATTTGGCTTGTGACCATGGAATCATTATAAAAGATGAGG GGAGCTACTTGATTGAAGGGGAAACTTTTAGTAGTAGAGAGGCTGCTGAACTATTTTTGGCTAAAAATGAAGGGGTTTGT GATAAGTTAATTATGGACATTAGAAGATTTTATTTTTGAAAACGAGAAGACTTTCAAATATCTTTACAAAAACTTGCCTT TTGTGCTATTGGTAGGCCAAGTCTCTTTAGTAGGCTTTATGTAATTGAGCTTTACAAAAATATTCTGAAGGCATCAGGAT TGCCTTCAATGAGCATCAACCTCTGTAGATGAGCAAGGGGATTTAAGTTGAGGGAATTGTCAACTGCAATAATGTGAGCC CCTTATTTTTAAGATATGGAGTTCTGGAAAATCACTCTGCCAAAAAAGAAATTGATTGTTCATGCAAACCATTTGAAACC TTGTTGTCTATTGGAAATGGTTGTTGTATTCACGTGTCAAAGAAATGTGCTATGGAACTATAATGTAAATTATGAACTGC TTCCATTTCTCATCACCCTTCCCAGATTAAATTGTCAGGGTTTCTGGGTCTATTGGATGAATATCTTTTTCTGCATTGTT GGGCATGTGAATTGTTTTTAGACGACATAAAACTATCAATTTTCTTTTTTTTTTTTGGTCAAAGATGTTTTGAATAAAAG CCCAAGGATTACCAAACGGCAC
CDS sequence (LotjaGi1g1v0669500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGATTTTTAAGGCCTTTTCTCTCATCCTCTCTTCTCTGCCACTCGCATCAGAACAGAATTGGAGAAATTGTGACCAG GATTCGTCTGAACGCCCGCTTGCTTTCTTCTGCAGCTGAAGCTTCAGATTTAGAATGTGATGAGCTCTATGATGATGTCA AAGCTGCAGAGAGAAAGAAAACACTTTGCTTGGCTGTCTCACAGCTAGCTAGTGAGTTTAGCAGGGAGTCAATGTTATCT CCGCAGAAGTTTTTTGGTGTACGCCAGGCTCGTGTGGTATCTACAGGCTCATTGAAGCTTGACCTAGCTCTTGGAATTGG AGGATTACCAAAGGGCAGGATTATAGAAATTTATGGACGAGAAGCAGCTGGTAAGACAACACTTGCACTTCAGATTATTA AGGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCACTGGACCTTTCACTTGTGGAATCAATT GGTGTAAATACCGAAAACCTTCTTGTCCCACATCCTGATTGTGCTGAAAATTTGTTGAGCATGGTCGATACGTTAACAAA AAGTGGAGCTGTAGATGTGATTGTGGTTGATAGTGTCGCTGCCCTTGTCCCCAAATGCGAACTTGATCAATTAGGAGTTA GTACAAGAAAAGATTTACATTCGCAAATGATGACTCAAGCCCTACGGAAAATTCATTATTCATTATCCCACTCGCAAACT ATTCTCATTTTTGTTAATCAGATTAGATTTAGTTCAAAAGCATTTAGCGGACGTGGATCTATGGAAGAGGTCACCTGTGG TGGAAACGCTTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGATTGGGATTGATCAAAACTGAGGATAAGGTAG AGGGTACTCAGATCTGTGTGCAAGTGGTAAAGAATAAACTAGCACCGGCGACAATGAAAAAGGCTGAGCTGGGTATCAAG TTTGGAAGAGGCTTTTGCCATGAATCTGAGGTCTTTGATTTGGCTTGTGACCATGGAATCATTATAAAAGATGAGGGGAG CTACTTGATTGAAGGGGAAACTTTTAGTAGTAGAGAGGCTGCTGAACTATTTTTGGCTAAAAATGAAGGGGTTTGTGATA AGTTAATTATGGACATTAGAAGATTTTATTTTTGA
Protein sequence (LotjaGi1g1v0669500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFLRPFLSSSLLCHSHQNRIGEIVTRIRLNARLLSSAAEASDLECDELYDDVKAAERKKTLCLAVSQLASEFSRESMLS PQKFFGVRQARVVSTGSLKLDLALGIGGLPKGRIIEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDLSLVESI GVNTENLLVPHPDCAENLLSMVDTLTKSGAVDVIVVDSVAALVPKCELDQLGVSTRKDLHSQMMTQALRKIHYSLSHSQT ILIFVNQIRFSSKAFSGRGSMEEVTCGGNALRFYAAVRLRLSRLGLIKTEDKVEGTQICVQVVKNKLAPATMKKAELGIK FGRGFCHESEVFDLACDHGIIIKDEGSYLIEGETFSSREAAELFLAKNEGVCDKLIMDIRRFYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 14 | 8 | - | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 384 | 362 | - | – | |
| PANTHER | 23 | 384 | 362 | 7.3E-180 | – | |
| PANTHER | 23 | 384 | 362 | 7.3E-180 | – | |
| Coils | 39 | 59 | 21 | - | – | |
| Pfam | 61 | 325 | 265 | 2.1E-79 | ||
| SUPERFAMILY | 81 | 312 | 232 | 2.5E-40 | ||
| Gene3D | 88 | 381 | 294 | 4.1E-80 | – | |
| ProSiteProfiles | 89 | 248 | 160 | 29.764 | ||
| SMART | 111 | 285 | 175 | 5.2E-4 | ||
| PRINTS | 147 | 176 | 30 | 4.2E-49 | ||
| PRINTS | 181 | 210 | 30 | 4.2E-49 | ||
| PRINTS | 219 | 248 | 30 | 4.2E-49 | ||
| ProSiteProfiles | 252 | 330 | 79 | 19.142 | ||
| PRINTS | 267 | 295 | 29 | 4.2E-49 | ||
| ProSitePatterns | 270 | 278 | 9 | - | ||
| PRINTS | 301 | 330 | 30 | 4.2E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi1g1v0669500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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