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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1494610 |
| Transcript ID | Lj5g3v1494610.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 433 | 433 | 1.60E-184 | ||
| TIGRFAM | 1 | 424 | 424 | 9.40E-148 | ||
| PANTHER | 1 | 450 | 450 | 2.70E-288 | ||
| SUPERFAMILY | 1 | 117 | 117 | 7.32E-24 | ||
| Gene3D | 1 | 108 | 108 | 2.30E-18 | ||
| Pfam | 1 | 112 | 112 | 9.80E-29 | ||
| PANTHER | 1 | 450 | 450 | 2.70E-288 | – | |
| Coils | 49 | 69 | 21 | – | – | |
| Coils | 73 | 93 | 21 | – | – | |
| Gene3D | 110 | 427 | 318 | 5.10E-135 | – | |
| SUPERFAMILY | 121 | 431 | 311 | 2.05E-87 | – | |
| CDD | 124 | 424 | 301 | 0 | ||
| ProSiteProfiles | 142 | 417 | 276 | 22.101 | ||
| Pfam | 221 | 408 | 188 | 1.10E-35 | ||
| PRINTS | 268 | 280 | 13 | 7.90E-33 | ||
| PRINTS | 280 | 293 | 14 | 7.90E-33 | ||
| PRINTS | 322 | 335 | 14 | 7.90E-33 | ||
| PRINTS | 339 | 355 | 17 | 7.90E-33 | ||
| PRINTS | 357 | 373 | 17 | 7.90E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Serine-tRNA ligase activity | Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Seryl-tRNA aminoacylation | The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. The seryl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a serine-accetping tRNA. |
Expression pattern of Lj5g3v1494610.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1494610.2, powered by CORGI.
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