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IPR003338 is a CDC48, N-terminal subdomain.
<p>This entry represents the amino-terminal subdomain.</p> <p>The CDC48 N-terminal domain is a protein domain found in AAA ATPases including cell division protein 48 (CDC48), VCP-like ATPase (VAT) and N-ethylmaleimide sensitive fusion protein. It is a substrate recognition domain which binds polypeptides, prevents protein aggregation, and catalyses refolding of permissive substrates. It is composed of two equally sized subdomains. The amino-terminal subdomain forms a double-psi β-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain forms a novel six-stranded β-clamp fold [[cite:PUB00007420]]. Together these subdomains form a kidney-shaped structure.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Cell division control protein-like protein, partial [Medicago truncatula] gi|357510729|ref|XP_003625653.1| | 8 | ||
| – | PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356543494|ref|XP_003540195.1| | 13 | ||
| – | PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356508699|ref|XP_003523092.1| | 28 | ||
| – | Cell division control protein-like protein, partial [Medicago truncatula] gi|357510729|ref|XP_003625653.1| | 10 | ||
| – | PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356543494|ref|XP_003540195.1| | 27 | ||
| – | PREDICTED: vesicle-fusing ATPase-like isoform X3 [Cicer arietinum] gi|502142631|ref|XP_004505053.1| | 12 | ||
| – | Cell division control protein-like protein, partial [Medicago truncatula] gi|357510729|ref|XP_003625653.1| | 10 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 | 30 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 | 30 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 | 30 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 | 30 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 | 30 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 | 30 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JPP3|I1JPP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0689100 | 30 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400 | 29 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400 | 29 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400 | 29 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400 | 29 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400 | 29 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400 | 29 | ||
| – | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E; TrEMBL-Plants: tr|I1JPP3|I1JPP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0081500 | 30 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 4.76 |