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Lj1g3v4943880.1

Overview

Field Value
Gene ID Lj1g3v4943880
Transcript ID Lj1g3v4943880.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10457:SF4
1 382 382 6.70E-122
IPR006205
PANTHER
PTHR10457
1 382 382 6.70E-122
IPR006206
Gene3D
G3DSA:3.30.230.10
2 239 238 1.70E-69
IPR014721
SUPERFAMILY
SSF54211
3 223 221 9.11E-38
IPR020568
TIGRFAM
TIGR00549
8 346 339 3.60E-80
IPR006205
PRINTS
PR00959
8 32 25 1.40E-29
IPR006206
Pfam
PF00288
133 213 81 2.00E-20
IPR006204
PRINTS
PR00959
137 159 23 1.40E-29
IPR006206
ProSitePatterns
PS00627
139 150 12 –
IPR006203
PRINTS
PR00959
194 213 20 1.40E-29
IPR006206
SUPERFAMILY
SSF55060
229 382 154 6.48E-34
IPR013750
Gene3D
G3DSA:3.30.70.890
240 377 138 3.90E-46
IPR013750
Pfam
PF08544
295 347 53 1.10E-05
IPR013750
PRINTS
PR00959
331 348 18 1.40E-29
IPR006206

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004496
Molecular function Mevalonate kinase activity Catalysis of the reaction: (R)-mevalonate + ATP = (R)-5-phosphomevalonate + ADP + 2 H(+).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0008299
Biological process Isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Subterm of
GO:0016301
Molecular function Kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
Subterm of
GO:0016773
Molecular function Phosphotransferase activity, alcohol group as acceptor Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v4943880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4943880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.