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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0134610 |
| Transcript ID | Lj4g3v0134610.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: leucyl-tRNA synthetase-like [Glycine max] gi|356522021|ref|XP_003529648.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| Phobius | 13 | 20 | 8 | – | – | |
| Phobius | 21 | 873 | 853 | – | – | |
| MobiDBLite | 40 | 67 | 28 | – | – | |
| PANTHER | 59 | 278 | 220 | 0 | – | |
| PANTHER | 59 | 278 | 220 | 0 | ||
| Gene3D | 71 | 293 | 223 | 1.80E-158 | ||
| Hamap | 71 | 872 | 802 | 20.39 | ||
| SUPERFAMILY | 72 | 297 | 226 | 4.23E-138 | – | |
| TIGRFAM | 73 | 868 | 796 | 0 | ||
| CDD | 105 | 758 | 654 | 1.93E-103 | – | |
| Pfam | 111 | 243 | 133 | 8.50E-18 | ||
| ProSitePatterns | 115 | 125 | 11 | – | ||
| PRINTS | 199 | 216 | 18 | 1.80E-56 | ||
| PRINTS | 225 | 241 | 17 | 1.80E-56 | ||
| PRINTS | 257 | 270 | 14 | 1.80E-56 | ||
| PRINTS | 286 | 305 | 20 | 1.80E-56 | ||
| Pfam | 292 | 486 | 195 | 1.50E-60 | ||
| Gene3D | 294 | 507 | 214 | 3.20E-54 | ||
| SUPERFAMILY | 297 | 498 | 202 | 2.72E-48 | ||
| PANTHER | 316 | 341 | 26 | 0 | – | |
| PANTHER | 316 | 341 | 26 | 0 | ||
| PANTHER | 364 | 540 | 177 | 0 | – | |
| PANTHER | 364 | 540 | 177 | 0 | ||
| SUPERFAMILY | 499 | 767 | 269 | 4.23E-138 | – | |
| Gene3D | 508 | 662 | 155 | 1.80E-158 | ||
| PANTHER | 558 | 660 | 103 | 0 | – | |
| PANTHER | 558 | 660 | 103 | 0 | ||
| PRINTS | 574 | 592 | 19 | 1.80E-56 | ||
| PRINTS | 613 | 635 | 23 | 1.80E-56 | ||
| PRINTS | 646 | 656 | 11 | 1.80E-56 | ||
| PANTHER | 715 | 868 | 154 | 0 | ||
| PANTHER | 715 | 868 | 154 | 0 | – | |
| Pfam | 718 | 747 | 30 | 4.00E-07 | ||
| Gene3D | 718 | 747 | 30 | 1.80E-158 | ||
| Gene3D | 748 | 868 | 121 | 4.80E-31 | ||
| CDD | 758 | 868 | 111 | 8.01E-42 | – | |
| SUPERFAMILY | 771 | 868 | 98 | 1.78E-19 | ||
| Pfam | 803 | 867 | 65 | 3.20E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA editing activity | The hydrolysis of an incorrectly aminoacylated tRNA. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Leucine-tRNA ligase activity | Catalysis of the reaction: L-leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H(+) + Leu-tRNA(Leu). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Leucyl-tRNA aminoacylation | The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. The leucyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a leucine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of Lj4g3v0134610.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0134610.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.