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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0310500 |
| Transcript ID | LotjaGi4g1v0310500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A151SS31|A0A151SS31_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0310500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68671960..68678425) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGGGAAATGAAACACCCTATGAGATCGAAACCCTAATAAACAAAACCAAAACCAAAACCAAAACCCACCAAGTTCAG TGCAGTGCAGTGCAGTGCAGAACTGTGTAGTTCACTCCTCCATGACTGGCATGCATCCACATAAATTCAATTCCATTTTC CTTCACACTTCACTGTATAAATAAGTATTCAGGTGACAACTTTCAAGCTTGGAACGCGCTCTGCTTGCTTCTATGGCGAG GCTGTTTCGGAACACTATCCTTCTCAGTCGCTCCCTGTTCGTCCCTCAGGTGAATACAACACAACACGTGCTTTCTTTAT TTGCAATCTCCTCTTTTATTCAATTAGTTGATTGATTATGTTTATGCACGCACAGTGATCACTTTTGGTTACCAAACATG TCTTCACTGAAATGAAATTGGTACATACTCAACCATTCATTGACATATTTTTTGCCTTCATTTTCAGGGCTTTAAACTAG GAATATGTGGCACTTCACAGGCTTTGAGCTTTTCATCTAAAGGTGGTTTAATGAAACTCTCTTGCTTTATTCCCTTCTCT TTATACCTGAAATTGAAAGATGATATAGTTTGGAGGAGTTAATTTATACTGAATGGTCATTTATGCGAATCAACATGCAA AACGATTATCATATGCTTTTGAAAAATGTGAATTACTAGCTAAAACCCAAGTTTTAAACTGTTGGTTGCATGATTGTTGT GTATTTGAATGCCTGCCACTAAGCCTGGTCACATTTGACTTAGGAGTTTCTGCCGTTTCTTGTCGCAAATTTATCTCGCT TTTCTTTTTTATACTTGTAGTCCTACTATGACTAATGTGAAAAAGGTAGAAACAAATGAGTAATAAGAGATTGGGGAGAA ACATGTGGGGAGTAGCATGAGAGGATGAATCAGCACAGGCAATTGTGTAACCTCATGCCTACGTGGCAGGATGGGAGGGA AATCAGGAAGGGGGTTGGTTATATGGTTAGGAATGAGGAAAGAAATGGAGTAATAGAAGGGGGAAGAGGCAAAAGAGAGA GGGAGGAAAAATGGATGGAGGAACCAGGACTGGTACAGGCCTATTATGTGTGAGAAAATGAAAGAAAATGTTCAGATTGA GTTTACTTTTGCTGGAAATGACTTCATGAATTAAGTATTTTACAATACAGACCAGAGATAAATTTGTAGTTTGAGAATGA GGGGGCTAACTTTTTAACTACTTAACTATCTCCCAGCTTAGCTGATTCAGCAAAAGTTTGGTTATAACAAACTTTAGTCA CTACCACATATGCATAGTTACTCTAGTAAGGACTCTTGAATTGCCTACGGGCTACGGTATTTGTATTTACTTGTTCAGAG ATTTCATACCAGTTTGATTTCTTGCCTACCTCTGCTATTGATTTCAGTAGCAGATTTGTTGTAAATATTGCACTATTTCA AATCATTCTGCTCTAGTTTCCTATGTTCTTTCAGTTTTTATTGGAGTTTGTACCAATTTGAAGTTAACAAGATGTTGACA ACATTTTCATTTCTACATACCTGAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTA AGAAAGACTTGGCCCTTCAACAAGCTCTTGATCAGATTACTTCCGCATTTGGAAAAGGATCTATTATGTGGCTTGGTCGC TCTGTCTCACCAAAAAATGTACCTGTTGTGCCTACTGGTTCTTTTGCTCTAGATTTAGCACTAGGAATTGGTGGCCTTCC AAAGGTATACCTAGATCCCTGCATGAAGAAGTTTCTTGCTCACTTGTCACATGTGGATAAACTAGAACCTTTTTTAATGT ATCTAATGGTTACTACTTACTGGTGATAAAGTTTCTATTTTTCCCACCCTTTTTTGTTTTCCTTTTACATTGAGTTTTGT CTATTTCCTTGCAGTCGATTCTATCTGCTACGATGAAGAAATAGTCTATATCAGTTGTTTATAGTTGTTATCATTGGTTA ATATTCACGACTCATTATTTTGGTTGACAGTTTCTTACAGATAAAAATGTTTCTGGGTAAAGAGTCATTGTTTGGCTTTC ATTTTCCTCATGCATGACACCCACACACCCACACGCATGCACACGTACCGCACACGTACTCATGCTAACTATTATATGTA ATTGTTTGATGTTTGTAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACTACTCTTGCTTTGCATGT GATTGCGGAGGCACAGAAGCAAGGAGGTTATCTCTATATGCTACTTGACAATGATAATTGTGATGTGTAATGCCTTTTGG TTGTATTGGATATAGGATCTAACTTATTTAGATGTGAGATTGAGTCATGTGCCATAACCTTAACAACTATCATTCTTTTA GTAGTCATGGACTCGTGATTGATTAAATCCCCCCCCCCCCCTACTTAGTTGGGGACTTGGGGTAATACTTTGCATGGACT TCTTAACGAATGCTAAACCCTGGTTCTGAGGAGGACCTTTAACTAATATTATTTGGAAGTGGCAAAGTTGCGATTTAATT CTATAAGAGTTCTCATTTTCTATATCCTTATTTCTACGATGTGCCAGTAATTTGTAGGTGCTACGCTGCAAGCTGATTTC CAGTAGTAAATAGGGTTATGTCCTGTTCTTCACTTCTCGTTACTTTACTAGAGAATGAGAAAAGCATATTTTTTCTAATT TAGGTGTTGACTTTTGCAAAAACTAACCAACCGCATGAAGTGTGTGTGAGCGTGATGCTAGCATTTCTCATGTTTTAAAA GTGAGTTTAGACTTTTCAAGAATTGATTTTATTTGAAAGGTAAAGTAGAGTCACTCTTTAAGTGTAAATATAAAAATATT TTGTCAAAAAATTATTCTTCATACACCCACAACCTATTCTATTTTCCTTGAAAGCTAAACATTTTCACTTCTTTCAAAAT CAATTCTACCCAGCACAAAATTGATTTTATTAGTCAAAATTAATGCCAAACGAATTCATTTACTTTGGGACCCCATTTTA TTTGCCGCAGATGGGAATTGGGGAGTAAACAAACATGCACTTCAGCACTTGTGGATAATCTCTTCAAGGGTTTTGTAGTT GCTCTATGTGGATATTGATTTGTTTGTTTCATGCAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCCCTAGATAGGACA CTTGCAGAGTCTATTGGTGTGAATACCAACAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCTCTTAGTCTTGT GGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTAAGAGTATGGAGCTCCTTTTCTTTTGTTT ATGTTTATACTTTTTTGGCTGTCATTTGTTTATTATTGTACTGGTAGGTGTATTAATACCCTTGTCTGTTGAAAGACTGA GTAAACCAGGTTATGAATTTCACACTTTCAGCTAGACTGATTTCAGCCAATCACCATTTACCATTGAATTTTACCTAGTT TTTTAAAATACTCATCCACTCATCCTACAAAAGGTATTCAATTTGATATAAGCATGTGTTGGTGGATTCATATATCTAAT TCTTGTATTTCCTTATGCTTATCACCTGTATATATAAAGTTAAGGGAGCATGAGATATGTGATTTAGAAACTGAAATCTT GTTCTAGAATGTTCGCATTTTTTTACCAGACTTGGGGTTAACTTTTGTTCATTCTTTAATTAAATAGTTATATTTTGCAT TTTGTCTTCTTGAACCCACATTTGCACAGACTTGAGTTTTATATAAAGGTGGAAACTGGAAAGAATGAGTAAAATTTTAG TCTTCCTCTTTTACCTTTCTTCGTACTTCTCCCATTTGTTTTTATTTTAACTCCATGCGGTTTACATTCTGTCATTTAAA TCTTGTTTCATTGGTTTAAATATCTCTTATGCTCTAGGTCTTTGTCTACTAACTTTTTGCAGTCTTTTCTCTAATAGGTG GCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCA GGCACTTCGAAAATTGAGCCACTCTTTGTCGCTTTCTCAAAGTATATTGATTTTCATAAACCAGGTACCAACTAAAGTTG TTAATTGCAGTATTGCAAGTTTTCATTTGGTCACATTGTGAATATCATTTGATATTAACCTGAGCTATTTAGCACGTATA GGAAATTTTTGTGTTAGTCTGTCCTCCACTAATTTCATCTTGGTCTATGACTATGTTTCCTTGACTTATGCTGAGCAAAG TTGTTTTCACTTATCATCTATTGGTTGAGCCAATTTTGTGTTCATTATTACAAGTTCCTCTATTGTCATTCATATGTTCT TTGTGGATAACTGGATAATATTGAGCTTCTTCTCCAATTCTGTTCTGCTTCTCTACTCTTGCTAATGTAATTGCTTGTTC CAGTTCATCCTTTTTTATGCCAGTAAATGCAGAATTTAAAGCATGACTTTAATGTTTAACCTTAGATGCCAAAAGATATA TTCTACATCCGTCTATTTTTTTTTAAATATGAAATTATTTAAAAAAATATAAGGAACAAAATAGTTGGAGTTCATTGCTA ATGTAGTCATGCAAATATCAGAGCCTCAAACTCTAAAACTGAGGTGGGATTGTGTGTTTTTTATTTTCCAGATTATCTGA ATTGCTTATATATAGTAATTGTTTACTGGCCATATGCCAGTGAACCTAGCTTGTAAACTTATGTTAAGTTGCACTTGGTC TGCCAGGTATAGATCTGATTAGATGTTTTTTCGAGAGCTCTTTGATCCCAAGGCATGTTAATAACTTGCATGATATAATC CTTCACTGTTGTGTGTATCATCTGTAAGAATATATATTCTTTTGTGTATTTATCTATTTTCTTTTGGATATGAGTACTCT TGTTCAGATTACCAGAAATATGTTATTGTCTTCTCATAAACGAAAATCATTTTTACAGGTGAGGTCTAAGATTTCTACTT TTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCCTTGAAATTCTATGCTTCTGTGCGACTTAATATC AAGAGAATAGGATTTGTCAAGAAAGGCGAAGAGGTATTAATCTATTTATTCTTCTACTGTCATCCTTCCTGCTTTGGTAT TGGCATGTACGTCCAAATGTGAACTTAGTTGACTGGAATCAGCAATGTTCTGTTCTGAAACAGGCTTTCTTTTTTAATCT ACAGATCAGGTTGCATCATTTGGTTGGTATGTTTTGGACAAAACCATTTTACATGTGTTTGTTCATTGGTTATTGATCTA ATGATGTCCTGTGTAGAAACTTGAGTTTTTCCCTGTTTATCTAGGGTTGAACTTTTTCCCCTTTATCTTTTTTATGTGAT CCCTGCTTGTTCAATACTAGGGTGAAACCCGTGCGATGCACCGGTCCTTAATTAATTGGACAATTCTGTGGTTGATCATG TAAAAATTGATCAACCCATGAACTTCGTTTAATCTTTTATGGTTTTTGTTTCCATAGATTATAGGAAGCCAGGTTGTTGT CAAGGTTGTGAAGAACAAGCTTGCACCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATATCTAGGA AAGCCGAGATTATAAAGTTGAGCTTAAAATACAAACTCATCACCAAAGCTGGTTCAATGTATTACTACAACGAGCAGAGT TTCCGCGGCGGGGATGCTCTCAAGGATTTTCTGGCTGAGAATCCTACTGCATTGGAAGAACTTGAAATGAAGCTCAGGGA GAAGCTTCTCAATCCTGAAACAGAAAAGGTGCCAGAGTCAGATAGCGGAGAAGTCCTGGAAGAAATTGCAACCCTTGATT CTACTGACGAAGAAACCGCAGTTGTTGTAGAAGCATGATTTAGTGAAGTATGACTCTTTTCCCTGCCTCAATCTGGAACC ACATGATTGATGTAAATGAAGAAAGCCCTTAGAAGGGAATAGGGATGCTTACATGATACCTCAGATGCTTCACTCCTGGA ATCTCATAATTGAATTTGGTTCATCTAAAGAGGTTGGTGCACATTAGAGGGTAATGTATGGAGTTATAACTATTGATTGG GAAATTAATAGATGAGACTGACAAAGTTGTTCTGATTTTCCAACCCTTAGTGGAGTCAAATTCTTCATCATTCTAGCTTG TTATTAAATGTTTAGGTCACTGCACCCACCTGTAAATTAATTTTTTGTGTCATTTTATATACGCCTGAGTCATATGGCAC GTGTATGGTGACAGTAAAGGACTAACTGGTTAGAAAGTAATGTCCTTGCTCCAGAGTATAGTAATCATCAAATTTTTGTA AGGATTTTGCTGTGCAAGATTGCAAGCTGTGCACATGTATCTCATTGGAATCTTTGATATCTGTGA
CDS sequence (LotjaGi4g1v0310500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGGCTGTTTCGGAACACTATCCTTCTCAGTCGCTCCCTGTTCGTCCCTCAGGGCTTTAAACTAGGAATATGTGG CACTTCACAGGCTTTGAGCTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACA TGTCTAAGAAAGACTTGGCCCTTCAACAAGCTCTTGATCAGATTACTTCCGCATTTGGAAAAGGATCTATTATGTGGCTT GGTCGCTCTGTCTCACCAAAAAATGTACCTGTTGTGCCTACTGGTTCTTTTGCTCTAGATTTAGCACTAGGAATTGGTGG CCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACTACTCTTGCTTTGCATGTGATTGCGG AGGCACAGAAGCAAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCCCTAGATAGGACACTTGCAGAGTCTATTGGT GTGAATACCAACAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCTCTTAGTCTTGTGGATACCTTAATCCGTAG TGGTTCAGTTGATGTAATTGTTGTTGACAGTGTAAGAGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGG GTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCACTCTTTGTCGCTTTCTCAA AGTATATTGATTTTCATAAACCAGGTGAGGTCTAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTG TGGTGGTAATGCCTTGAAATTCTATGCTTCTGTGCGACTTAATATCAAGAGAATAGGATTTGTCAAGAAAGGCGAAGAGA TTATAGGAAGCCAGGTTGTTGTCAAGGTTGTGAAGAACAAGCTTGCACCTCCATTTAAAACTGCTGAGTTTGAGCTTCAA TTTGGCAAGGGTATATCTAGGAAAGCCGAGATTATAAAGTTGAGCTTAAAATACAAACTCATCACCAAAGCTGGTTCAAT GTATTACTACAACGAGCAGAGTTTCCGCGGCGGGGATGCTCTCAAGGATTTTCTGGCTGAGAATCCTACTGCATTGGAAG AACTTGAAATGAAGCTCAGGGAGAAGCTTCTCAATCCTGAAACAGAAAAGGTGCCAGAGTCAGATAGCGGAGAAGTCCTG GAAGAAATTGCAACCCTTGATTCTACTGACGAAGAAACCGCAGTTGTTGTAGAAGCATGA
Protein sequence (LotjaGi4g1v0310500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARLFRNTILLSRSLFVPQGFKLGICGTSQALSFSSKGRRRSKSDGSDSGEENMSKKDLALQQALDQITSAFGKGSIMWL GRSVSPKNVPVVPTGSFALDLALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCAFVDAEHALDRTLAESIG VNTNNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVRVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQ SILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLAPPFKTAEFELQ FGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAENPTALEELEMKLREKLLNPETEKVPESDSGEVL EEIATLDSTDEETAVVVEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 396 | 396 | 9.1E-224 | – | |
| PANTHER | 1 | 396 | 396 | 9.1E-224 | – | |
| MobiDBLite | 36 | 56 | 21 | - | – | |
| MobiDBLite | 38 | 55 | 18 | - | – | |
| TIGRFAM | 57 | 381 | 325 | 1.3E-136 | ||
| Hamap | 57 | 386 | 330 | 42.983 | ||
| Pfam | 60 | 326 | 267 | 8.4E-118 | ||
| SUPERFAMILY | 61 | 325 | 265 | 5.51E-55 | ||
| Gene3D | 88 | 390 | 303 | 1.2E-92 | – | |
| ProSiteProfiles | 88 | 249 | 162 | 30.831 | ||
| SMART | 110 | 286 | 177 | 2.4E-5 | ||
| PRINTS | 146 | 175 | 30 | 1.4E-59 | ||
| PRINTS | 220 | 249 | 30 | 1.4E-59 | ||
| ProSiteProfiles | 259 | 330 | 72 | 27.151 | ||
| PRINTS | 268 | 296 | 29 | 1.4E-59 | ||
| ProSitePatterns | 271 | 279 | 9 | - | ||
| PRINTS | 301 | 330 | 30 | 1.4E-59 | ||
| SUPERFAMILY | 327 | 382 | 56 | 4.19E-8 | ||
| PRINTS | 354 | 371 | 18 | 1.4E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi4g1v0310500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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