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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0339700 |
| Transcript ID | LotjaGi1g1v0339700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine--tRNA ligase; TAIR: AT1G11870.2 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80081035..80088101) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAACGACGACGTGGAGTGTGTCTCTTCTCTCCAAACTCCATGGTCTATCTGTGTTTACAAAAACTAAGGATAAAAA TTCAGTGGAAGCTTCTGCCACTACCTGCTTCCGGAGATGGGTTTACACGGTTGCCTCAACATCACAACCTTACAAAGTTT CAAGCTCGGTGCATTTCGCACTTACCCATCTTCACACCAAAGAACCAAAGCTCCATTCCTTTATTCGCAGAAACCATCAT TGCCACGACCCATCAAAGCTCTCTCCACCTCCGCCGCCGCCGTTGAAACATCCCCGTCAACAACTGAGACTTCCGACGAA AAGGGTCATTCTCTTTTTCTCTTTTCGGTTTGGTTCTGGTTTCACTGCAACGAAACTGATTGGAATGGAAACTGTTGTTG GTGATGCAGGTGGGAAGCCTCAATGGAAAGCAACAATAGACTTCAAGTGGATAAAGGATAACAAGGAAGCTGTTGCTGCC AATATAAGGAACCGCAACTCTCATGCTAATTTGGACCTTGTGCTCCACCTGTATGACAGCATGTTTCACCTTCAGAAGGT TATGTTTCTTCTCTTCAATCGTCCCCTCTCTTTTTCATTGTCAATTCTAAATTATGAAAACACAGCAATGAAAAAAAAAA ATTGGAAATTGTTGTGGTAGCATGTCTTAGAATTCCGGTTAGGCCTAACTCAAGCTAGCTTAGAGGTGAGGTTTGCTCTA CCATTTGTTAGGACTTATTTGGCTATATCTCTAGTCAGCGTGAGACTTCTCAACATGATGGATTCAGTATATTCCATGAT GAATATTTATAAATTAGTTGAATAAATCAATTTCTCTCTTTTAAAATAAGGTATTCAATTTAGAAGGAAAACTAAGGAAT TACAACCATTGTGATTACATTATATACATCCACATGTATGAATAAAATTATAAAGTTGCTTAAGTCTTAGGTTATGTGTG GATATTTAGTGGCTAAAGTGCAAGATGAAAATTGATTCATGTTGCACTCATTTGCTATCCAAACACACACTTAACTGTTA ATTTTTTAAGATATGACCATAATTATTCTCTTCTGCCTCTAAAATGAATGTCTCACTTTAGTTGAGACAAATCCTAAATA TAATCAACTGCCAATGAAATGCTTGTCAGTATTGGGTACCATACCCTCAGTAGTAAGGTGGGTATTGGAGTAATGCCCAA GACTCTTTGTTATTAATGGCTTAGCTAATCTGTTTCTTACAGATAGCAGGAAGTTGAGAGGGTTCGTGGAGAGAGAAATG CAGTAGCTAATAAAATGAAAGGAAAAATAGAACCATCTGAGCGCCAGAGATTAATTGAAGAAGGTGCTCTTGGCACAGAC CTTCACTCATCATGCTTCGCTTTGGTTTTCTTTGATTAAATTTCTTAAAACTGTCACATTTTGTCTGCAGGGAAGAAATT GAAAGAGGGGCTTATTGCTTTGGAAGAAGACCTGGTGAAGCTTAAAGATGAGCTTCAACAGGAAGCGCAGTCTATACCAA ATATTACTCATCCTGATGTTCCGATAGGAGGGGAGGATTGTTCCACTATAATAAAGATGGTATATCAATTATCACAACTC TCTTCATTTTTTCTTCTAGAGTAAAAAGGTTGGTTGTTGGTCTTGTTCAGGCATCAATTTCTTTTGCTTAAATATTAATG TATCATGTGACTTTTTAGGTTGGCAGCGCTCCCAAATTTAGCTTTCCTGTCAAAGATCATCTCCAACTGGGAAAGGATCT TGATCTCTTTGATTTTGATGCTGCTGCAGAGGTATGCTATGATTAATTTAAGGCATTAAAGAATCATGTATTTGAAGCTT GGCTATTATTAGTGTCATTTTGAGGTGTAGGTTAATAGTATATGGTGTTAAAGGTTAATAGTCATTTTTATCCTGACTCG GTGTTGGAATTTATTTACTTAGCACTCTTATTATTTTCTTGGAAGTGAAGCGGGCCTTGGAGGTGTCATCTCCTCTTACA TGAAAGTAACCAAGGATGATTTGTATATGTCATTAGATTGAAGAATTCTTGAACTTTGCAATTATGAAATGCTTCATGTC TGTCGCTGTTCTTGTGTCCGATATTGTTGGAAGACCTCATTCTAAGTGCTAACTTGGTAGTAGCTTGTTCCTTTTTTTTT TAAATCATGTTGTCATGTTGACGTTTGGATCTTAAAAGGAGCAAGGATATAATTGGCATGTGACTGTACTTTCTCAGATG AATCTAACATGCTGCTTCACAGGTTAGTGGGTCAAAGTTCTACTACCTGAAAAATGAAGCGGTTTTGTTAGAGATGGCTC TTTTAAATTGGACACTCTCAGAAGTGATGAAAAGAGGCTTTACTCCTATAACAACTCCTGAAATTGTACGGTCCTCTGTT GTTGAAAAATGTGGGTTCCAACCTCGTGCGGATAATACCCAGGTTTGTGAGTGAATATTTATTTGGCATTTAATTCTTTA TCACTATGTGCTATTAAACTATTCTTCGGCTTCATGGTCATGGACATAGGATAGTAAGATACATAGCTGATGACAAACAT GTGGCAACCATTTTAGCTGAGACAGTTTACTTGCTGTCAGAAGAACATTTATCTTCTAGAGTTCTAGTCCTTCCATGAGT TCCATCTTCTTTTATATTTTTCAAGCCATGAAACTTATATATCGGTTAGTCTTGTACTAAGGCCCAACCTTGTTTCATGA TGCAAAGTATTGCAACATCATCAAGTTTTCCCTATAAGTCCTTCAGTTTCATGTTTTTTAGTTTGATGATTGAAGTTCAT AGCTTCTGTTGATGTTTCATTATTTCATACCAACATCAAACAGATTTATTCCATCGAAGACAGTGACCAATGCCTTATTG GCACTGCAGAGATTCCTGTTGGGGGCCTTCATATGGATTCTATTCTTGCTGACTCATTGTTACCCTTAAAATATGTGGCA TTTTCTCATTGTTTCCGTACCGAGGCAGGTGCTGCTGGCGCTGCAACAAGGTAATTAATTAACTGTAGAGCTTATTTTTT CCTTTCATGTCCCTAGCTATTGATTTGACCAGAGATTAAATCGTTAGTAATATCCAAACTTGTAATATAGGGGGGAGTTT AAACCCTTAAAATACTGCTTTGTTGCATATGTTGGCTAAATTTATTTAACCAGTTGAAGTTCCTATTTTCAAGTCCCATC CTACATGCCAATTTTAATGTTCATAACTATTTAGTTCTTCCAAATTTTTTGATATTGATCAATACTGAACAGGGGTCTTT ATCGAGTTCACCAGTTCAGCAAGGTTGAAATGTTTGTTTTTTGCCGTCCGGAAGAGAGTGAATATTATCATCAAGAGCTC ATTAAAATTGAAGAAGACATCTTCTCATCCCTTGGGTTACATTTTAAGTGAGACTTATTACTTTGTACATAGTACATCCT TCCTTCATAATTTAACATGATCTCATTACTGAGTTTATTATAACTGTGGGTTTTTCTGCAGAATTTTGGATATGGCTTCT GAAGATTTAGGTGCACCCGCTTATCGTAAATCCGATGTGGAGGCATGGATGCCAGGTTTAGAACGGTTTGGTGAGGTACT GCAACAACTCTTTCCCTTTCTTTCTCTTGAGACACATCTGCAAGCTTTGTTTGCTATGCCCCTTGGGCTGAGATTACTGC TTTCTCAATGTGATTATTAAATCATCTAAATGAATCACTGTGGCTGCATGCACTAGGGGAACTTCATTTGGTTTTTGTAA CTTGTTAATTGTGATTACTGAAGCTTAACCATCCTTGAAAATCCAACTTACTGCACTGTTATTCCCTTGCAAAAGTCATG TGGCTTTCAATGTATAGCATGTTTAAAGCAGTTTAATTTCTCCTAGAGAAGCTACTCATAGAACTTAATTAAAAAATTAC GGCGAAGCCAAAATTATGGTGGACAGAAGGAAAAGCTAAATGAAGTTGCTTCTGTCCACGACCCTTCACTGTGATTTTCT ATTGTGTATTTAAACACGCACGAAGGATTTCTAAACATGCTTTGCTGAGCCCTTATTTCCTTGTATGGTTGTTATTATGA CAGATCTCAAGCGCATCAAATTGCACAGACTATCAGAGCCGTCGGTTGGGAATCCGGTATCGTCCATCAGAAGCACTTGC ACCTGGTCCAAAAAAATCTAAAGGCAACCTTGCTCCACCACAGTTTGTCCACACATTAAATGCAACAGCATGTGCAGTAC CGCGGATGATTATATGCTTACTTGAGAATTACCAACAAGAAGATGGGTCTGTTCTTATCCCTGAGCCCTTGAGGCCTTTC ATGGGGGGCCTTAACATTATAGCTAGAAAATCATAATATAATATATCATCATAACATTTGTTTGCATTTGATGGATGCTG TTGCGGCCTTAGATTGTGGTAATAGATGAGTTGAAGCAATTTCATTTGAATTAAAGTGGCAAAGATTAAGTAGTTATTTC TTCAAATAATAGGCTTTTCTTTTCATTGTGTAATAGCCACACGTATATAGAAAATACTCAAAATAGTGCATTTTTACCTT TTTATAAGTACTAATTTTAAGTTATAAAACTAAGGGTGTTTTTTTATTTTTGACACAGTTTGAGTGTGCTTCTAGTCAAT CCACGTCTCTTTTGTCATTAGAGTGATTTTTTTTTTGCCAAACAAGAATTATTTATTGTTATCCTGTTTTGACTTGAACA TGTATAGCTTCTGAGCTCAGAAATGAACTAAAACTAGTGAGTAGTTACACAATAGGAATGAAGAAATTACTTGCATCCAT TGGAATCCCTTTGTAAAAAGGGGAATCATTAATAGCTAACGAATTTGGGTTGAGTTCTCAAACACAAGTACTCAACAAAA GGAAGCCTTAAAGTATGGTGGAAATTTTGCTTAAACCGGTCATGACCAAGAAACTACTGGTTTTGTTTGGTGAGTATGGA ATATCCAACTTATCAATTTATCTGACAATCTTCTAGAGGCCCATGTAGGATTTAATAACTGGGCTGGAGCAATGAACATA TTTGAAGCGGCTCATTTTATCATTGAGAAACCCATGTATGAACAATCCATTGACCAAAAACAAAAGGTCTATCTTTTTAA GAAATAACCATTGTTTCTGGAAAAAACAAGGAAGTGAAGAGCTGTGTATGTCATAGGATAGGATTCATCAAAAAGTGAGT TCTGATAATGTAATTTACAAACAGAAAAAAAAAAACAATAACATGTGTGAATGCTCCTGGCCCAATCCAAAAGATCTATT TTATGTTGTCTAAGATCTATATAAATGTGTAACGTTCACTCAGTGATGATTGAATCCCGCTCACTTACTATGTACATAAA TAATCCAGCGTTTCTTCTAATAAATCCTAAAATTAGTCCTTCAAAGCTGTGTCACCACATTAATCCTTATAAAAAATCTG ATCACCAAATTAATCCCTGAAAAATTCTAATGTTACCATGAAACTCATTTTTCACAATCATAATATAGTGATATTTTAGA TATTTGAAGGAATAACCTGGTGATAAAATGGCTCAAGTGTCATATGTGAAATTTTCCAGGGACTAAATTGGTGACCAAAA GTTATAGAAGACTAATGTGACAAGTGTAACTTTTGGTGGACTAACTTAGCTCACTCTCTTTCTCCTTTTCTATTGCATTT CATTTTTCTTCCTTGTCGATATATACAGTTTGCCACCATGCCTTTTAAAACATTGGCAAAAGGATGATGCATGTGTTTAT GTAACATGAGAAGCGTTTATAGGTGGTGTTTCTGTCCGACATAAACAATCAGGTAAAGGATTTGCATAAAATGTTTCTTC TGACCGAAACCTCTCCAAACCCCTTGTTCCTGAAATGGGCCCTTTTCTCTTCCTCAACAACCCAAGCCTGCCAACACAAC AAAAAAATAAAAAAAAACATCAAATAAATAAAGGTTTTTCTGTTTGGTCAAATTGAGAATGATGCAAAAACTGTCATCTA GTGTATGTAATAGAAGAAAACATGTTTTAAATCAAGTCATGTTGCAAGCTGAAGTCAAATAGATAGAACTAGCCTAGGCT GTGAAGCTAGTTAGATTGAATTTATTCAATGAAAATGAAAATCCTTTGATCACTAAAAGCCTAAAAAGAAGAAATATCAA GGAATGATGATGATAATATAATGGCATGTTGAAAAAAGATCAAGCAATCAAAATGAAAGATGCAGATAAAAACATATATG GAACTTCAAGTTATCTAACTGAAGAAAAATACATATTAGCATACATATCTAGCAACCATAAAATTAATTAACATATACAC TAATGCTTCGCCAATCACAAACCGTGTTCTATGGAGATCATTAATTTTATCAGACAGTTTTTTCCCCTCAGTCATTGATC CAACTGCCAGTTTATCAAATAGGCGAACAAGGGTTTTCCTGATCAAAAAAAGCGAGGACAGACAAAAACTCTGTCATGAT GAACTGGGAAGAATAGCATACATAAATTTAAAAGATAAATATAACTTTTTCTGATTAAAGAGAGAGCCTTACCTGTCTGG AGATATTGTTCTTCCCCTCCCGAGATAACGACGATGGCCTTCAACGGCCCGTGCCATGTTTCCAGGGTAAGAATGCACAA AGACATCACTCTCGACAGATACAATATAGTCAAGAGCAGCCATTTGAGATGCATGCTTAGAAAAAGGTTCAAGCTCCTCA ATGGATGCCAAGTTTTCCTAATAATGATTGATTACATTATTTTCAAATGTCAGTAGTTCTTGAAATAACATAAAAAGCTT AAAAAACTTTGCTTCAACCCAAGTTATTCACTTTATGATACTATGACATTTTTGTTACTTTAGAAATTTGCTACTGGTAA TAATATAGACTTCTTGCCTTAAACTCAGCATCCGCCATAGAAACCCTTCATAGAATATTCGACTGCAACTAAATGAGTTA ACAGATACAGGAGCTGGATCAAAAGCAAAATGCCACTAGCCAAATCTCTGTGGTTAGAGAATGGCTTATGATGTAAGCTC CATATGCACTTAAATAATGGATGAATT
CDS sequence (LotjaGi1g1v0339700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTACACGGTTGCCTCAACATCACAACCTTACAAAGTTTCAAGCTCGGTGCATTTCGCACTTACCCATCTTCACA CCAAAGAACCAAAGCTCCATTCCTTTATTCGCAGAAACCATCATTGCCACGACCCATCAAAGCTCTCTCCACCTCCGCCG CCGCCGTTGAAACATCCCCGTCAACAACTGAGACTTCCGACGAAAAGGGTGGGAAGCCTCAATGGAAAGCAACAATAGAC TTCAAGTGGATAAAGGATAACAAGGAAGCTGTTGCTGCCAATATAAGGAACCGCAACTCTCATGCTAATTTGGACCTTGT GCTCCACCTGTATGACAGCATGTTTCACCTTCAGAAGGAAGTTGAGAGGGTTCGTGGAGAGAGAAATGCAGTAGCTAATA AAATGAAAGGAAAAATAGAACCATCTGAGCGCCAGAGATTAATTGAAGAAGGGAAGAAATTGAAAGAGGGGCTTATTGCT TTGGAAGAAGACCTGGTGAAGCTTAAAGATGAGCTTCAACAGGAAGCGCAGTCTATACCAAATATTACTCATCCTGATGT TCCGATAGGAGGGGAGGATTGTTCCACTATAATAAAGATGGTTGGCAGCGCTCCCAAATTTAGCTTTCCTGTCAAAGATC ATCTCCAACTGGGAAAGGATCTTGATCTCTTTGATTTTGATGCTGCTGCAGAGGTTAGTGGGTCAAAGTTCTACTACCTG AAAAATGAAGCGGTTTTGTTAGAGATGGCTCTTTTAAATTGGACACTCTCAGAAGTGATGAAAAGAGGCTTTACTCCTAT AACAACTCCTGAAATTGTACGGTCCTCTGTTGTTGAAAAATGTGGGTTCCAACCTCGTGCGGATAATACCCAGATTTATT CCATCGAAGACAGTGACCAATGCCTTATTGGCACTGCAGAGATTCCTGTTGGGGGCCTTCATATGGATTCTATTCTTGCT GACTCATTGTTACCCTTAAAATATGTGGCATTTTCTCATTGTTTCCGTACCGAGGCAGGTGCTGCTGGCGCTGCAACAAG GGGTCTTTATCGAGTTCACCAGTTCAGCAAGGTTGAAATGTTTGTTTTTTGCCGTCCGGAAGAGAGTGAATATTATCATC AAGAGCTCATTAAAATTGAAGAAGACATCTTCTCATCCCTTGGGTTACATTTTAAAATTTTGGATATGGCTTCTGAAGAT TTAGGTGCACCCGCTTATCGTAAATCCGATGTGGAGGCATGGATGCCAGGTTTAGAACGGTTTGGTGAGATCTCAAGCGC ATCAAATTGCACAGACTATCAGAGCCGTCGGTTGGGAATCCGGTATCGTCCATCAGAAGCACTTGCACCTGGTCCAAAAA AATCTAAAGGCAACCTTGCTCCACCACAGTTTGTCCACACATTAAATGCAACAGCATGTGCAGTACCGCGGATGATTATA TGCTTACTTGAGAATTACCAACAAGAAGATGGGTCTGTTCTTATCCCTGAGCCCTTGAGGCCTTTCATGGGGGGCCTTAA CATTATAGCTAGAAAATCATAA
Protein sequence (LotjaGi1g1v0339700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLHGCLNITTLQSFKLGAFRTYPSSHQRTKAPFLYSQKPSLPRPIKALSTSAAAVETSPSTTETSDEKGGKPQWKATID FKWIKDNKEAVAANIRNRNSHANLDLVLHLYDSMFHLQKEVERVRGERNAVANKMKGKIEPSERQRLIEEGKKLKEGLIA LEEDLVKLKDELQQEAQSIPNITHPDVPIGGEDCSTIIKMVGSAPKFSFPVKDHLQLGKDLDLFDFDAAAEVSGSKFYYL KNEAVLLEMALLNWTLSEVMKRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSIEDSDQCLIGTAEIPVGGLHMDSILA DSLLPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVFCRPEESEYYHQELIKIEEDIFSSLGLHFKILDMASED LGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPSEALAPGPKKSKGNLAPPQFVHTLNATACAVPRMII CLLENYQQEDGSVLIPEPLRPFMGGLNIIARKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 47 | 73 | 27 | - | – | |
| MobiDBLite | 52 | 68 | 17 | - | – | |
| PANTHER | 53 | 511 | 459 | 8.1E-222 | – | |
| PANTHER | 53 | 511 | 459 | 8.1E-222 | ||
| PIRSF | 78 | 512 | 435 | 1.4E-137 | ||
| TIGRFAM | 79 | 503 | 425 | 1.5E-129 | ||
| Gene3D | 79 | 180 | 102 | 2.4E-19 | ||
| SUPERFAMILY | 79 | 188 | 110 | 1.05E-20 | ||
| Pfam | 79 | 182 | 104 | 4.5E-20 | ||
| Coils | 144 | 178 | 35 | - | – | |
| Gene3D | 181 | 513 | 333 | 3.9E-139 | – | |
| SUPERFAMILY | 193 | 504 | 312 | 2.88E-78 | – | |
| CDD | 197 | 503 | 307 | 9.22956E-167 | ||
| ProSiteProfiles | 213 | 496 | 284 | 21.701 | ||
| Pfam | 297 | 486 | 190 | 3.0E-27 | ||
| PRINTS | 338 | 350 | 13 | 4.9E-22 | ||
| PRINTS | 350 | 363 | 14 | 4.9E-22 | ||
| PRINTS | 390 | 403 | 14 | 4.9E-22 | ||
| PRINTS | 407 | 423 | 17 | 4.9E-22 | ||
| PRINTS | 425 | 441 | 17 | 4.9E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Serine-tRNA ligase activity | Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Seryl-tRNA aminoacylation | The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. The seryl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a serine-accetping tRNA. |
Expression pattern of LotjaGi1g1v0339700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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