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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3385800 |
| Transcript ID | Lj1g3v3385800.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Medicago truncatula] gi|357467129|ref|XP_003603849.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 4 | 4 | – | – | |
| SignalP | 1 | 25 | 25 | – | – | |
| Phobius | 1 | 25 | 25 | – | – | |
| SignalP | 1 | 21 | 21 | – | – | |
| PIRSF | 2 | 927 | 926 | 0 | ||
| PANTHER | 5 | 924 | 920 | 0 | – | |
| PANTHER | 5 | 924 | 920 | 0 | – | |
| Phobius | 5 | 16 | 12 | – | – | |
| Phobius | 17 | 25 | 9 | – | – | |
| Phobius | 26 | 593 | 568 | – | – | |
| SUPERFAMILY | 32 | 421 | 390 | 7.06E-84 | ||
| Gene3D | 33 | 153 | 121 | 2.60E-28 | – | |
| CDD | 38 | 427 | 390 | 1.63E-123 | – | |
| Pfam | 54 | 412 | 359 | 9.00E-82 | ||
| PRINTS | 106 | 132 | 27 | 4.70E-12 | ||
| PRINTS | 138 | 157 | 20 | 4.70E-12 | ||
| Gene3D | 154 | 302 | 149 | 5.20E-24 | – | |
| PRINTS | 157 | 173 | 17 | 4.70E-12 | ||
| PRINTS | 173 | 190 | 18 | 4.70E-12 | ||
| Gene3D | 303 | 396 | 94 | 2.60E-28 | – | |
| SUPERFAMILY | 448 | 597 | 150 | 2.93E-46 | – | |
| SUPERFAMILY | 453 | 465 | 13 | 7.06E-84 | ||
| Gene3D | 470 | 569 | 100 | 3.10E-24 | – | |
| CDD | 471 | 812 | 342 | 6.54E-80 | – | |
| SMART | 474 | 815 | 342 | 3.50E-54 | ||
| Pfam | 495 | 813 | 319 | 7.80E-17 | ||
| Gene3D | 583 | 700 | 118 | 4.00E-32 | – | |
| TMHMM | 591 | 613 | 23 | – | – | |
| Phobius | 594 | 613 | 20 | – | – | |
| Pfam | 595 | 846 | 252 | 5.60E-36 | ||
| Phobius | 614 | 624 | 11 | – | – | |
| Phobius | 625 | 643 | 19 | – | – | |
| Phobius | 644 | 654 | 11 | – | – | |
| Phobius | 655 | 679 | 25 | – | – | |
| TMHMM | 656 | 678 | 23 | – | – | |
| Phobius | 680 | 834 | 155 | – | – | |
| SUPERFAMILY | 700 | 814 | 115 | 2.93E-46 | – | |
| Gene3D | 701 | 776 | 76 | 7.60E-05 | – | |
| Gene3D | 779 | 817 | 39 | 3.10E-24 | – | |
| Phobius | 835 | 855 | 21 | – | – | |
| TMHMM | 835 | 857 | 23 | – | – | |
| Phobius | 856 | 928 | 73 | – | – | |
| MobiDBLite | 890 | 917 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | G protein-coupled receptor activity | Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. | ||
| Biological process | G protein-coupled receptor signaling pathway | A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576). | ||
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj1g3v3385800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3385800.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.