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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0463300 |
| Transcript ID | LotjaGi4g1v0463300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H1; TAIR: AT3G18035.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|Q93YH8|Q93YH8_SOYBN HMG I/Y like protein; Found in the gene: LotjaGi4g1v0463300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83331441..83334236) extracted from Lotus japonicus Gifu genome v1.2.
AAAGTTGTAAAGAAAAGGGGCCGTGGGAAGGACTAGTGAGAAATTAAGTGAAAGAGAGTGGACTTAAGACATCAACACAA CATTAGTAGCAGTTACTAGTACACATGTCCCGTGAATATATGAGTGCATGCCCATAAGATAAGAAGATAACAACAACATT AACTCACCTCGTTTTACGAAAGGGCAACCTCTCTCTCTCTCTCTCTCTCTCACTCTCGTTTCATCCAACTCACACTCCTT CCTACTCTCCATGGACTCTATTTGGGTCCCTCCTCCTCCTCCGCCACCAACCGCCGTTCCCTTCACCCAGGAAGCCATCA ATCACGCACCAGACAGCAACATCCCAATTAACTCCTCTGCCCCTGCGAATCATCCACCTTATGCTGAGATGATATACAGA GCAATTGAGGCGTTGAAGGAGAAGGATGGATCAAGCAAAACAGCAATTGCCAAGTACATCGAGGAAGCCTACACCGACCT TCCACCTGCACACTCCACCCTCTTGACTCACCACCTCAAGCGCTTGAAGGACACTGGTCTCCTCATCATGCTCAAGAAAT CTTACAAGCTCCCTTCTTCTCTCCCTTCCGACATCACTCAGAATGCTGCTCAGCCTGTCCGGAGAGGACGCCCTCCCAGA TCTGGAATTCCTAAGAGGCGCGGCCGCCCTCCCAAGCCCAAATCTCTCTCCAACGGGCTCAAGCGCCGCCCACCCAAGCA CCAATTGCAGGCCACTGTCATCCCGTTCGCTGATCCTTCTCTCGCTCAGCCGCCCGTGCCAGTTGGCTCTCCGAGGCCCA GAGGCCGGCCCAGGAAAAATGCAGCTGCACTGCCGCCGCCTCATGCGGTTGGAGGTGTCGATTCCTCCCTGATGGTGCCA GGCCGTCCCCAGAAGCTTGCCGTCAGAGGCAGGCCCAAGAATCCTGCCGGAAGGCCCGTTGGCCGCCCGAAGGTGTGTTA CTTTTTGCTGCTCTGCCTCTGCATGCTTCTAAGTTCTAAGCTATAATTACTCTTGTTTTGTAGTAGTGTTTTGTGTTTCT CTTTTGTTTCCGAGATTAACATTGTTTCATTTATGTTAGCTTGATAAGCTTATTTTAGTTAGTAAATATTGTTTTAATTT TTGTTGGTGGGGATTAAGTATTTTAGTCCATACTAGATTTTATTCAGTAAACTAAATAATGTCTCGTTTGACTTGTAGAA ATATCTACCTGGTAATGAAGATCTATGTAATAGAAAATAAGCTGATTGAAAAAAAAAAACTAGTTTGTTATACTTTGTAG TATTAAGCAAGCAGAGAGGGGGGAGAATCTTGTATTACTTTCTACTTGTTATAGTTCTGTTTTTGAATGATCAATGCAGC ATTTTGGATTGTAAATTTTATGTTTGACTTGGAAGTTGACTATGCAGGACATATGTAAACGTTGATTTGAAATGAACAAA ATGTTTGATTTTGATTTTGAAAATAAAACTAGTTGTTTATATTTCTATGTGATTTTGAATATTCTTTCATCCCAATGTAC TTATTTATGTGTTATGAATTCAATTACTTTAAATACTTTGTTATTTTTACTCTAAAAAATTTATGGAAATTGTTCTTATT TGCCATCCTTTTCTGTGGAATAGGGAACAACATCTGCTAATATAGCGCAGAGGATTGCTAATGAGAATCTAAGGAGGAAA CTTGAATACTTTGTAAGTAGAAATAATCTTCCATTTGAACTTTGAAAGCTGATCATTTGTTTCAAAGATGTTATATTTCA TGCCTTACCTCCATTGTTTCTTGTTTTACAGCAATCAAAAGTGAAGGAATCTCTTGATGTGCTGAAGCCTTATTTTGACC ATGCAAGCCCAGTGCCTGCAATTGCAGCAATCCAAGAGCTTGAAATAGTGGCAACTTCAGACCTCAAAGCACCACTAAGG GATGTTCCTTCACAGAAAATTCCTGAACAACTACCATTGCAGGAACATCTACTACCCCAGCCACTGCCGGAGCCACAGAT CACATATCAGCAACAACATCTCCAGACACAGCTGCATCAACTTTTTCAATTTCAACCACATGCTTCATTCCCAAGCTAGG AAGAGAGAGAAGACTTGCATGAGACTCAATTTGATTGAGAACCAGTTGTACAAGTGTGTTTAACAAGGTAAAAGATCTGT AAAATGAGTAGGAAGTAGTAATAGCTGAGTTTTCTCACTGAGAGTCAAATGACTGTGTACTGTCCATTTGAGTTTGTTGT TGTGCTCAAGTAGTTTAACCCTTGTAATAATAGTTAGATGTTGATGTTTCTGTTGTCATTTAAGTTTGACATAAATTTGA CTTTTACAGCTTATTTGGTCACGTTAAAGTGTATGTTAGACCATTTTAAGCTTCTATTTCTCCTGTCTGTCTCTCTTCCT TTGTTGTTTCTATTTTTAGGTAGTATTTTTTATTGTCATTTCTTATAATTGGAGTGTTATGTGAACTTTATTTACTTTTT ATTTAATCGCGTGAACCCTTTACCTGACAAGAATACAAATTATTTGATATGATTAGATTTGAGAGGATAAATTGTGTTCA TGTATGATAAAAATGAATGAGGTAAAGCTTAGCAATACAAATTTAGAGCTGATGTGGACACTGACTGTCCGAAGGCGTAA ACAAGGTGAGTTTGAGGAATGAATCAAAGCGATTGAGAAAGAAGAGAAGGTGGGACTGAACGCGAGGAACAGTCAACTGA TTGCGTTAATGGTGTAAGGGAGTGAATGAAAGGGGTGTAGTCACTTGTTTTATAGGATTGAAAATTTAGTCTTTTC
CDS sequence (LotjaGi4g1v0463300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCTATTTGGGTCCCTCCTCCTCCTCCGCCACCAACCGCCGTTCCCTTCACCCAGGAAGCCATCAATCACGCACC AGACAGCAACATCCCAATTAACTCCTCTGCCCCTGCGAATCATCCACCTTATGCTGAGATGATATACAGAGCAATTGAGG CGTTGAAGGAGAAGGATGGATCAAGCAAAACAGCAATTGCCAAGTACATCGAGGAAGCCTACACCGACCTTCCACCTGCA CACTCCACCCTCTTGACTCACCACCTCAAGCGCTTGAAGGACACTGGTCTCCTCATCATGCTCAAGAAATCTTACAAGCT CCCTTCTTCTCTCCCTTCCGACATCACTCAGAATGCTGCTCAGCCTGTCCGGAGAGGACGCCCTCCCAGATCTGGAATTC CTAAGAGGCGCGGCCGCCCTCCCAAGCCCAAATCTCTCTCCAACGGGCTCAAGCGCCGCCCACCCAAGCACCAATTGCAG GCCACTGTCATCCCGTTCGCTGATCCTTCTCTCGCTCAGCCGCCCGTGCCAGTTGGCTCTCCGAGGCCCAGAGGCCGGCC CAGGAAAAATGCAGCTGCACTGCCGCCGCCTCATGCGGTTGGAGGTGTCGATTCCTCCCTGATGGTGCCAGGCCGTCCCC AGAAGCTTGCCGTCAGAGGCAGGCCCAAGAATCCTGCCGGAAGGCCCGTTGGCCGCCCGAAGGGAACAACATCTGCTAAT ATAGCGCAGAGGATTGCTAATGAGAATCTAAGGAGGAAACTTGAATACTTTCAATCAAAAGTGAAGGAATCTCTTGATGT GCTGAAGCCTTATTTTGACCATGCAAGCCCAGTGCCTGCAATTGCAGCAATCCAAGAGCTTGAAATAGTGGCAACTTCAG ACCTCAAAGCACCACTAAGGGATGTTCCTTCACAGAAAATTCCTGAACAACTACCATTGCAGGAACATCTACTACCCCAG CCACTGCCGGAGCCACAGATCACATATCAGCAACAACATCTCCAGACACAGCTGCATCAACTTTTTCAATTTCAACCACA TGCTTCATTCCCAAGCTAG
Protein sequence (LotjaGi4g1v0463300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSIWVPPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPA HSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQ ATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKGTTSAN IAQRIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDVPSQKIPEQLPLQEHLLPQ PLPEPQITYQQQHLQTQLHQLFQFQPHASFPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 41 | 41 | - | – | |
| PANTHER | 15 | 278 | 264 | 6.4E-56 | – | |
| PANTHER | 15 | 278 | 264 | 6.4E-56 | – | |
| MobiDBLite | 23 | 37 | 15 | - | – | |
| PRINTS | 27 | 48 | 22 | 7.8E-5 | ||
| Gene3D | 35 | 115 | 81 | 6.2E-16 | ||
| SUPERFAMILY | 37 | 112 | 76 | 9.98E-22 | ||
| SMART | 38 | 104 | 67 | 1.7E-28 | ||
| CDD | 38 | 108 | 71 | 3.09564E-16 | ||
| ProSiteProfiles | 40 | 109 | 70 | 30.272 | ||
| Pfam | 41 | 102 | 62 | 3.1E-14 | ||
| PRINTS | 54 | 71 | 18 | 7.8E-5 | ||
| MobiDBLite | 109 | 239 | 131 | - | – | |
| PRINTS | 129 | 143 | 15 | 7.8E-5 | ||
| PRINTS | 134 | 144 | 11 | 2.4E-8 | ||
| SMART | 134 | 146 | 13 | 15.0 | ||
| PRINTS | 179 | 190 | 12 | 2.4E-8 | ||
| SMART | 181 | 193 | 13 | 0.67 | ||
| PRINTS | 225 | 235 | 11 | 2.4E-8 | ||
| SMART | 227 | 239 | 13 | 15.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0463300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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