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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0111900 |
| Transcript ID | LotjaGi3g1v0111900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13806182..13808728) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGGCGTCATCATTGAAAGAATCTCTTGTTCTTCAACTCCATGAGATTTCAGCTGTCAAGTTCGGGAACTTCAAGCT CAAGTCTGGCATCTCCTCGCCAATCTACATTGACCTCCGCCTCATTATATCTTACCCTTCCCTCCTCCACCAAATCTCTC AAACCCTGATTTCCTCTGTCTCTTCAACTTCCTTTGATGTTGTCTGTGGTGTCCCTTACACTGCCTTGCCCATTGCCACC TCTGTGTCTCTTGCTCAGAACATCCCTATGGTCATGCGTCGCAAGGAAGTCAAAGACTATGGCACTGCTAAAGCCATTGA AGGTGATTTTGAGCCTGGCCAAAGTTGCTTGATCATTGAGGATTTGGTTACCAGTGGCACATCGGTTTTGGAAACAGCTG CGCCGCTGCGTTCTGTAGGGTTGAAGATCACTGATGCTGTTGTCTTGATTGATAGAGAGCAAGGTGGGAGGGAAAATTTG GAGGAGAATGGCATCAAGCTGCATGCAATTATTAAATTGACTGAAATGGTGAAAATTTTGAAGGATCATGGGAAGCTTGA TGAGGAGATGGTAGGGGTTGTTACAAGATTCTTAGACGAGAATCGGAAGGTTGCTTCTGTGGCGAAGGTGGAGAAGCCAA CGACTAAGGCCAAAGCTTTGTCATTTGTAGAGAGGTCTAAGCTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATA ATGGCTGAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCCGCTGAATTGCTTGAAATCGCTGAGAAGGT GAGAACTTGGTAATTTTCTTGGTAAAATAAAATCTCCCATAGCAATGAGGAAATCATTTTTAGGGACAAATACTATTCTT TTCACATGGACTCAGCTAGCGAAGTATTCTTTTCATTTATTTTTTTAATTAGTCCATGGCATGTTGTGTTCTCTCTTGTA TACTTGAAAAGTCCTGTGTTCTCTGGCTTATTGTCACCAACTGGATTGTAATTAGAAGTTTGGCCATAACAATTAATTTT CTGTTAACTAATTTTGCTGGTTTTCTGTCAGGTTGGACCTGAGATATGTTTGCTGAAGACTCATGTGGATATTTTGCCAG ATTTCACTCCTGATTTTGGCTCCAAGCTTCTTTCGGTATAGTTCTACAAGAACCCCTGTTGTGTTCACATGTCTCTTTTT CTTTTGAGATATCAGAAGAAACTTTTCATTCCTGATAATACTAACACTAAAAGATTTCTAGCATTTATCAAAATGGAATG GTGATTTATATATGACTATGTATGCTTTATCCTATTGAAGATTGCAGAAAAGCATAACTTCTTAATCTTTGAGGATCGTA AATTTGCTGACATTGGTAACACAGTGACCATGCAATATGAAGGGTGAGACTTCGATCAACTATCTTGGATTCCTTTTCTA GTTGGATTCTTCTCATATGTTTCTGAATTCAATATGACATGTTTCTGTTCCATTTTCTGCAGAGGGATCTTTCATATATT GGACTGGGCTCACATTGTAAATGCTCACATAATCTCCGGCCCTGGAATTGTGGACGGACTGAAATTGAAGGTCTGAAAAG ATGGTCATTTTCAGTATATTATAACTACTATAGCGAGACTTTGATTGATAATCTAACATGTTTCTTGAATCATACTCAGG GTTTGCCTCGTGGGAGGGGTCTGTTGCTGCTTGCTGAAATGAGTTCAGCTGGTAACTTTGCCAAGGGAGATTATACCGCT GCTGCTGTGAAAATTGCTGAGGATCATTCTGATTTCGTAATTGGCTTTATCTCAGTCAATCCAGCATCATGGCCAGGGGC ACCCATAAATCCTTCTTTCATTCAGGCAACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTCTAGGGCAGCAATATA ACACTCCATATTCTGTAAGTTTTTTCTTGTTGGCATGCATCTTTTAGTCATATACTGAGTATAAATACAGGCACAAGTAT TTCACTGTTATCCATTATTCTTTCTTGGGTTGAAATGAACTTCTATGGATGAAAAAGGGTAAGGGTGAGGAGTGTGGCCC TCAAATTCCTGCATTGTCTTTAAGATTAAACGGAATTAAAAGGAGTTGTTAATATACTGTCTTGGACTCTTGGTAATTTA GATAACATCTAATTATGATATGGGCGTTTAGAACTAGTACCTAAATTCAGTTCAGAACATGTTTGTGTTTAAACAATACT ATTGAGATATTTTGCTAGTTGGTTCTGTCTTATCTTTTCCTTAAGGATAGCTTGGTTGTGATATAGAGATTGTAGTTTTT CCATCCAACTCTTTCTGCTATCTGCAACTGGTTTCCTCATTTTTCTTACCCTATCTTTGAGCATAGTGATATTGACAATT CACAAAACGTTTTTGTAGGTCGTCCATGATAGGGGCAGTGACATTATCATCGTGGGACGTGGCATCATCAAAGCAGCAAA TCCTGCTGAGGCAGCTCATGAGTACCGGCTTCAAGGATGGAATGCATATTTGGCCAAATGTGCTTGA
CDS sequence (LotjaGi3g1v0111900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGCGTCATCATTGAAAGAATCTCTTGTTCTTCAACTCCATGAGATTTCAGCTGTCAAGTTCGGGAACTTCAAGCT CAAGTCTGGCATCTCCTCGCCAATCTACATTGACCTCCGCCTCATTATATCTTACCCTTCCCTCCTCCACCAAATCTCTC AAACCCTGATTTCCTCTGTCTCTTCAACTTCCTTTGATGTTGTCTGTGGTGTCCCTTACACTGCCTTGCCCATTGCCACC TCTGTGTCTCTTGCTCAGAACATCCCTATGGTCATGCGTCGCAAGGAAGTCAAAGACTATGGCACTGCTAAAGCCATTGA AGGTGATTTTGAGCCTGGCCAAAGTTGCTTGATCATTGAGGATTTGGTTACCAGTGGCACATCGGTTTTGGAAACAGCTG CGCCGCTGCGTTCTGTAGGGTTGAAGATCACTGATGCTGTTGTCTTGATTGATAGAGAGCAAGGTGGGAGGGAAAATTTG GAGGAGAATGGCATCAAGCTGCATGCAATTATTAAATTGACTGAAATGGTGAAAATTTTGAAGGATCATGGGAAGCTTGA TGAGGAGATGGTAGGGGTTGTTACAAGATTCTTAGACGAGAATCGGAAGGTTGCTTCTGTGGCGAAGGTGGAGAAGCCAA CGACTAAGGCCAAAGCTTTGTCATTTGTAGAGAGGTCTAAGCTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATA ATGGCTGAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCCGCTGAATTGCTTGAAATCGCTGAGAAGGT TGGACCTGAGATATGTTTGCTGAAGACTCATGTGGATATTTTGCCAGATTTCACTCCTGATTTTGGCTCCAAGCTTCTTT CGATTGCAGAAAAGCATAACTTCTTAATCTTTGAGGATCGTAAATTTGCTGACATTGGTAACACAGTGACCATGCAATAT GAAGGAGGGATCTTTCATATATTGGACTGGGCTCACATTGTAAATGCTCACATAATCTCCGGCCCTGGAATTGTGGACGG ACTGAAATTGAAGGGTTTGCCTCGTGGGAGGGGTCTGTTGCTGCTTGCTGAAATGAGTTCAGCTGGTAACTTTGCCAAGG GAGATTATACCGCTGCTGCTGTGAAAATTGCTGAGGATCATTCTGATTTCGTAATTGGCTTTATCTCAGTCAATCCAGCA TCATGGCCAGGGGCACCCATAAATCCTTCTTTCATTCAGGCAACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTCT AGGGCAGCAATATAACACTCCATATTCTGTCGTCCATGATAGGGGCAGTGACATTATCATCGTGGGACGTGGCATCATCA AAGCAGCAAATCCTGCTGAGGCAGCTCATGAGTACCGGCTTCAAGGATGGAATGCATATTTGGCCAAATGTGCTTGA
Protein sequence (LotjaGi3g1v0111900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASSLKESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLIISYPSLLHQISQTLISSVSSTSFDVVCGVPYTALPIAT SVSLAQNIPMVMRRKEVKDYGTAKAIEGDFEPGQSCLIIEDLVTSGTSVLETAAPLRSVGLKITDAVVLIDREQGGRENL EENGIKLHAIIKLTEMVKILKDHGKLDEEMVGVVTRFLDENRKVASVAKVEKPTTKAKALSFVERSKLSKNPTGKRLFEI MAEKESNLCLAADVGTAAELLEIAEKVGPEICLLKTHVDILPDFTPDFGSKLLSIAEKHNFLIFEDRKFADIGNTVTMQY EGGIFHILDWAHIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNFAKGDYTAAAVKIAEDHSDFVIGFISVNPA SWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSDIIIVGRGIIKAANPAEAAHEYRLQGWNAYLAKCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 213 | 213 | 8.3E-67 | ||
| Hamap | 1 | 231 | 231 | 22.783 | ||
| SUPERFAMILY | 7 | 193 | 187 | 1.85E-44 | ||
| PANTHER | 8 | 478 | 471 | 2.6E-296 | – | |
| PANTHER | 8 | 478 | 471 | 2.6E-296 | – | |
| TIGRFAM | 14 | 175 | 162 | 2.4E-42 | ||
| Pfam | 52 | 158 | 107 | 4.1E-11 | ||
| CDD | 65 | 172 | 108 | 1.5471E-18 | ||
| Gene3D | 216 | 478 | 263 | 7.1E-93 | ||
| SUPERFAMILY | 220 | 474 | 255 | 4.71E-55 | ||
| Pfam | 246 | 465 | 220 | 3.8E-74 | ||
| SMART | 247 | 465 | 219 | 2.0E-31 | ||
| TIGRFAM | 248 | 466 | 219 | 1.3E-52 | ||
| CDD | 248 | 465 | 218 | 2.34613E-48 | – | |
| ProSitePatterns | 303 | 316 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Orotate phosphoribosyltransferase activity | Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate. | ||
| Molecular function | Orotidine-5'-phosphate decarboxylase activity | Catalysis of the reaction: H(+) + orotidine 5'-phosphate = CO(2) + UMP. | ||
| Biological process | 'de novo' pyrimidine nucleobase biosynthetic process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. | ||
| Biological process | Pyrimidine nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | 'de novo' UMP biosynthetic process | The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen. |
Expression pattern of LotjaGi3g1v0111900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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