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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1069410 |
| Transcript ID | Lj2g3v1069410.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Chaperone protein clpB [Medicago truncatula] gi|357496641|ref|XP_003618609.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 882 | 882 | 0 | – | |
| PANTHER | 1 | 882 | 882 | 0 | – | |
| Gene3D | 2 | 139 | 138 | 7.80E-40 | ||
| SUPERFAMILY | 2 | 148 | 147 | 1.67E-34 | ||
| TIGRFAM | 3 | 851 | 849 | 0 | ||
| Pfam | 11 | 60 | 50 | 6.40E-15 | ||
| Pfam | 86 | 137 | 52 | 1.40E-09 | ||
| Gene3D | 151 | 334 | 184 | 8.70E-51 | ||
| SUPERFAMILY | 151 | 541 | 391 | 1.56E-98 | ||
| CDD | 173 | 333 | 161 | 1.18E-22 | – | |
| SMART | 190 | 334 | 145 | 2.20E-10 | ||
| Pfam | 195 | 328 | 134 | 2.20E-13 | ||
| ProSitePatterns | 286 | 298 | 13 | – | ||
| Gene3D | 335 | 418 | 84 | 1.00E-32 | – | |
| Coils | 426 | 453 | 28 | – | – | |
| Coils | 464 | 525 | 62 | – | – | |
| SUPERFAMILY | 542 | 848 | 307 | 4.53E-81 | ||
| Gene3D | 546 | 777 | 232 | 5.30E-58 | ||
| CDD | 567 | 766 | 200 | 3.23E-16 | – | |
| Pfam | 592 | 760 | 169 | 1.50E-56 | ||
| SMART | 593 | 768 | 176 | 1.60E-08 | ||
| PRINTS | 597 | 615 | 19 | 2.40E-40 | ||
| ProSitePatterns | 627 | 645 | 19 | – | ||
| PRINTS | 642 | 660 | 19 | 2.40E-40 | ||
| PRINTS | 671 | 689 | 19 | 2.40E-40 | ||
| PRINTS | 704 | 718 | 15 | 2.40E-40 | ||
| Pfam | 767 | 846 | 80 | 4.20E-25 | ||
| SMART | 767 | 861 | 95 | 1.70E-33 | ||
| Gene3D | 778 | 851 | 74 | 6.90E-30 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Response to heat | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. | ||
| Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of Lj2g3v1069410.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1069410.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.