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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2182120 |
| Transcript ID | Lj5g3v2182120.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter B family member 2-like [Glycine max] gi|356497653|ref|XP_003517674.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 1 | 14 | 14 | – | – | |
| Phobius | 4 | 9 | 6 | – | – | |
| PANTHER | 4 | 304 | 301 | 3.50E-160 | – | |
| Phobius | 10 | 14 | 5 | – | – | |
| Phobius | 15 | 367 | 353 | – | – | |
| SUPERFAMILY | 49 | 295 | 247 | 2.49E-85 | ||
| Gene3D | 56 | 289 | 234 | 3.10E-82 | ||
| CDD | 57 | 295 | 239 | 1.18E-135 | – | |
| ProSiteProfiles | 57 | 293 | 237 | 24.99 | ||
| Pfam | 76 | 224 | 149 | 2.70E-34 | ||
| SMART | 84 | 270 | 187 | 1.70E-15 | ||
| ProSitePatterns | 196 | 210 | 15 | – | ||
| Gene3D | 359 | 617 | 259 | 2.80E-34 | – | |
| SUPERFAMILY | 359 | 621 | 263 | 1.44E-38 | ||
| Phobius | 368 | 401 | 34 | – | – | |
| TMHMM | 370 | 392 | 23 | – | – | |
| ProSiteProfiles | 374 | 627 | 254 | 34.427 | ||
| Pfam | 375 | 617 | 243 | 4.90E-42 | ||
| Phobius | 402 | 412 | 11 | – | – | |
| TMHMM | 413 | 435 | 23 | – | – | |
| Phobius | 413 | 430 | 18 | – | – | |
| Phobius | 431 | 492 | 62 | – | – | |
| TMHMM | 493 | 515 | 23 | – | – | |
| Phobius | 493 | 513 | 21 | – | – | |
| Phobius | 514 | 596 | 83 | – | – | |
| TMHMM | 595 | 617 | 23 | – | – | |
| Phobius | 597 | 617 | 21 | – | – | |
| Phobius | 618 | 627 | 10 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v2182120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2182120.1, powered by CORGI.
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