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Lj3g3v3067920.1

Overview

Field Value
Gene ID Lj3g3v3067920
Transcript ID Lj3g3v3067920.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356543494|ref|XP_003540195.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23077:SF82
6 709 704 0 –
PANTHER
PTHR23077
6 709 704 0 –
Gene3D
G3DSA:2.40.40.20
10 114 105 4.20E-49 –
SUPERFAMILY
SSF50692
28 112 85 1.24E-27
IPR009010
SMART
SM01073
32 115 84 4.10E-30
IPR003338
Pfam
PF02359
32 113 82 3.50E-21
IPR003338
TIGRFAM
TIGR01243
38 771 734 2.20E-261
IPR005938
SUPERFAMILY
SSF54585
114 205 92 1.63E-30
IPR029067
Gene3D
G3DSA:3.10.330.10
115 205 91 7.90E-42
IPR029067
SMART
SM01072
132 197 66 4.40E-15
IPR004201
Pfam
PF02933
133 196 64 3.90E-11
IPR004201
SUPERFAMILY
SSF52540
206 466 261 1.37E-67
IPR027417
Gene3D
G3DSA:3.40.50.300
208 482 275 1.50E-95
IPR027417
CDD
cd00009
212 375 164 2.14E-31 –
SMART
SM00382
242 378 137 7.30E-23
IPR003593
Pfam
PF00004
246 375 130 2.20E-47
IPR003959
ProSitePatterns
PS00674
346 364 19 –
IPR003960
SUPERFAMILY
SSF52540
477 768 292 1.58E-72
IPR027417
Gene3D
G3DSA:3.40.50.300
483 660 178 5.40E-66
IPR027417
CDD
cd00009
485 652 168 5.49E-29 –
SMART
SM00382
515 654 140 2.00E-21
IPR003593
Pfam
PF00004
519 652 134 1.60E-45
IPR003959
ProSitePatterns
PS00674
622 640 19 –
IPR003960
Gene3D
G3DSA:1.10.8.60
661 755 95 9.80E-19 –
PANTHER
PTHR23077
732 780 49 0 –
PANTHER
PTHR23077:SF82
732 780 49 0 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v3067920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3067920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.