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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1880210 |
| Transcript ID | Lj4g3v1880210.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Cicer arietinum] gi|502151559|ref|XP_004508500.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 794 | 794 | 4.90E-205 | ||
| SignalP | 1 | 19 | 19 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 3 | 13 | 11 | – | – | |
| TMHMM | 4 | 21 | 18 | – | – | |
| PANTHER | 7 | 794 | 788 | 0 | – | |
| PANTHER | 7 | 794 | 788 | 0 | – | |
| Phobius | 14 | 20 | 7 | – | – | |
| Phobius | 21 | 445 | 425 | – | – | |
| ProSiteProfiles | 29 | 146 | 118 | 13.336 | ||
| Gene3D | 31 | 151 | 121 | 9.00E-21 | ||
| SMART | 36 | 148 | 113 | 3.90E-17 | ||
| CDD | 37 | 148 | 112 | 1.22E-19 | – | |
| Pfam | 76 | 160 | 85 | 5.40E-23 | ||
| SUPERFAMILY | 77 | 164 | 88 | 9.16E-21 | ||
| SMART | 149 | 279 | 131 | 0.034 | ||
| ProSiteProfiles | 149 | 281 | 133 | 8.221 | ||
| Gene3D | 152 | 283 | 132 | 2.80E-12 | ||
| Pfam | 169 | 235 | 67 | 1.20E-07 | ||
| SUPERFAMILY | 172 | 271 | 100 | 1.33E-08 | ||
| Pfam | 249 | 318 | 70 | 2.70E-06 | ||
| Gene3D | 426 | 523 | 98 | 2.10E-12 | ||
| TMHMM | 446 | 468 | 23 | – | – | |
| Phobius | 446 | 473 | 28 | – | – | |
| Phobius | 474 | 794 | 321 | – | – | |
| SUPERFAMILY | 495 | 778 | 284 | 9.98E-78 | ||
| ProSiteProfiles | 510 | 780 | 271 | 36.541 | ||
| SMART | 510 | 777 | 268 | 4.40E-31 | ||
| Pfam | 512 | 773 | 262 | 1.00E-47 | ||
| CDD | 516 | 780 | 265 | 7.92E-85 | – | |
| ProSitePatterns | 516 | 539 | 24 | – | ||
| Gene3D | 524 | 575 | 52 | 1.20E-23 | – | |
| Coils | 538 | 558 | 21 | – | – | |
| Gene3D | 576 | 774 | 199 | 1.40E-43 | – | |
| ProSitePatterns | 630 | 642 | 13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | Protein serine/threonine kinase activity | Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. | ||
| Biological process | Recognition of pollen | The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. |
Expression pattern of Lj4g3v1880210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1880210.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.