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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0230700 |
| Transcript ID | LotjaGi6g1v0230700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53940055..53946043) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGTTTCTTTTCCTCTCTGAAATTGAAAATGGAGGGAAACCAAACCCTAAAAATGAGGCAAAAGGGTCCTTGGCTCCA TGCAATTGCAATGCAATATAAAATTAGAAAAAAAAAAAAAACAAATTCAGTTTCCTGCAGTTCTCACTCCACACTTCATC TTCCACATTTGGTGCTTCCATGGCGAGGCTGCTTCGCAACGCCAACACGTTCCTTCTCAAGCGCTCTTTCCTTCACCATA ACCTTCCCACTGTAATGCATTACACACATCCTTTTTTTTTTCTTTTCTCGTTTTACGTGCTTAGACATTGGCTTGGTTTC GGTGCATGTACGATGATCGATTCGCTTACCCTTTTGCTCGCAGCGTTCTTGCTATGAACAAGGAGTAGTGGGCACGTCTC AAGTTTTGAGCTTTTCAACGCATAAAGGTTTTTGATACTTTTTCCCTTCTCGCACCTTTCATAGAGAATGTGTTCCAATT TGTGATTGATTTTCATTTTGTTGAGTTGATTCTAGAATTTAGATGCTGTTTTAGTGTTGTATGAACCAAGCAGGACAAAA AAATGAAATTTTTGTTGTGAGTTTCATGCATTTTAGTCCCGGTAAGCACAATACTGGGTTTGATGTTTTTCCCTCTTTTG GGGTAGGGGTTTTTGGAGGGGAAGGTAGGGGAGTTCTATGTTATTAAACTTTTTTTTGGGTGCATCGGAAAGACAAATTA CACCTTGTACAATTCGCTCCTCAACCCATGTCCCCACAGCTCTTACCACTTGAGCTATCATTCGGGGACAAAGGATAAAT TAAGAGAATTATATACTGTGTATGATAATATACAAAGGATAAAAATATTAAGTTCATGTTAGTCTATATCAGGGTTGTTA ATGGCGGATAGCGTAGTGTAGCAGCAAGCCCAAAAAACGCTATTTCGAGCGCTATAGCGGCAAATAGCGCAAATAGCGGT AAATAGTGGAGTAGCGGTGAACCCCCAGGGCGCTACGCTATAGGCTATTGCGCAGCTATAGCGCGCTATTAACAAGCCTG GTCTATATCTTTCATTCTAAGAAGGTATCAAATTAGAAAATATTATTTGTCTAAATGAAAATTTTGCCACTGCATCCCTT CCCCTCCAAAACCCCCTCCCAAGCCACAAGAGTTTGTGCTGATTTTGTGTTAATGATGTTTTTTATATACATGAAGGTAA AAGGCGCTCTAAGTCAGATGGAGATGAGTCTAGTGAAGAGAACATGTCTAAAAAAGATTTGGCCCTACAACAAGCCCTAG ATCAGATCACTTCTGCATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTCTCACCCAAAAATGTACCTGTGGTG TCAACTGGTTCTTTTGCTCTTGATATAGCTCTTGGAATCGGTGGTCTTCCAAAGGTATCCTTAGATCTTTTTCTTTTGAT GCGCCTGATTCAATATTGAGATTTTATTTAAATACATTGAATGAGTTGTTATTGGATAAGTTACTCATGCTGATGACAGA GGATATATGTATTTTTTGCTCTGGCTCAATTTGTTAAGTTCCTCTCCACATTTCTTTTGCATGTTTCCTTTCATTTACAC TTTTTATAATTTATTCTGATCTATCGAAAAATCATCATCTATTACTGTTTTGTATGCCCATCACTTGTTAATCTTCTTTA CTGATTGTTGTTTTGATAGTGACTGTGTGAAATATGTTCCTGGTTATGAGATGACACTTGCATTTTGGTTTCCATATATG TCATTGGAGATATATATGTTGAGAAAGAGCAATGAGAGAATCAATCTTATGTTTCATTGTGCAACAATTATGTTTTGATT ATTGTATATAACTGTGATGTCTTTAGGGGCGTGTTGTGGAAATATTTGGTCCCGAGGCTTCTGGGAAAACAACTCTTGCT TTGCACGTGATTTCAGAGGCACAAAAGCTAGGAGGTTATCTTTATGTGCTATTTTGAAGTGATAACTGTGATCTCTATAA GTCCATTGCTTATGTGTTCTGCTTGTATTAGATTAAGCATTTCAACTGTTGTTTGTTATATGTATGACCATAATCGTCAT GTTCTGATATTTTTCCCTTTCTCTTACATGTGACTAATCATAATCATAATGTCATACTTTGAATGGATGTTTTTTTATTT TGATTTTTATGACATTTTAATGTATGTCTAAATTAGCTTCTCTTACGCTTTTGACTAATACTGTTTAAAAAATGAAAATT TGGTGTTCCCATTCATCCAAGTCCAAGGCTTGTCATTTTATTAATTTGTGCTTCAAAACTTCACCACAATTTGTAGGTGC TTCCAGATTTTTTAGTTGCATGAACAGGGTTATGTTCTACCCTCTCCACCCCTCCCCCTCCTTTTTGATATAGAATGAAG AGGTTGTACTGTTTGTTTAATTTAAATTTTACACTAATTATCTTTGGGGGCTATGCTAATCTTTTTGCACTTAATGCTAC CATGAGTTAAATGAAGATTACTACTAGGGCTGTATACTTTTGGTAGTTGGTTCCGTGGTTAACTGGTTAACTTATTAACA GTATCTCTATTAATTAATTTGTTTGTATCATGTAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACAC TTGCAGAGTCTATTGGGGTAAATACTAAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTGTG GATACCTTAATCCGGAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTAAGTATGGAAGTCTTCATCTTTTTTTTTTA TTAGTACTTTCTTGAGTGTGTGGGTGTGTGATGAATTAATTCTACTTCAACTTTTGTACAGCTAGTAGTATGTTTGGTAA GTTCTTGGGATCCTGAAATCTGTGATGTGGGTCCTGTTGTGGAATTGATGTGTCTTTTAGCATAGACACTAGACCTATCG AAGTTCTTAATCCTTTTTTCGTATTTTTTCTTTGTAATTTTAATAGGTTTTAGATTATGGTATTTGCATCTTTTTTCTCT AAGTTAAGTAAACGTCTTCAACTTTTGCATAAACATGTGTCTTTGAGCATAGACACTAGGCCTAATTTTCAAAGTTCTCA ATCCTTTTTATGTATTTTGTATTTTTATTTTTAATAGGTTTTAGATTACATTACTAGTATCTTTAGTAAACGTCCTTGAC TTTTTGCCATGTTTCCATTTATAGGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCATAT GGCAATGCAAGCTAGGTTGATGAGCCAGGCACTGCGGAAATTGTGCCACTCCTTGTCACTTTCACAATGTATATTGATTT TTATAAACCAGGTATCGGCTACCGTTGATTATTTCACTGTCATTGATTTTCTTTTGGCTTAATTGTGAAAATAATTTTAT TTTTTCTTGAGCAATGTAGGTTGCATAGCAAAATTATGTTCTTGTTGGATTAGTCTGATGTATACTGATATCACATTGGT CTATGACTAAGTTTTGTGGTCTTGAGTCAGTGTGGTTCCATTTGCATTTAATGGTTGAGCTTGGGCTTGTCTAGTGTGCG ATAGCCAATGTGCTTTTAGGTTCATTACTACAAGGTATTGTTGTTTGTTAGGAATTTAGAGCATAAATATGAAGATAAAT GTTTTCAGTAGAAATACCAAGAAAACCATGGATAACCAGACACTGCTCCTCGGGGAAGATTCTTGCCCATCTCAAAAGCT GAATACACTAACCCATACAAAATATCACTATGGCATGGTCTCAACTCTCATTTTTCTCATCACTAACTTCCCGCATCCTC ACCCTGCCCTTTCTGACCTTGTTTCATTGCTCTTCTATAATACCTCTTCCAAACCATAGGCCCATGAGCTACTATCCGGC CTTTTAACTTTCTCTCTATCCAATTCAAGCCTCACAGTTCCATTGTTGTAATTTGTATGTTTTATAATTTTCACTATGTT GTTGTGTTGATATTTAACTTTTGTTCCGCCTGGCCTTTTTTTGGTTCGTGTTCTAGTTAATGTTATTTCCTAGCTACAGT TTCATCCATTTTCTTTTTTATCCAGGTAAAGCTGCATGAGTGCAAAATTTAGTGCATGCTTTGATGTGTAAATTGTAAAT ATTAGAGATCAAAGTACTAAGGTTATAATAGTACTCTTAATAGAAAGCAACATGGATTCCATTGACCAAAAACTAAGAAA GATGGAATGTGTTGTTGTATTTTGACATAAATGATTATCTAAACTGATTTAATGTGATGCTGATATATCGGTACTGATGT TTCGGTGTGCTAATTTCCGTTTGCTAGTTTACCAATTTTGTGAAGTTGTGGAGGCTGAGCTTACATTTCAGGCTTCATGA TTTTGCTTGGTTGAGATAGCTGTTTGGTCCTAGGAATGTTCTTGTTAAATGAGATGCATGTTACTGTCTTTTACTGTTTA TATATCGTGTAAGAGTATATGAATCTTCTTTTTTTGGTATAGGTAATTTTGTTCAAATTACCTGAGGGAAAGATTTATCT TTTAATTATGGGAACTTTTGTGTATGCTTCTCCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACT GAAGTTACTTGTGGTGGTAATGCATTGAAATTTTATTCTTCTGTGCGGCTAAATATCAAAAGAATAGGGCTTGTCAAGAA GGGTGAAGAGGTACTAATCATCTATTAATTCTTCTTTTCTCTTGCAATTATTATTGTCTCAAATAGAGTTATTAATTGCT CACAGTGCTGACCCTTAAATTGGTACACTACAGTAGCTAATCTTGTATAAAGCCTGTTTCACTCGTGCTTGATCTTTTGA ATGTGATCTATGTCTGTGCCATATTGTTTTAATATTGCTTTGAATGCATTTAAGTCTAATTTATGGTATACTCTACCTTT ATGGCATTTTACTTTACAGACTTTAGGAAGCCATGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAA CTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATATGTAGAGACGCAGAGATTATAGAGTTGAGCATAAAATACAAACTC ATTAGAAAGAGTGGTTCATTTTATGAATATAATGGCCGGAATTACCACGGTAAGGATGCTCTAAAGAGGTTCCTGGCTGA CAGTGGCAGTACAGAAGAATTAGCAACAAAGCTAAGGGAGAAACTTCTTAATGGCGAGACAGATACGGCTCCAGAGGCGC AAGTGACGATTGGAGATGTTTCGGAAGAAACGGTATTTCCTGATTCTACTGATGAAGAAGCAGCTGCTGTTGTCGAAGCA TGAATTTGGACGTGAGGCATCATGCATTATTTTCCCTGGATTAAAAATGTCATTTTCCTGGCCAAATGAGGTTTCTTCAC CCTCTTTTCGTGTGAGACTAATCCTCACTTGAAGTAACTATTGTGATTTGTGTGTGCCATAGATTGAGGAAGTGACCACA AAAGGCCCCCACTCAAATGAAGAAGGCTCTAACAAGCAACTATTCCTCATGCTTCTATTTTGGAACGATACATTCACATT TCCTTGTAAATTGGAAATTTTGGCCATTTTATGTGCAGGTCATGAGTCATGTGGCAAGTCCAAGTTTTGTGGCTGAGAGG AAATGATTTTCTACCTGGTTAGGAATCAAGGGCCAAGGGTAGTCAAGTGTTTGTGATAGTTTAGGATTGATGGCTATGTA TCTCATTACTAGCTAGTGGTAATGTGGTATGAACTATGAACGAAAATTGAATAGGTTATTTGTGATACATGTTTAATTTG CAGATAAAAAATTCAGTTTTCTCCAGTAAAAAATAGCAGAGCGATAGATGAGAAGTTATCTCCACCAATTGTTTGGTGGA GATAGCTTTTCTTAGATTTTTTACACGTATCATCTCCAAATACATTCTTGTGTTACAGTTTTTAAATCA
CDS sequence (LotjaGi6g1v0230700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGGCTGCTTCGCAACGCCAACACGTTCCTTCTCAAGCGCTCTTTCCTTCACCATAACCTTCCCACTCGTTCTTG CTATGAACAAGGAGTAGTGGGCACGTCTCAAGTTTTGAGCTTTTCAACGCATAAAGGTAAAAGGCGCTCTAAGTCAGATG GAGATGAGTCTAGTGAAGAGAACATGTCTAAAAAAGATTTGGCCCTACAACAAGCCCTAGATCAGATCACTTCTGCATTT GGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTCTCACCCAAAAATGTACCTGTGGTGTCAACTGGTTCTTTTGCTCT TGATATAGCTCTTGGAATCGGTGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCCGAGGCTTCTGGGAAAACAA CTCTTGCTTTGCACGTGATTTCAGAGGCACAAAAGCTAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGAT AAGACACTTGCAGAGTCTATTGGGGTAAATACTAAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAG CCTTGTGGATACCTTAATCCGGAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTG AGCTTGATGGTGAGATGGGTGATGCTCATATGGCAATGCAAGCTAGGTTGATGAGCCAGGCACTGCGGAAATTGTGCCAC TCCTTGTCACTTTCACAATGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGG GCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTTTATTCTTCTGTGCGGCTAAATATCAAAAGAATAGGGCTTG TCAAGAAGGGTGAAGAGACTTTAGGAAGCCATGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACT GCACAGTTTGAGCTTGAGTTTGGCAAGGGTATATGTAGAGACGCAGAGATTATAGAGTTGAGCATAAAATACAAACTCAT TAGAAAGAGTGGTTCATTTTATGAATATAATGGCCGGAATTACCACGGTAAGGATGCTCTAAAGAGGTTCCTGGCTGACA GTGGCAGTACAGAAGAATTAGCAACAAAGCTAAGGGAGAAACTTCTTAATGGCGAGACAGATACGGCTCCAGAGGCGCAA GTGACGATTGGAGATGTTTCGGAAGAAACGGTATTTCCTGATTCTACTGATGAAGAAGCAGCTGCTGTTGTCGAAGCATG A
Protein sequence (LotjaGi6g1v0230700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEENMSKKDLALQQALDQITSAF GKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALD KTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCH SLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLGSHVLVKVVKNKHAPPFKT AQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNYHGKDALKRFLADSGSTEELATKLREKLLNGETDTAPEAQ VTIGDVSEETVFPDSTDEEAAAVVEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 420 | 420 | 1.2E-257 | – | |
| PANTHER | 1 | 420 | 420 | 1.2E-257 | – | |
| MobiDBLite | 43 | 64 | 22 | - | – | |
| MobiDBLite | 46 | 63 | 18 | - | – | |
| TIGRFAM | 65 | 386 | 322 | 7.6E-134 | ||
| Hamap | 65 | 392 | 328 | 41.946 | ||
| Pfam | 68 | 331 | 264 | 4.7E-117 | ||
| SUPERFAMILY | 69 | 331 | 263 | 4.93E-55 | ||
| Gene3D | 96 | 392 | 297 | 1.0E-93 | – | |
| ProSiteProfiles | 96 | 255 | 160 | 34.378 | ||
| SMART | 118 | 292 | 175 | 3.2E-6 | ||
| PRINTS | 154 | 183 | 30 | 4.1E-72 | ||
| PRINTS | 188 | 217 | 30 | 4.1E-72 | ||
| PRINTS | 226 | 255 | 30 | 4.1E-72 | ||
| ProSiteProfiles | 265 | 336 | 72 | 25.345 | ||
| PRINTS | 274 | 302 | 29 | 4.1E-72 | ||
| ProSitePatterns | 277 | 285 | 9 | - | ||
| PRINTS | 307 | 336 | 30 | 4.1E-72 | ||
| SUPERFAMILY | 335 | 385 | 51 | 3.01E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi6g1v0230700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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