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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3500220 |
| Transcript ID | Lj3g3v3500220.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD2-like [Glycine max] gi|356544659|ref|XP_003540765.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 8 | 243 | 236 | 3.74E-62 | – | |
| Pfam | 8 | 230 | 223 | 4.20E-37 | – | |
| SMART | 13 | 220 | 208 | 7.50E-33 | ||
| Gene3D | 14 | 228 | 215 | 2.70E-36 | ||
| CDD | 16 | 217 | 202 | 4.56E-102 | – | |
| PANTHER | 167 | 335 | 169 | 0 | – | |
| PANTHER | 167 | 335 | 169 | 0 | – | |
| SUPERFAMILY | 293 | 318 | 26 | 3.74E-62 | – | |
| Gene3D | 295 | 339 | 45 | 2.00E-21 | ||
| ProSiteProfiles | 295 | 429 | 135 | 15.73 | ||
| SUPERFAMILY | 296 | 336 | 41 | 2.15E-21 | ||
| SMART | 296 | 431 | 136 | 5.40E-19 | ||
| Pfam | 297 | 428 | 132 | 9.50E-12 | ||
| CDD | 298 | 433 | 136 | 6.55E-34 | – | |
| SUPERFAMILY | 374 | 440 | 67 | 2.15E-21 | ||
| PANTHER | 374 | 652 | 279 | 0 | – | |
| PANTHER | 374 | 652 | 279 | 0 | – | |
| Gene3D | 376 | 437 | 62 | 2.00E-21 | ||
| SMART | 477 | 611 | 135 | 1.60E-47 | ||
| ProSiteProfiles | 479 | 611 | 133 | 25.357 | ||
| SUPERFAMILY | 483 | 603 | 121 | 3.66E-35 | – | |
| Pfam | 485 | 601 | 117 | 9.90E-32 | ||
| PRINTS | 491 | 510 | 20 | 1.60E-14 | ||
| PRINTS | 510 | 527 | 18 | 1.60E-14 | ||
| PRINTS | 533 | 554 | 22 | 1.60E-14 | ||
| Gene3D | 675 | 760 | 86 | 1.60E-21 | ||
| SUPERFAMILY | 675 | 768 | 94 | 2.64E-21 | ||
| PANTHER | 680 | 773 | 94 | 0 | – | |
| PANTHER | 680 | 773 | 94 | 0 | – | |
| CDD | 682 | 762 | 81 | 1.10E-21 | – | |
| ProSiteProfiles | 682 | 714 | 33 | 12.022 | ||
| ProSiteProfiles | 682 | 775 | 94 | 24.984 | ||
| Pfam | 682 | 746 | 65 | 7.30E-10 | ||
| SMART | 682 | 711 | 30 | 2.10E-04 | ||
| ProSiteProfiles | 715 | 747 | 33 | 12.155 | ||
| SMART | 715 | 744 | 30 | 0.001 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activator activity | Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of Lj3g3v3500220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3500220.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.