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Lj0g3v0332949.1

Overview

Field Value
Gene ID Lj0g3v0332949
Transcript ID Lj0g3v0332949.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: CTP synthase-like isoform X1 [Cicer arietinum] gi|502182968|ref|XP_004517030.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11550:SF11
1 585 585 0 –
Gene3D
G3DSA:3.40.50.300
1 289 289 2.50E-139
IPR027417
SUPERFAMILY
SSF52540
1 272 272 1.16E-118
IPR027417
TIGRFAM
TIGR00337
1 545 545 1.20E-224
IPR004468
PANTHER
PTHR11550
1 585 585 0
IPR004468
Hamap
MF_01227
1 550 550 45.801
IPR004468
ProSiteProfiles
PS51257
1 30 30 5 –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 3 3 – –
Phobius
SIGNAL_PEPTIDE
1 20 20 – –
CDD
cd03113
2 260 259 2.07E-149 –
Pfam
PF06418
2 272 271 3.80E-123
IPR017456
Phobius
SIGNAL_PEPTIDE_H_REGION
4 15 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
16 20 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
21 600 580 – –
SUPERFAMILY
SSF52317
297 549 253 2.02E-73
IPR029062
Gene3D
G3DSA:3.40.50.880
297 549 253 2.90E-102
IPR029062
CDD
cd01746
298 543 246 6.25E-141
IPR033828
ProSiteProfiles
PS51273
299 552 254 22.016
IPR017926
Pfam
PF00117
309 544 236 3.10E-58
IPR017926
MobiDBLite
mobidb-lite
563 600 38 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003883
Molecular function CTP synthase activity Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP.
Subterm of
GO:0006221
Biological process Pyrimidine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of
GO:0006241
Biological process CTP biosynthetic process The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0332949.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0332949.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.