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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0188000 |
| Transcript ID | LotjaGi1g1v0188000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G18900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900; TrEMBL-Plants: tr|A0A151S797|A0A151S797_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi1g1v0188000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36802409..36806720) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGAGGCAGTGATATCAGGGCTAACCTCATAATATATAGCTGCTTCTCTTCCCAACTTGCTTGGAAACACTTTGCCC TTTGACGCCACTCACCAAACCCGCCGCCACCATCACCACCACCACCTTCCGCTTTCCTCCGCCTCTCTCAGCTCTTCTAT GGTTCCGTAAAACTGCTGAACGATGCAGGTACCTTTCTTCCTGATTCCTCTTCACTTTTCATGTTTTAGACACCAATCTT TACTTCACGATGCTGCTACATTGGTTTGTTTGGGTCTGTTAATGAAAATTGTGTCGCTTTGTTATTCCGAGGTTCATTTC AGGCATGGTTTTTAGATCGGTGTGTGGAAAATTGGATTTTTTGTTATAGTTCAGTGTGTGTTTTATATGCAGTAAATTTT TTAAAGTTTCAGAGTTTATGGTGAGTTAGTAGCATTACGGACCAAGGTTATTGATTTATCAAAAGGGTTTCAGAGAGGTT TCATTTCTAAAGTTTAAATCATGGTTCATTACCAAGATTGCAAAATCATGTTTTTTTTTTCAATTCTAGCTGTATAGGCT GTAATTATGGGTTATTTAATCACAACCGTGATCATTATCTGTGGCTTTGTTATATGTGTGGAATTGCTGAATTTGAATGG TTTGAGTCAGCTACCCGTGTCCACCCTTTTGGTTTCACTACAAAGATTCATGATAGGGTTGATGAATCTATGTAGCTGAT TCTATTTGGTGTGAAAAGGATATAAGACACCTGTCAGTACTCTGCTGGTTGTGACTTTATGGCTGACATGAGATTGCAGC AATATTTTCTTCTTTTTTGTGAAATATTCTTTTTATATTTGTGGCTTTTGTTGATAATTATGATGAACACATGCTTAAAG TTTGTGTTAGCTCTGTTATGTCAAAGTGTTGTTTTGGCTCTTGGCACTGCTCTTTCGTCCAAATGTAACTTTACAACTGA TGGTATTTTGTCATAAAAACACTAGCGCCGTGAGTGATTTCGAGTCGGGTTGATGCTTGCATTTGCATTCTGATTATATG TTGTTTATTTGCGGCCATGATGAGCTTCTTATGTACAGAAAGTTCCTGGAAAATTGGCCTCTTTCTGCTGATGCCTACCT CTTTCAATTTTGTGTCAGGAGTTTAATGATTATGAACTGTTGAACTGTATTTGCAGAATATGTTACGAGGAAAGCAGATC AGTTCCCTTTCAAGCACTGCTAGGAGCTTTTTCCTCAGTGGTTCACGATGTAATGGAGCTGAAGGAAATTCATGCACTTG TCCTGAGGATGAAACATGTGTATCAAGAAGACAGAGGAGGAAAAATGAAGATTTACTTGTACAGAAGCCATCTTCCTTAG TATCCAAGACCACATCTCAAGTGAAAGGAACCCTGGTTTCAGGAAACTCGGCAAGTTCAGCAAATGCGCCATGTATCCGC AAGGCTGAGAGTGTTGATCAATCATCTGCTCTTGTACAAGTCAGGTCTACTTTAGGTCCATCAAGTAAATCAGATACTGT AACATATGCATGTGTTGTTGATGGTGTCCAGAACCATGCTGTGCACTCATCTCCTCTTGATTCTGAACAATTTTATAGGG CAGGTATTGCAGCTGTCAATTTTCTTTCTGACTTTGTTAATAATAAGTTTCCTTCATCAGATGGGATGGGAATACTTAGC CACTCTAAAAATTATGTGGTTGATGCGGCCAGAGCCCTGCCCAACATCAGACCTGCGAGCGTGAAACAAATTAGAAAGGA AGATTTTACCAGTGTTCATCCTAAACCACCTCCTTCTACACATCCAGGGCCGTCAAAAGCTGCAAGTAGTTATCATGGTG CAAAGGGAAAAGTTGATAAACCAAACCTAGGTAAAAGCTTTAAGCATGTTGCTTCTTCAGGGAAAGAGAAATCAAGAGTG GCTCCAAATATTCCTTTAAATAATAATGACTGCAGAGCCTTGCCACAGAGAACAAGAACTCATTCAAACCACTTTGTGAC AAATGATGGTTCCAACACGCAAACTTTAAATTCACAGAAGTCGGGCTCATTCAAGGAAAGCTTCAATAGACACCCCAGGG ATATGAAAATGCCAGCTGGAATTGCTCAAACAAACAGGCATTTTACAAACACAGGGCATGTTGTTGAAACAATTAAAGAT ATACTGCAACAGTTAAAGTGGGGTCCTGCTACGGAGAAGGCTCTTTATGACCTGAATTTTTCAATAGATGCATATCGAGC TAACCAAATCCTAAAGCAGCTTCAGGACCATTCAGTTGCCCTAAGCTTCTTTTACTGGTTAAGGCGACAACAAGGCTTCT GGCATGATGAGCATACTTATACCACGATGGTTGGTATCCTGGGCCGTGCAAGAGAGTTTGGCGCAATAAACAAATTGCTA GAGCAGATGGTGAATGATGGATGCCAGCCTAATGTTGTAACCTATAATCGTCTAATTCACAGCTATGGCCGTGCAAACTA CCTAAAAGAAGCACTGAATGTCTTCAATCAAATGCAGGAGGTGGGATGTGAGCCTGATCGTGTCACTTACTGCACGCTCA TTGATATCCATGCAAAAGCTGGATTTCTTGATGTTGCCATGTCGATGTATGAAAGAATGCTAGAAGTTGGCCTTACTCCT GACACATTTACTTACAGCGTAATAATCAACTGTCTTGGAAAATCTGGTAATTTAGCTGCTGCCCACAGGCTATTTTGTGA GATGGTCGATCATGGTTGTGTTCCTAATATTGTTACCTACAATATCATGATTGCTTTGCAAGCTAAAGCTAGGAACTATC AGGCATCATTGAAGCTGTATCATGACATGCAGAATGCAGGATTTAAACCTGACAAAGTTACTTATAATATTGTAATGGAG GTGCTTGGTCACTGTGGATATCTTGAGGAAGCTGAAGCAGTCTTTGTTGAAATGAAGCGGAAAAATTGGGTTCCGGATGA ACCTGTTTACGGTCTTCTGGTAGACATGTGGGGAAAGGCTGGTAATGTTGAGAAGGCTTGGGAATGGTATCAGGAAATGA TTAATGCTGGTTTGCTTCCAAATGTACCAACCTGCAATTCCCTTCTCAGCACATTTCTTAGGATGTATCGATTGGCAGAT GCATATAATCTTCTCCAAAGCATGGTGGCTCTTGGCCTCAGGCCTTCTTTGCAGACTTATACTTTACTTCTCAGCTGTTG TACAGATGCACAGTCACCATATGATATGGGATTTTGTGGTGAGCTCATGGGAGTTACTGGCCATCCTGCGCATGCTTTTT TACTGTCCATGCCAGCAGCAGGGCCTGATGGCCAAAATGTGAGGGATCATGTAAACAAATTCTTGGACCTGATGCATTCT GAGGAAAGGGAGGGCAAAAGAGGGCTTGTAGATGCAGTGGTGGATTTTCTTCACAAATCTGGGCTCAAGGAAGAGGCTGG TTCAGTTTGGGAGGTAGCTGCACAAAGAAATGTGTATCCAGATGCGGTCAAGGAGAAAAGTTCCTGTTATTGGCTCATAA ATCTTCATGTGATGTCTGATGGAACTGCTGTGACAGCATTGTCTAGGACACTTGCTTTGTTTCGAAAGCAGATGCTCATG TCCGGTGTCGGCCCGAGCCGGATTGATATTGTGACCGGGTGGGGTCGCCGGAGCAGGGTGACTGGAACCTCTCTTGTGAG ACAGGCAGTGCAAGAACTGCTGCAGGTATTCAGTTTCCCATTCTTCACTGAAAACGGCAATTCAGGTTGTTTTGTGGGAT GTGGGGAGCCTCTTAATCAATGGCTGCTGCACTCTTATGTTGAGAGAATGCATTTACTGTAGTTGGCTATTGTAAAATCA TTTGCCTCTTCAGCTTAGAAACAATTTTGCTGCAGGAAATGAGATTAATGCTGATTTTGTATTTAATTTCTAGTTTGCCA GTGTGTAGTTATCCTAGCTATTATCTGCTAAATTTATTTATCTTTGAATGGTAAAGTGATGATTGATGGTAGCCTTTGCC TTCCTAATGCTATTTCAGTGTGCTTTCTTGAAGATATAAGAATATCTTATATGATGTATAGAGATTGCAATTCGTCAGCT TCGGGTAGGGTATTATAACATTGGTGTCTATGCCTATGTTTTAAATCATGAGCATACATAGATTTATACTCATATGGGTA GTAATTTTGATGACGCATCTTATTGCATTTTGATTAATAGCTTGAATATGACCTTGTAAGATTAGTTTGTTCTATTTTAA TATGAATGATTGACCAGAAAAGGCATTTACTGAAAATGCAACATATAACTCATTTAAGAAAAATCAAAGGCG
CDS sequence (LotjaGi1g1v0188000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAATATGTTACGAGGAAAGCAGATCAGTTCCCTTTCAAGCACTGCTAGGAGCTTTTTCCTCAGTGGTTCACGATG TAATGGAGCTGAAGGAAATTCATGCACTTGTCCTGAGGATGAAACATGTGTATCAAGAAGACAGAGGAGGAAAAATGAAG ATTTACTTGTACAGAAGCCATCTTCCTTAGTATCCAAGACCACATCTCAAGTGAAAGGAACCCTGGTTTCAGGAAACTCG GCAAGTTCAGCAAATGCGCCATGTATCCGCAAGGCTGAGAGTGTTGATCAATCATCTGCTCTTGTACAAGTCAGGTCTAC TTTAGGTCCATCAAGTAAATCAGATACTGTAACATATGCATGTGTTGTTGATGGTGTCCAGAACCATGCTGTGCACTCAT CTCCTCTTGATTCTGAACAATTTTATAGGGCAGGTATTGCAGCTGTCAATTTTCTTTCTGACTTTGTTAATAATAAGTTT CCTTCATCAGATGGGATGGGAATACTTAGCCACTCTAAAAATTATGTGGTTGATGCGGCCAGAGCCCTGCCCAACATCAG ACCTGCGAGCGTGAAACAAATTAGAAAGGAAGATTTTACCAGTGTTCATCCTAAACCACCTCCTTCTACACATCCAGGGC CGTCAAAAGCTGCAAGTAGTTATCATGGTGCAAAGGGAAAAGTTGATAAACCAAACCTAGGTAAAAGCTTTAAGCATGTT GCTTCTTCAGGGAAAGAGAAATCAAGAGTGGCTCCAAATATTCCTTTAAATAATAATGACTGCAGAGCCTTGCCACAGAG AACAAGAACTCATTCAAACCACTTTGTGACAAATGATGGTTCCAACACGCAAACTTTAAATTCACAGAAGTCGGGCTCAT TCAAGGAAAGCTTCAATAGACACCCCAGGGATATGAAAATGCCAGCTGGAATTGCTCAAACAAACAGGCATTTTACAAAC ACAGGGCATGTTGTTGAAACAATTAAAGATATACTGCAACAGTTAAAGTGGGGTCCTGCTACGGAGAAGGCTCTTTATGA CCTGAATTTTTCAATAGATGCATATCGAGCTAACCAAATCCTAAAGCAGCTTCAGGACCATTCAGTTGCCCTAAGCTTCT TTTACTGGTTAAGGCGACAACAAGGCTTCTGGCATGATGAGCATACTTATACCACGATGGTTGGTATCCTGGGCCGTGCA AGAGAGTTTGGCGCAATAAACAAATTGCTAGAGCAGATGGTGAATGATGGATGCCAGCCTAATGTTGTAACCTATAATCG TCTAATTCACAGCTATGGCCGTGCAAACTACCTAAAAGAAGCACTGAATGTCTTCAATCAAATGCAGGAGGTGGGATGTG AGCCTGATCGTGTCACTTACTGCACGCTCATTGATATCCATGCAAAAGCTGGATTTCTTGATGTTGCCATGTCGATGTAT GAAAGAATGCTAGAAGTTGGCCTTACTCCTGACACATTTACTTACAGCGTAATAATCAACTGTCTTGGAAAATCTGGTAA TTTAGCTGCTGCCCACAGGCTATTTTGTGAGATGGTCGATCATGGTTGTGTTCCTAATATTGTTACCTACAATATCATGA TTGCTTTGCAAGCTAAAGCTAGGAACTATCAGGCATCATTGAAGCTGTATCATGACATGCAGAATGCAGGATTTAAACCT GACAAAGTTACTTATAATATTGTAATGGAGGTGCTTGGTCACTGTGGATATCTTGAGGAAGCTGAAGCAGTCTTTGTTGA AATGAAGCGGAAAAATTGGGTTCCGGATGAACCTGTTTACGGTCTTCTGGTAGACATGTGGGGAAAGGCTGGTAATGTTG AGAAGGCTTGGGAATGGTATCAGGAAATGATTAATGCTGGTTTGCTTCCAAATGTACCAACCTGCAATTCCCTTCTCAGC ACATTTCTTAGGATGTATCGATTGGCAGATGCATATAATCTTCTCCAAAGCATGGTGGCTCTTGGCCTCAGGCCTTCTTT GCAGACTTATACTTTACTTCTCAGCTGTTGTACAGATGCACAGTCACCATATGATATGGGATTTTGTGGTGAGCTCATGG GAGTTACTGGCCATCCTGCGCATGCTTTTTTACTGTCCATGCCAGCAGCAGGGCCTGATGGCCAAAATGTGAGGGATCAT GTAAACAAATTCTTGGACCTGATGCATTCTGAGGAAAGGGAGGGCAAAAGAGGGCTTGTAGATGCAGTGGTGGATTTTCT TCACAAATCTGGGCTCAAGGAAGAGGCTGGTTCAGTTTGGGAGGTAGCTGCACAAAGAAATGTGTATCCAGATGCGGTCA AGGAGAAAAGTTCCTGTTATTGGCTCATAAATCTTCATGTGATGTCTGATGGAACTGCTGTGACAGCATTGTCTAGGACA CTTGCTTTGTTTCGAAAGCAGATGCTCATGTCCGGTGTCGGCCCGAGCCGGATTGATATTGTGACCGGGTGGGGTCGCCG GAGCAGGGTGACTGGAACCTCTCTTGTGAGACAGGCAGTGCAAGAACTGCTGCAGGTATTCAGTTTCCCATTCTTCACTG AAAACGGCAATTCAGGTTGTTTTGTGGGATGTGGGGAGCCTCTTAATCAATGGCTGCTGCACTCTTATGTTGAGAGAATG CATTTACTGTAG
Protein sequence (LotjaGi1g1v0188000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQNMLRGKQISSLSSTARSFFLSGSRCNGAEGNSCTCPEDETCVSRRQRRKNEDLLVQKPSSLVSKTTSQVKGTLVSGNS ASSANAPCIRKAESVDQSSALVQVRSTLGPSSKSDTVTYACVVDGVQNHAVHSSPLDSEQFYRAGIAAVNFLSDFVNNKF PSSDGMGILSHSKNYVVDAARALPNIRPASVKQIRKEDFTSVHPKPPPSTHPGPSKAASSYHGAKGKVDKPNLGKSFKHV ASSGKEKSRVAPNIPLNNNDCRALPQRTRTHSNHFVTNDGSNTQTLNSQKSGSFKESFNRHPRDMKMPAGIAQTNRHFTN TGHVVETIKDILQQLKWGPATEKALYDLNFSIDAYRANQILKQLQDHSVALSFFYWLRRQQGFWHDEHTYTTMVGILGRA REFGAINKLLEQMVNDGCQPNVVTYNRLIHSYGRANYLKEALNVFNQMQEVGCEPDRVTYCTLIDIHAKAGFLDVAMSMY ERMLEVGLTPDTFTYSVIINCLGKSGNLAAAHRLFCEMVDHGCVPNIVTYNIMIALQAKARNYQASLKLYHDMQNAGFKP DKVTYNIVMEVLGHCGYLEEAEAVFVEMKRKNWVPDEPVYGLLVDMWGKAGNVEKAWEWYQEMINAGLLPNVPTCNSLLS TFLRMYRLADAYNLLQSMVALGLRPSLQTYTLLLSCCTDAQSPYDMGFCGELMGVTGHPAHAFLLSMPAAGPDGQNVRDH VNKFLDLMHSEEREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRT LALFRKQMLMSGVGPSRIDIVTGWGRRSRVTGTSLVRQAVQELLQVFSFPFFTENGNSGCFVGCGEPLNQWLLHSYVERM HLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 883 | 854 | - | – | |
| MobiDBLite | 196 | 297 | 102 | - | – | |
| MobiDBLite | 228 | 245 | 18 | - | – | |
| MobiDBLite | 252 | 295 | 44 | - | – | |
| PANTHER | 314 | 593 | 280 | 1.7E-102 | – | |
| Gene3D | 346 | 472 | 127 | 2.3E-31 | ||
| ProSiteProfiles | 386 | 420 | 35 | 10.424 | ||
| TIGRFAM | 388 | 422 | 35 | 1.2E-5 | ||
| Pfam | 389 | 418 | 30 | 0.1 | ||
| Pfam | 420 | 466 | 47 | 8.9E-16 | ||
| ProSiteProfiles | 421 | 455 | 35 | 13.307 | ||
| TIGRFAM | 423 | 456 | 34 | 6.8E-10 | ||
| SUPERFAMILY | 423 | 627 | 205 | 2.14E-5 | – | |
| ProSiteProfiles | 456 | 490 | 35 | 11.707 | ||
| TIGRFAM | 458 | 492 | 35 | 2.3E-7 | ||
| Gene3D | 473 | 593 | 121 | 7.1E-35 | ||
| PANTHER | 483 | 875 | 393 | 1.7E-102 | – | |
| Pfam | 487 | 519 | 33 | 3.5E-8 | ||
| ProSiteProfiles | 491 | 525 | 35 | 12.814 | ||
| TIGRFAM | 493 | 527 | 35 | 4.4E-10 | ||
| Pfam | 525 | 570 | 46 | 5.5E-13 | ||
| ProSiteProfiles | 526 | 560 | 35 | 11.137 | ||
| TIGRFAM | 528 | 561 | 34 | 3.1E-7 | ||
| ProSiteProfiles | 561 | 595 | 35 | 12.145 | ||
| TIGRFAM | 563 | 597 | 35 | 1.4E-8 | ||
| ProSiteProfiles | 596 | 630 | 35 | 11.301 | ||
| Pfam | 599 | 628 | 30 | 8.1E-4 | ||
| TIGRFAM | 599 | 632 | 34 | 9.0E-7 | ||
| Pfam | 630 | 677 | 48 | 7.2E-8 | ||
| ProSiteProfiles | 631 | 665 | 35 | 9.898 | ||
| ProSiteProfiles | 736 | 770 | 35 | 5.349 | ||
| SMART | 780 | 872 | 93 | 2.2E-17 | ||
| SUPERFAMILY | 781 | 861 | 81 | 9.29E-7 | ||
| ProSiteProfiles | 783 | 864 | 82 | 16.369 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0188000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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