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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0240200 |
| Transcript ID | Lj5g3v0240200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter B family member 13-like [Cicer arietinum] gi|502126388|ref|XP_004499289.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 394 | 394 | – | – | |
| ProSiteProfiles | 1 | 22 | 22 | 5 | – | |
| SignalP | 1 | 27 | 27 | – | – | |
| TMHMM | 13 | 35 | 23 | – | – | |
| SUPERFAMILY | 62 | 307 | 246 | 8.95E-94 | ||
| Gene3D | 70 | 300 | 231 | 2.20E-86 | ||
| ProSiteProfiles | 71 | 306 | 236 | 25.517 | ||
| CDD | 71 | 307 | 237 | 4.12E-143 | – | |
| Pfam | 89 | 237 | 149 | 2.60E-37 | ||
| SMART | 97 | 283 | 187 | 1.30E-18 | ||
| PANTHER | 203 | 920 | 718 | 0 | – | |
| PANTHER | 203 | 920 | 718 | 0 | – | |
| ProSitePatterns | 209 | 223 | 15 | – | ||
| MobiDBLite | 314 | 338 | 25 | – | – | |
| SUPERFAMILY | 370 | 682 | 313 | 6.28E-53 | ||
| Gene3D | 370 | 682 | 313 | 3.20E-47 | – | |
| Pfam | 382 | 655 | 274 | 6.90E-52 | ||
| ProSiteProfiles | 382 | 669 | 288 | 42.337 | ||
| TMHMM | 389 | 411 | 23 | – | – | |
| Phobius | 395 | 412 | 18 | – | – | |
| Phobius | 413 | 423 | 11 | – | – | |
| TMHMM | 424 | 446 | 23 | – | – | |
| Phobius | 424 | 446 | 23 | – | – | |
| Phobius | 447 | 504 | 58 | – | – | |
| TMHMM | 502 | 524 | 23 | – | – | |
| Phobius | 505 | 522 | 18 | – | – | |
| Phobius | 523 | 528 | 6 | – | – | |
| TMHMM | 526 | 548 | 23 | – | – | |
| Phobius | 529 | 548 | 20 | – | – | |
| Phobius | 549 | 610 | 62 | – | – | |
| TMHMM | 611 | 633 | 23 | – | – | |
| Phobius | 611 | 631 | 21 | – | – | |
| Phobius | 632 | 642 | 11 | – | – | |
| Phobius | 643 | 663 | 21 | – | – | |
| TMHMM | 646 | 668 | 23 | – | – | |
| Phobius | 664 | 920 | 257 | – | – | |
| SUPERFAMILY | 693 | 920 | 228 | 2.62E-83 | ||
| Gene3D | 703 | 920 | 218 | 1.20E-80 | ||
| CDD | 704 | 920 | 217 | 2.21E-125 | – | |
| ProSiteProfiles | 704 | 920 | 217 | 20.862 | ||
| Pfam | 723 | 871 | 149 | 1.10E-33 | ||
| SMART | 731 | 917 | 187 | 4.40E-18 | ||
| ProSitePatterns | 843 | 857 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v0240200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0240200.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.