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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0342509 |
| Transcript ID | Lj0g3v0342509.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Matrix metalloproteinase-27 [Medicago truncatula] gi|357512801|ref|XP_003626689.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | – | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| SignalP | 1 | 31 | 31 | – | – | |
| PANTHER | 10 | 31 | 22 | 3.00E-123 | – | |
| TMHMM | 10 | 32 | 23 | – | – | |
| PANTHER | 10 | 31 | 22 | 3.00E-123 | – | |
| Phobius | 16 | 29 | 14 | – | – | |
| Phobius | 30 | 33 | 4 | – | – | |
| Phobius | 34 | 354 | 321 | – | – | |
| PANTHER | 56 | 333 | 278 | 3.00E-123 | – | |
| PANTHER | 56 | 333 | 278 | 3.00E-123 | – | |
| SUPERFAMILY | 64 | 137 | 74 | 1.29E-17 | ||
| Gene3D | 66 | 332 | 267 | 3.60E-71 | ||
| Pfam | 71 | 127 | 57 | 1.80E-13 | ||
| PRINTS | 127 | 140 | 14 | 1.10E-36 | ||
| SUPERFAMILY | 158 | 330 | 173 | 4.16E-38 | – | |
| SMART | 162 | 329 | 168 | 1.50E-41 | ||
| CDD | 165 | 328 | 164 | 1.49E-61 | ||
| Pfam | 166 | 328 | 163 | 1.20E-46 | ||
| PRINTS | 196 | 211 | 16 | 1.10E-36 | ||
| PRINTS | 220 | 248 | 29 | 1.10E-36 | ||
| PRINTS | 281 | 306 | 26 | 1.10E-36 | ||
| PRINTS | 315 | 328 | 14 | 1.10E-36 | ||
| TMHMM | 351 | 373 | 23 | – | – | |
| Phobius | 355 | 373 | 19 | – | – | |
| Phobius | 374 | 375 | 2 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Metallopeptidase activity | Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Extracellular matrix | A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. |
Expression pattern of Lj0g3v0342509.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0342509.1, powered by CORGI.
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