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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0310500 |
| Transcript ID | LotjaGi4g1v0310500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A151SS31|A0A151SS31_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0310500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68671791..68678503) extracted from Lotus japonicus Gifu genome v1.2.
AATACATTGATTAAAAGGCCATAAACCCAAACTTTACAAAGACTGTGTGTGTGACAGTATTGGGTTGGAAACTGAAAAGG GAGGGAAATGAAACACCCTATGAGATCGAAACCCTAATAAACAAAACCAAAACCAAAACCAAAACCCACCAAGTTCAGTG CAGTGCAGTGCAGTGCAGAACTGTGTAGTTCACTCCTCCATGACTGGCATGCATCCACATAAATTCAATTCCATTTTCCT TCACACTTCACTGTATAAATAAGTATTCAGGTGACAACTTTCAAGCTTGGAACGCGCTCTGCTTGCTTCTATGGCGAGGC TGTTTCGGAACACTATCCTTCTCAGTCGCTCCCTGTTCGTCCCTCAGGTGAATACAACACAACACGTGCTTTCTTTATTT GCAATCTCCTCTTTTATTCAATTAGTTGATTGATTATGTTTATGCACGCACAGTGATCACTTTTGGTTACCAAACATGTC TTCACTGAAATGAAATTGGTACATACTCAACCATTCATTGACATATTTTTTGCCTTCATTTTCAGGGCTTTAAACTAGGA ATATGTGGCACTTCACAGGCTTTGAGCTTTTCATCTAAAGGTGGTTTAATGAAACTCTCTTGCTTTATTCCCTTCTCTTT ATACCTGAAATTGAAAGATGATATAGTTTGGAGGAGTTAATTTATACTGAATGGTCATTTATGCGAATCAACATGCAAAA CGATTATCATATGCTTTTGAAAAATGTGAATTACTAGCTAAAACCCAAGTTTTAAACTGTTGGTTGCATGATTGTTGTGT ATTTGAATGCCTGCCACTAAGCCTGGTCACATTTGACTTAGGAGTTTCTGCCGTTTCTTGTCGCAAATTTATCTCGCTTT TCTTTTTTATACTTGTAGTCCTACTATGACTAATGTGAAAAAGGTAGAAACAAATGAGTAATAAGAGATTGGGGAGAAAC ATGTGGGGAGTAGCATGAGAGGATGAATCAGCACAGGCAATTGTGTAACCTCATGCCTACGTGGCAGGATGGGAGGGAAA TCAGGAAGGGGGTTGGTTATATGGTTAGGAATGAGGAAAGAAATGGAGTAATAGAAGGGGGAAGAGGCAAAAGAGAGAGG GAGGAAAAATGGATGGAGGAACCAGGACTGGTACAGGCCTATTATGTGTGAGAAAATGAAAGAAAATGTTCAGATTGAGT TTACTTTTGCTGGAAATGACTTCATGAATTAAGTATTTTACAATACAGACCAGAGATAAATTTGTAGTTTGAGAATGAGG GGGCTAACTTTTTAACTACTTAACTATCTCCCAGCTTAGCTGATTCAGCAAAAGTTTGGTTATAACAAACTTTAGTCACT ACCACATATGCATAGTTACTCTAGTAAGGACTCTTGAATTGCCTACGGGCTACGGTATTTGTATTTACTTGTTCAGAGAT TTCATACCAGTTTGATTTCTTGCCTACCTCTGCTATTGATTTCAGTAGCAGATTTGTTGTAAATATTGCACTATTTCAAA TCATTCTGCTCTAGTTTCCTATGTTCTTTCAGTTTTTATTGGAGTTTGTACCAATTTGAAGTTAACAAGATGTTGACAAC ATTTTCATTTCTACATACCTGAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAG AAAGACTTGGCCCTTCAACAAGCTCTTGATCAGATTACTTCCGCATTTGGAAAAGGATCTATTATGTGGCTTGGTCGCTC TGTCTCACCAAAAAATGTACCTGTTGTGCCTACTGGTTCTTTTGCTCTAGATTTAGCACTAGGAATTGGTGGCCTTCCAA AGGTATACCTAGATCCCTGCATGAAGAAGTTTCTTGCTCACTTGTCACATGTGGATAAACTAGAACCTTTTTTAATGTAT CTAATGGTTACTACTTACTGGTGATAAAGTTTCTATTTTTCCCACCCTTTTTTGTTTTCCTTTTACATTGAGTTTTGTCT ATTTCCTTGCAGTCGATTCTATCTGCTACGATGAAGAAATAGTCTATATCAGTTGTTTATAGTTGTTATCATTGGTTAAT ATTCACGACTCATTATTTTGGTTGACAGTTTCTTACAGATAAAAATGTTTCTGGGTAAAGAGTCATTGTTTGGCTTTCAT TTTCCTCATGCATGACACCCACACACCCACACGCATGCACACGTACCGCACACGTACTCATGCTAACTATTATATGTAAT TGTTTGATGTTTGTAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACTACTCTTGCTTTGCATGTGA TTGCGGAGGCACAGAAGCAAGGAGGTTATCTCTATATGCTACTTGACAATGATAATTGTGATGTGTAATGCCTTTTGGTT GTATTGGATATAGGATCTAACTTATTTAGATGTGAGATTGAGTCATGTGCCATAACCTTAACAACTATCATTCTTTTAGT AGTCATGGACTCGTGATTGATTAAATCCCCCCCCCCCCCTACTTAGTTGGGGACTTGGGGTAATACTTTGCATGGACTTC TTAACGAATGCTAAACCCTGGTTCTGAGGAGGACCTTTAACTAATATTATTTGGAAGTGGCAAAGTTGCGATTTAATTCT ATAAGAGTTCTCATTTTCTATATCCTTATTTCTACGATGTGCCAGTAATTTGTAGGTGCTACGCTGCAAGCTGATTTCCA GTAGTAAATAGGGTTATGTCCTGTTCTTCACTTCTCGTTACTTTACTAGAGAATGAGAAAAGCATATTTTTTCTAATTTA GGTGTTGACTTTTGCAAAAACTAACCAACCGCATGAAGTGTGTGTGAGCGTGATGCTAGCATTTCTCATGTTTTAAAAGT GAGTTTAGACTTTTCAAGAATTGATTTTATTTGAAAGGTAAAGTAGAGTCACTCTTTAAGTGTAAATATAAAAATATTTT GTCAAAAAATTATTCTTCATACACCCACAACCTATTCTATTTTCCTTGAAAGCTAAACATTTTCACTTCTTTCAAAATCA ATTCTACCCAGCACAAAATTGATTTTATTAGTCAAAATTAATGCCAAACGAATTCATTTACTTTGGGACCCCATTTTATT TGCCGCAGATGGGAATTGGGGAGTAAACAAACATGCACTTCAGCACTTGTGGATAATCTCTTCAAGGGTTTTGTAGTTGC TCTATGTGGATATTGATTTGTTTGTTTCATGCAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCCCTAGATAGGACACT TGCAGAGTCTATTGGTGTGAATACCAACAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCTCTTAGTCTTGTGG ATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTAAGAGTATGGAGCTCCTTTTCTTTTGTTTAT GTTTATACTTTTTTGGCTGTCATTTGTTTATTATTGTACTGGTAGGTGTATTAATACCCTTGTCTGTTGAAAGACTGAGT AAACCAGGTTATGAATTTCACACTTTCAGCTAGACTGATTTCAGCCAATCACCATTTACCATTGAATTTTACCTAGTTTT TTAAAATACTCATCCACTCATCCTACAAAAGGTATTCAATTTGATATAAGCATGTGTTGGTGGATTCATATATCTAATTC TTGTATTTCCTTATGCTTATCACCTGTATATATAAAGTTAAGGGAGCATGAGATATGTGATTTAGAAACTGAAATCTTGT TCTAGAATGTTCGCATTTTTTTACCAGACTTGGGGTTAACTTTTGTTCATTCTTTAATTAAATAGTTATATTTTGCATTT TGTCTTCTTGAACCCACATTTGCACAGACTTGAGTTTTATATAAAGGTGGAAACTGGAAAGAATGAGTAAAATTTTAGTC TTCCTCTTTTACCTTTCTTCGTACTTCTCCCATTTGTTTTTATTTTAACTCCATGCGGTTTACATTCTGTCATTTAAATC TTGTTTCATTGGTTTAAATATCTCTTATGCTCTAGGTCTTTGTCTACTAACTTTTTGCAGTCTTTTCTCTAATAGGTGGC TGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGG CACTTCGAAAATTGAGCCACTCTTTGTCGCTTTCTCAAAGTATATTGATTTTCATAAACCAGGTACCAACTAAAGTTGTT AATTGCAGTATTGCAAGTTTTCATTTGGTCACATTGTGAATATCATTTGATATTAACCTGAGCTATTTAGCACGTATAGG AAATTTTTGTGTTAGTCTGTCCTCCACTAATTTCATCTTGGTCTATGACTATGTTTCCTTGACTTATGCTGAGCAAAGTT GTTTTCACTTATCATCTATTGGTTGAGCCAATTTTGTGTTCATTATTACAAGTTCCTCTATTGTCATTCATATGTTCTTT GTGGATAACTGGATAATATTGAGCTTCTTCTCCAATTCTGTTCTGCTTCTCTACTCTTGCTAATGTAATTGCTTGTTCCA GTTCATCCTTTTTTATGCCAGTAAATGCAGAATTTAAAGCATGACTTTAATGTTTAACCTTAGATGCCAAAAGATATATT CTACATCCGTCTATTTTTTTTTAAATATGAAATTATTTAAAAAAATATAAGGAACAAAATAGTTGGAGTTCATTGCTAAT GTAGTCATGCAAATATCAGAGCCTCAAACTCTAAAACTGAGGTGGGATTGTGTGTTTTTTATTTTCCAGATTATCTGAAT TGCTTATATATAGTAATTGTTTACTGGCCATATGCCAGTGAACCTAGCTTGTAAACTTATGTTAAGTTGCACTTGGTCTG CCAGGTATAGATCTGATTAGATGTTTTTTCGAGAGCTCTTTGATCCCAAGGCATGTTAATAACTTGCATGATATAATCCT TCACTGTTGTGTGTATCATCTGTAAGAATATATATTCTTTTGTGTATTTATCTATTTTCTTTTGGATATGAGTACTCTTG TTCAGATTACCAGAAATATGTTATTGTCTTCTCATAAACGAAAATCATTTTTACAGGTGAGGTCTAAGATTTCTACTTTT GGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCCTTGAAATTCTATGCTTCTGTGCGACTTAATATCAA GAGAATAGGATTTGTCAAGAAAGGCGAAGAGGTATTAATCTATTTATTCTTCTACTGTCATCCTTCCTGCTTTGGTATTG GCATGTACGTCCAAATGTGAACTTAGTTGACTGGAATCAGCAATGTTCTGTTCTGAAACAGGCTTTCTTTTTTAATCTAC AGATCAGGTTGCATCATTTGGTTGGTATGTTTTGGACAAAACCATTTTACATGTGTTTGTTCATTGGTTATTGATCTAAT GATGTCCTGTGTAGAAACTTGAGTTTTTCCCTGTTTATCTAGGGTTGAACTTTTTCCCCTTTATCTTTTTTATGTGATCC CTGCTTGTTCAATACTAGGGTGAAACCCGTGCGATGCACCGGTCCTTAATTAATTGGACAATTCTGTGGTTGATCATGTA AAAATTGATCAACCCATGAACTTCGTTTAATCTTTTATGGTTTTTGTTTCCATAGATTATAGGAAGCCAGGTTGTTGTCA AGGTTGTGAAGAACAAGCTTGCACCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATATCTAGGAAA GCCGAGATTATAAAGTTGAGCTTAAAATACAAACTCATCACCAAAGCTGGTTCAATGTATTACTACAACGAGCAGAGTTT CCGCGGCGGGGATGCTCTCAAGGATTTTCTGGCTGAGAATCCTACTGCATTGGAAGAACTTGAAATGAAGCTCAGGGAGA AGCTTCTCAATCCTGAAACAGAAAAGGTGCCAGAGTCAGATAGCGGAGAAGTCCTGGAAGAAATTGCAACCCTTGATTCT ACTGACGAAGAAACCGCAGTTGTTGTAGAAGCATGATTTAGTGAAGTATGACTCTTTTCCCTGCCTCAATCTGGAACCAC ATGATTGATGTAAATGAAGAAAGCCCTTAGAAGGGAATAGGGATGCTTACATGATACCTCAGATGCTTCACTCCTGGAAT CTCATAATTGAATTTGGTTCATCTAAAGAGGTTGGTGCACATTAGAGGGTAATGTATGGAGTTATAACTATTGATTGGGA AATTAATAGATGAGACTGACAAAGTTGTTCTGATTTTCCAACCCTTAGTGGAGTCAAATTCTTCATCATTCTAGCTTGTT ATTAAATGTTTAGGTCACTGCACCCACCTGTAAATTAATTTTTTGTGTCATTTTATATACGCCTGAGTCATATGGCACGT GTATGGTGACAGTAAAGGACTAACTGGTTAGAAAGTAATGTCCTTGCTCCAGAGTATAGTAATCATCAAATTTTTGTAAG GATTTTGCTGTGCAAGATTGCAAGCTGTGCACATGTATCTCATTGGAATCTTTGATATCTGTGATGTGCTTCCTTTTATC CCTCCGTTCTAGTTTATTGTGACCATAATTTCATAACAGGAGCGATATGAACTGGATTGGATTTTTCATGTTGTGAATCG AACGATTTAAAGGCACTTCATTATTTTTCATACAAGATTTGATTTAAATGCTCAATTGATGGTTAGGATAAGC
CDS sequence (LotjaGi4g1v0310500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGGCTGTTTCGGAACACTATCCTTCTCAGTCGCTCCCTGTTCGTCCCTCAGGGCTTTAAACTAGGAATATGTGG CACTTCACAGGCTTTGAGCTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACA TGTCTAAGAAAGACTTGGCCCTTCAACAAGCTCTTGATCAGATTACTTCCGCATTTGGAAAAGGATCTATTATGTGGCTT GGTCGCTCTGTCTCACCAAAAAATGTACCTGTTGTGCCTACTGGTTCTTTTGCTCTAGATTTAGCACTAGGAATTGGTGG CCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACTACTCTTGCTTTGCATGTGATTGCGG AGGCACAGAAGCAAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCCCTAGATAGGACACTTGCAGAGTCTATTGGT GTGAATACCAACAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCTCTTAGTCTTGTGGATACCTTAATCCGTAG TGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATG CTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCACTCTTTGTCGCTTTCTCAAAGTATA TTGATTTTCATAAACCAGGTGAGGTCTAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTGG TAATGCCTTGAAATTCTATGCTTCTGTGCGACTTAATATCAAGAGAATAGGATTTGTCAAGAAAGGCGAAGAGATTATAG GAAGCCAGGTTGTTGTCAAGGTTGTGAAGAACAAGCTTGCACCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGC AAGGGTATATCTAGGAAAGCCGAGATTATAAAGTTGAGCTTAAAATACAAACTCATCACCAAAGCTGGTTCAATGTATTA CTACAACGAGCAGAGTTTCCGCGGCGGGGATGCTCTCAAGGATTTTCTGGCTGAGAATCCTACTGCATTGGAAGAACTTG AAATGAAGCTCAGGGAGAAGCTTCTCAATCCTGAAACAGAAAAGGTGCCAGAGTCAGATAGCGGAGAAGTCCTGGAAGAA ATTGCAACCCTTGATTCTACTGACGAAGAAACCGCAGTTGTTGTAGAAGCATGA
Protein sequence (LotjaGi4g1v0310500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARLFRNTILLSRSLFVPQGFKLGICGTSQALSFSSKGRRRSKSDGSDSGEENMSKKDLALQQALDQITSAFGKGSIMWL GRSVSPKNVPVVPTGSFALDLALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCAFVDAEHALDRTLAESIG VNTNNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSI LIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLAPPFKTAEFELQFG KGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAENPTALEELEMKLREKLLNPETEKVPESDSGEVLEE IATLDSTDEETAVVVEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 394 | 394 | 1.1E-225 | – | |
| PANTHER | 1 | 394 | 394 | 1.1E-225 | – | |
| MobiDBLite | 36 | 56 | 21 | - | – | |
| MobiDBLite | 38 | 55 | 18 | - | – | |
| Hamap | 57 | 384 | 328 | 43.996 | ||
| TIGRFAM | 57 | 379 | 323 | 1.4E-138 | ||
| Pfam | 60 | 324 | 265 | 8.8E-120 | ||
| SUPERFAMILY | 61 | 323 | 263 | 4.44E-57 | ||
| Gene3D | 88 | 388 | 301 | 2.1E-95 | – | |
| ProSiteProfiles | 88 | 247 | 160 | 34.943 | ||
| SMART | 110 | 284 | 175 | 4.8E-7 | ||
| PRINTS | 146 | 175 | 30 | 1.1E-75 | ||
| PRINTS | 180 | 209 | 30 | 1.1E-75 | ||
| PRINTS | 218 | 247 | 30 | 1.1E-75 | ||
| ProSiteProfiles | 257 | 328 | 72 | 27.151 | ||
| PRINTS | 266 | 294 | 29 | 1.1E-75 | ||
| ProSitePatterns | 269 | 277 | 9 | - | ||
| PRINTS | 299 | 328 | 30 | 1.1E-75 | ||
| SUPERFAMILY | 325 | 380 | 56 | 4.19E-8 | ||
| PRINTS | 352 | 369 | 18 | 1.1E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi4g1v0310500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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