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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2001600 |
| Transcript ID | Lj2g3v2001600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: metalloendoproteinase 1-like [Glycine max] gi|356540528|ref|XP_003538740.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 22 | 22 | 7.70E-135 | – | |
| PANTHER | 1 | 22 | 22 | 7.70E-135 | – | |
| Phobius | 1 | 29 | 29 | – | – | |
| Phobius | 1 | 12 | 12 | – | – | |
| TMHMM | 2 | 24 | 23 | – | – | |
| Phobius | 13 | 24 | 12 | – | – | |
| Phobius | 25 | 29 | 5 | – | – | |
| Phobius | 30 | 343 | 314 | – | – | |
| PANTHER | 52 | 322 | 271 | 7.70E-135 | – | |
| PANTHER | 52 | 322 | 271 | 7.70E-135 | – | |
| SUPERFAMILY | 57 | 133 | 77 | 7.22E-16 | ||
| Gene3D | 62 | 321 | 260 | 8.60E-72 | ||
| Pfam | 68 | 123 | 56 | 5.40E-10 | ||
| PRINTS | 124 | 137 | 14 | 1.90E-36 | ||
| SMART | 151 | 318 | 168 | 4.90E-44 | ||
| SUPERFAMILY | 159 | 320 | 162 | 4.40E-41 | – | |
| Pfam | 161 | 317 | 157 | 2.40E-49 | ||
| CDD | 162 | 317 | 156 | 1.96E-63 | ||
| PRINTS | 185 | 200 | 16 | 1.90E-36 | ||
| PRINTS | 209 | 237 | 29 | 1.90E-36 | ||
| PRINTS | 270 | 295 | 26 | 1.90E-36 | ||
| PRINTS | 304 | 317 | 14 | 1.90E-36 | ||
| Phobius | 344 | 360 | 17 | – | – | |
| Phobius | 361 | 362 | 2 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Metallopeptidase activity | Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Extracellular matrix | A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. |
Expression pattern of Lj2g3v2001600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2001600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.