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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0220300 |
| Transcript ID | LotjaGi5g1v0220300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine--tRNA ligase; TAIR: AT5G27470.1 seryl-tRNA synthetase / serine-tRNA ligase; Swiss-Prot: sp|O81983|SYS_HELAN Serine--tRNA ligase; TrEMBL-Plants: tr|A0A0B2Q4B0|A0A0B2Q4B0_GLYSO Serine--tRNA ligase; Found in the gene: LotjaGi5g1v0220300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52678763..52684698) extracted from Lotus japonicus Gifu genome v1.2.
CTATGAACTATACTGTTTAGGGTTTGTGGTTTAGAGTTCACGGGCCAAACCGTCATAAAGTCAATATCCATTTTCAGCCG TTGATTTCAATTTACAATGGATGGGGGTTTCAGATTAGCAAAACTGACGAAAAATTGCCATAACTAGAGCCAGAAAGTCA AAAACAAAACGCAAAACCCTCTTCTTACTTAGCCACACTCTCTTGCTCGCTCTCACTCAACCCTTTTTCACCCTTGACGG CGGCGCGTGAAGATAACGAACGATGTTGGATATCAACCTGTTCCGGGAAGAGAAGGGCCACAACCCTGAAATCATCCGCG AATCTCAACGCCGCCGTTTCGCCTCCGTCGAGGTCGTCGACGAGGTCATCGATCTCGACAAAGAATGGCGAAAGCGTGCG CTCTCTCACAATCTCTCTTCAGTTCTACAATGTCTGTTATCAGCGTAACTGATTTTGATGTATTGATTTTCAGGTCAATT CGAGTTGGAGAATCTGCGCAGAGAGTTCAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGTGCTGGTGAAGATGCAA CCAAGTTGATTAGTGAATCAGAGGAGACTAAGAAATCGATAGCGGAGAAGGAGGCTGAGGTTCGGGACACGCTGAAGCTT CTGAATTCCAAATTGGAAACGATTGGGAACCTCGTCCATGACTCGGTTCCTATCAGCAATGATGAGGTTTTGTTCTGTTT CTGGTTTCTTATTTTCTGATGATGATGATGATGCTTGTGTTAGAATTAGAAATCATGGGGGTTTTATTTGTGTGCTGCTT TATTAGGCTAACAATGCTGTGGTTAGATCGTGGGGCGAGAAAAGAGAGGAGCCTAAACTGAAGAATCATGTGGATCTGGT TGAGCTTCTTGAGATAGCAGATACAAAGAAAGGTTTTAATTGTTGAATCCAGTTTTTTCAATTGATGATTTGTTTGTGAT TTCTGCGTCCTGACCTGAACCATTTCATTTGTATGATTGACGTAGCTATTTCACTATCACATGGTTTGTGTAGCTTTATT CTGCCACTGTCTCGAATCTCAATTGTAGGCACTATGGCTTATTTTTTTATGTGTAGTTTCGTTTTGCTTGTACATCAAAA TCTAATGTGGATAAGTACAAGTTTCTTCACTTTCATTGTGTGTCCTCCTTTTCACTGTATTTGTCATCTACTGAAGCATT TATGCTAATCACCAATAAGTGGGTCGAATGTTGCTGCATTTTAACTAGGCTAGCCGGGCTTTTCAATACTCTGCATTGTG GTCATTTTTTCTCTGAATGTATCCTAATCTTTAATGTCATCTTGCTTCATACATAATAGGAGCTGATGTTGCTGGAGGTA GAGGTTTCTATCTCAAAGGAGATGGTGTTCGTCTTAATCAAGCTATGATCAACTTTGGGCTTGATTTTATGGAGAAAAGG GGATATACCTTGTTACACACTCCTTTCTTCATGAGAAAAGAAATTATGTCTAAGTGTGCTCAGTTAGCCCAATTTGATGA AGAACTTTATAAGGTAAAGTTCTTAAGTCGGTTCCATTATTTGTCTGGTATTTTGTTTATGATTTGTTATGTTAATGTTA GGACATATTGGTGATGCATCTTTTATACTCTTTGACAATACAAATATATGTTCTTTCTTGAGGAATATGCTTAATATTGA TATTGAAAAAATGGTATTTTTTTCATTCTATTTTCCATTTTAAGAGATTTGTTACGGAAGTAGTGAAAACAATAATTTTT TTTCCTAAAAATAATAACAAACCAAAGGCAACCTTAATATTTTCCTCTGAGCTTATCTAAGGAGCTATTATGTTAGGTAA CTGGTGAAGGAGATGACAAATATCTGATTGCCACAGCAGAGCAACCACTTTGTGCCTATCATTTGGATGATTGGATCCAC CCTTCCCAGCTACCCATAAGGTAATTTGAATTTGGTGATATATGTTAGTGTTGGAACTTGAAAGACTGTTAATTTTAACA CTGGTAATATACTTTCTATAGATATGCTGGATATTCATCTTGCTTCCGTAAAGAAGCTGGATCTCATGGTCGAGATACCC TAGGAATTTTCCGAGTTCACCAATTTGAGAAAGTGGAGCAGTTTTGCCTTACTAGCCCCAATGACAATGATTCATGGGAT ATGCACGAGGAAATGCTAAAGAACTCCGAGGACTTCTACAAGGAGGTATGAAGCTGTTCCTCATTAAACAACTAGAATAT GTTTAAAGGCGTCATCTATATCAGTCAAAATTCCATATAAATAATATAATTTTTGAATGATTACTGAATCCGGGTACCAC TAAATAAAGGCAAATGATGTCTTTGACATGCTGAACATATCTAACCAGGGGATGTTTTGTGCATACCTATGTCTTCCTAA TTTTTTATATCTGTTTTTTCTGCTTTTGATTATGTCTGTAGTACTTACATGTTGGAATTATCCCATTTGATTTTTTTTTT GTAGATGTTATCTTTGTATATGGATCAATCTCTAAGTTGTTTCCAACCTAAACTGATTTCTTTCTTTGCCATCTTTCTAT TTTTCTTTCTGATGTAATTAAACTTTTATTGGCTGCAGTTAAACATTCCATATCGAGTTGTTTCCATTGTATCTGGTGCT CTGAATGATGCTGCGGCAAAGAAGTATGATCTAGAAGCATGGTTTCCAGCTTCTCAAGCTTACAGAGAGCTTGTGTCCTG TTCAAACTGCACAGACTATCAGGCCAGAAGGCTAGAAATTCGATATGGACAGAGGAAGGTTAGTTATGCTCAACTTCATC ATATTGATGAATTTACTAGTATTATTCAATAGCTTGTGAATGAAAAAGTTAATTTATATTAAAAATGAGATTGTGCCTTA TGCATGTCAAAATCTCGCAGTCTGAATTTATGAAGTCCTTTCTACTCTGAAATTTCCAAGTTCCTTTCTTCTCCATTAGT ATAGTCTGTCGTTCAAATTCTATTAAGCAGACAATTGGATTTTATCTTTGTTAAACATTTTGAGAATAATCGCAAGAGAT GATGGTGCTTACTTATGTTAAGGGGCCTAAGATATTCAGTGGTTATCAAAGTTTGTTGTTGGGATTTTGTCGTGAGGAAT ATTTTCTTTTGGCTTTGACTATTTTCATCCCTATACGTGAATTTACATTCATACATTAATGTGAATTTGCATGTTTTACT GTTGCAGAGCAATGAGCAGTTGAAGCAGTATGTTCACTTGTTGAACTCTACACTCACGGCTACTGAGAGGACCATTTGCT GCATACTAGAGAACAACCAGAAGGATGACGGAGTGGAGATTCCAGAAGCCCTTAGGCCGTACATGGGTGGAAAGTCTTTC ATACCTTTCAAGAACCAACCTGAAGCAAAAGGGAAGAAATCGAAGTAATTGCATTACTTTTAGTCTGAATGATATTTATG AAGAGTTAGTTCAAAATTGTAGTTTATGACACTGTTAATCTGTCCTCAACCCCTCCCTGAATGCCTAAATAGTAAATTAT CTTGAGGAGCATGCACGGATTTTTGGTAACACACTTGGCATATTCTGTAACTCATTAATCTATAAACCTTGTACTTTTTG CGGTGTGTTTTGATGATTTTATTCATTGTGAAAGGTTAACATTGATCAGATGTTATTTTGTTAAATGGGGCGAAACACAT ATCTGCTACTTATAAATGTCAAAATGTGTTTACTTTCATTGTTTTCGTACAAGGTTTAGGTGACATGAGGTTGTTGTTTG GTTCGTTATACATCTTTTAGGGGGTTAACTTGTATTACGGGGATAATTTGTTCAGCGCAGTAGACACCTATAAAAATATG CAATTTCGAAGTTAAATTTGGGTGTTATTCAACTGCAAGGGGATTCTGGTTCATTCATGCATGGGATTGGAGTTCTGAAG TCTGGTTTCTCTCTTGCAGGGCATTGAAACATGTTCAATTTAATCCTGCTGCTAATATTCTAACTTCAATTACAAAATTC ATTGGAAAGAGCAATGTCATCCGCAAAATTGGGACTAGAATATTCAATGTATTGTAATAGAGAGGGTTGATGGGGTTTTA TTTGGTAGCCAACCTTCTAGCTGTGGTTTCTTACTGGGTCACTTGCAAATGATATGTTTTACAACTATGATGATTTATTC TACTCGCATGTTTTTTATTCTGTATTCTGCAGCCAAAGCGATTATTTTAAAAATAGCTTTGATCTGCATGGTTCTTCCTT GGCTCATTCGTTTCCGAACTTGTAGCTAATCAAGTCTTTATCACAAACATGAGAATATATATCATATTTGATACCAAGGG CATTTCGAACTTCCAATCCCTTACCAACTCTTTTAATTTGAACGTGAATAATGTTTTGTGGTAGCGTGATATTTAGGGTA TGTAGTTATCCAATCTAGATGCAAATTGTTTTATAAAGCTTTTGGTTGAGTATTATTTGTCAATATCAGAATTGATTCTC CACTGTCAAAATTAGTTTTATGGTGTTTAAACGTTTCATTTGATAATCGATTTTAGCTTTAAAATCAATTTTGGAGCGAC ACTAATACTAGGCTAATAGCTTGTGTGGTGAACATATTAATAGAGTTTTCACAACATGTCTCTACACAACTTTTCAACAC TTTTGTGATAATTTTAGAGCCAAAATAATATGTAACAATGCTGGTTCAAAACTGATACAATCAATGCTAATCAAATTGAG TTGAACACAACTTTTCTGTTGAAGAAGTAAGTAGAGTAGCTTATGGAGGATGGTCGCGATCACTCCACAATGGTCAAGTC ATTGGAGAGGATGTAGTCTGTTATAGAGTCACATGGAGAGACACTATCAAGTAAGTGGCTTTTGGTAAAAAAACATAGAA TTACTCTCATACCAAATATATGAACTAGGAGAAGTATGAAGATACCCTTCATCATGGTATTGCAAGTATGTTTCTGAATA TTACAAGGCATGTAGGCATATAGCTGTGTCAACAGTATAAAACACAAGCCATGGAGATAAAATTCCATCACCAGCACAGA ATTTGAATACTTTGCAGCACACTTTTGTAACTTCAATGTAACTTGAGCAACCTATTTTTTTAACTTCACTAGCTAAAGGA TCTGAAAACTGATGTACACACCGTCCCTCATGAATGTTTGGTAGTAAAAAGATAAAGCAATTTACATGGGTGCTTAGAAC TTAAAAAAAGTTACATGGCAAAAGCGCAAAACAATAGAACTGACAGTACTTGTTCAACTTGAACTGTGATCAAGAAAACT CATCACTCATCCCATGCAAATCAGTGTTTGTATGCAGAAGCAGAACAGCTCTTGCAACTTGCAAGGACAGAGAACTCAGA CAATTGAACTACCTACCTGTTGTGTAAAGGGTCAGGAGAGGAAGGTACTTCTCTCTTAACTGCAGCGTAAGCTCCTCGAG ATGTTCCATGGCTAAAGCTTTTCCTCCATGCTGGAAATTTATGTACATGTTCCACTTCTTTTCCATATTCAGCTCCTAAT ACTCCATGGTTTAAACAATAGCTGCTAAATAATATCACTAAGAAGAGTACTAAGAGATACCCCACTTGAGTCTTTGAAAT TGACATAACTTCTCCTACAATCTTCAATGATCATTATTTTTCCTCTTTCACCTTCTCCGAGGCAAAGCTGGGATATAATA CAGATCAAGATTGAGATAGCTCTTGATATCTGGATTTATAACAGTAGCTATGCAGCACAGACCAATAAAAGAAGAAATGT GAGAACAAGGATTGACGGTTATGAATTTGCTTGTCATAGACTAGGGAAAACTATAGGTCATTAGGAGAAGGGTCCAGGAA GAGTAGTAAACAAATGGTTAACCCCTTGTCCTCATTCAAATCAATAATTGACATGTGAAACATTGTGGCCATGATGAAAA TGTACATGTTCCTATC
CDS sequence (LotjaGi5g1v0220300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGATATCAACCTGTTCCGGGAAGAGAAGGGCCACAACCCTGAAATCATCCGCGAATCTCAACGCCGCCGTTTCGC CTCCGTCGAGGTCGTCGACGAGGTCATCGATCTCGACAAAGAATGGCGAAAGCGTCAATTCGAGTTGGAGAATCTGCGCA GAGAGTTCAACAAGATCAACAAGGAAGTCTCCAAACTCAAGCGTGCTGGTGAAGATGCAACCAAGTTGATTAGTGAATCA GAGGAGACTAAGAAATCGATAGCGGAGAAGGAGGCTGAGGTTCGGGACACGCTGAAGCTTCTGAATTCCAAATTGGAAAC GATTGGGAACCTCGTCCATGACTCGGTTCCTATCAGCAATGATGAGGCTAACAATGCTGTGGTTAGATCGTGGGGCGAGA AAAGAGAGGAGCCTAAACTGAAGAATCATGTGGATCTGGTTGAGCTTCTTGAGATAGCAGATACAAAGAAAGGAGCTGAT GTTGCTGGAGGTAGAGGTTTCTATCTCAAAGGAGATGGTGTTCGTCTTAATCAAGCTATGATCAACTTTGGGCTTGATTT TATGGAGAAAAGGGGATATACCTTGTTACACACTCCTTTCTTCATGAGAAAAGAAATTATGTCTAAGTGTGCTCAGTTAG CCCAATTTGATGAAGAACTTTATAAGGTAACTGGTGAAGGAGATGACAAATATCTGATTGCCACAGCAGAGCAACCACTT TGTGCCTATCATTTGGATGATTGGATCCACCCTTCCCAGCTACCCATAAGATATGCTGGATATTCATCTTGCTTCCGTAA AGAAGCTGGATCTCATGGTCGAGATACCCTAGGAATTTTCCGAGTTCACCAATTTGAGAAAGTGGAGCAGTTTTGCCTTA CTAGCCCCAATGACAATGATTCATGGGATATGCACGAGGAAATGCTAAAGAACTCCGAGGACTTCTACAAGGAGTTAAAC ATTCCATATCGAGTTGTTTCCATTGTATCTGGTGCTCTGAATGATGCTGCGGCAAAGAAGTATGATCTAGAAGCATGGTT TCCAGCTTCTCAAGCTTACAGAGAGCTTGTGTCCTGTTCAAACTGCACAGACTATCAGGCCAGAAGGCTAGAAATTCGAT ATGGACAGAGGAAGAGCAATGAGCAGTTGAAGCAGTATGTTCACTTGTTGAACTCTACACTCACGGCTACTGAGAGGACC ATTTGCTGCATACTAGAGAACAACCAGAAGGATGACGGAGTGGAGATTCCAGAAGCCCTTAGGCCGTACATGGGTGGAAA GTCTTTCATACCTTTCAAGAACCAACCTGAAGCAAAAGGGAAGAAATCGAAGTAA
Protein sequence (LotjaGi5g1v0220300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDINLFREEKGHNPEIIRESQRRRFASVEVVDEVIDLDKEWRKRQFELENLRREFNKINKEVSKLKRAGEDATKLISES EETKKSIAEKEAEVRDTLKLLNSKLETIGNLVHDSVPISNDEANNAVVRSWGEKREEPKLKNHVDLVELLEIADTKKGAD VAGGRGFYLKGDGVRLNQAMINFGLDFMEKRGYTLLHTPFFMRKEIMSKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL CAYHLDDWIHPSQLPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCLTSPNDNDSWDMHEEMLKNSEDFYKELN IPYRVVSIVSGALNDAAAKKYDLEAWFPASQAYRELVSCSNCTDYQARRLEIRYGQRKSNEQLKQYVHLLNSTLTATERT ICCILENNQKDDGVEIPEALRPYMGGKSFIPFKNQPEAKGKKSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 109 | 109 | 7.9E-37 | ||
| Pfam | 1 | 112 | 112 | 8.4E-29 | ||
| SUPERFAMILY | 1 | 117 | 117 | 4.5E-24 | ||
| PANTHER | 1 | 434 | 434 | 1.9E-230 | ||
| PANTHER | 1 | 434 | 434 | 1.9E-230 | – | |
| TIGRFAM | 1 | 424 | 424 | 2.9E-148 | ||
| PIRSF | 1 | 433 | 433 | 3.6E-185 | ||
| Coils | 49 | 69 | 21 | - | – | |
| Coils | 73 | 93 | 21 | - | – | |
| Gene3D | 110 | 444 | 335 | 4.0E-143 | – | |
| SUPERFAMILY | 121 | 431 | 311 | 1.66E-87 | – | |
| CDD | 124 | 424 | 301 | 0.0 | ||
| ProSiteProfiles | 142 | 417 | 276 | 22.101 | ||
| Pfam | 221 | 408 | 188 | 1.0E-35 | ||
| PRINTS | 268 | 280 | 13 | 5.8E-33 | ||
| PRINTS | 280 | 293 | 14 | 5.8E-33 | ||
| PRINTS | 322 | 335 | 14 | 5.8E-33 | ||
| PRINTS | 339 | 355 | 17 | 5.8E-33 | ||
| PRINTS | 357 | 373 | 17 | 5.8E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Serine-tRNA ligase activity | Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Seryl-tRNA aminoacylation | The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. The seryl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a serine-accetping tRNA. |
Expression pattern of LotjaGi5g1v0220300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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