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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1069410 |
| Transcript ID | Lj2g3v1069410.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Chaperone protein clpB [Medicago truncatula] gi|357496641|ref|XP_003618609.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 77 | 971 | 895 | 0 | – | |
| PANTHER | 77 | 971 | 895 | 0 | – | |
| Gene3D | 85 | 228 | 144 | 1.90E-42 | ||
| SUPERFAMILY | 86 | 237 | 152 | 6.77E-37 | ||
| TIGRFAM | 87 | 940 | 854 | 0 | ||
| Pfam | 100 | 149 | 50 | 7.20E-15 | ||
| Pfam | 175 | 226 | 52 | 1.60E-09 | ||
| Gene3D | 240 | 423 | 184 | 1.00E-50 | ||
| SUPERFAMILY | 240 | 630 | 391 | 1.96E-98 | ||
| CDD | 262 | 422 | 161 | 6.66E-23 | – | |
| SMART | 279 | 423 | 145 | 2.20E-10 | ||
| Pfam | 284 | 417 | 134 | 2.50E-13 | ||
| ProSitePatterns | 375 | 387 | 13 | – | ||
| Gene3D | 424 | 507 | 84 | 1.20E-32 | – | |
| Coils | 515 | 542 | 28 | – | – | |
| Coils | 553 | 614 | 62 | – | – | |
| SUPERFAMILY | 631 | 937 | 307 | 5.44E-81 | ||
| Gene3D | 635 | 866 | 232 | 6.20E-58 | ||
| CDD | 656 | 855 | 200 | 1.86E-16 | – | |
| Pfam | 681 | 849 | 169 | 1.70E-56 | ||
| SMART | 682 | 857 | 176 | 1.60E-08 | ||
| PRINTS | 686 | 704 | 19 | 3.40E-40 | ||
| ProSitePatterns | 716 | 734 | 19 | – | ||
| PRINTS | 731 | 749 | 19 | 3.40E-40 | ||
| PRINTS | 760 | 778 | 19 | 3.40E-40 | ||
| PRINTS | 793 | 807 | 15 | 3.40E-40 | ||
| Pfam | 856 | 935 | 80 | 4.80E-25 | ||
| SMART | 856 | 950 | 95 | 1.70E-33 | ||
| Gene3D | 867 | 940 | 74 | 7.80E-30 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Response to heat | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. | ||
| Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of Lj2g3v1069410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1069410.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.