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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0521700 |
| Transcript ID | LotjaGi1g1v0521700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G31400.1 s uncoupled 1; Swiss-Prot: sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; TrEMBL-Plants: tr|G7KS10|G7KS10_MEDTR PPR containing plant protein; Found in the gene: LotjaGi1g1v0521700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104608528..104612606) extracted from Lotus japonicus Gifu genome v1.2.
GGGCAAAATGGGGCAAAAAGGAAAAGTGATACCAAAATCCAAACCCCTTATCCAATTGAAGCTCAAGACCTGAGTGAGTG AGAGTAGTAGGTAACAATGGTTACAACAACAAAGTTGGAAATCCAAGGATGTCTGCCATGTAATCACCTTCAACTTCAAG ATCAACCCACTCACTCCACTCTTTCTTCACACTCTCTCTCTCCCTCAACACACTGCAACACCATCTTTGATCCTCGGTAA TCGAGCTGCAAGCTCTCTCCTTTCCGTTGAATTCGGATACCCTTTTGCCTTCTTCAATGGCTTCCACTCCAACCCCACCT CCTAATTGCTCCTCCGTCGCCTCACGCCCCACCGCCAACAACAACAACCACTCCAACCACCCCCACCGCCACCACAAAAA CCACTTCAAGAACCAGCACCAACGCCACAACAATCGCTTGTCTGCCTCCAGGTACTCCTCTAAGCCTTTACCTATAGCCG CTGCTGCAACTGACATAGGTGGTGCTGTTGGAGTTGGAGCTGGTGCAGGTGTTGGTGCTCCTCTTGCTGGCAGTGGCAAT GCTCCTCCTGCTTTCACCTCCTCCCTTGGTTCATTTATGGGTGCCCGGAAGTCGAGGCTGGCGCCGGAGTTTTCCGGGCG GCGGTCGACACGGTTTGTGGCGAAGATGCACTCTGGTAGTCCCAGGATCAACCCCAACAATCATCCTCATACGAAGGCGG CTGAAGAGGCATTGCACTGCCTCCTCCAAGCTGGTAATGATGCTGCTGCTCTTGATACTGTGTTGTTTAACTATGAACAT AGGCTGTGGGGGTGTGAGGATTATATTTACATGCTTAAGGAATGTGGGAACAATGGTAGGTTCTTGCTGGCTACTAAGTG CTATGATTTTGCCATGTGGAAGGAGAATGGGAGGGTTAATAAAGGGAAGTTGACTAGTACTATGATTAGTACTCTTGGTA GGTTGGGGAAGATTGAGCATGCTGTGAGGCTGTTTGAGATAGGGAGGTATGAAGGGTATGGGAACACTGTGTATGCTTAT TCTGCTATGATTAGTGCGTATGGGCGTAATGGCTGTTTTCCTGATGCCATTACATTGTTCAAGTCCATGAGAAGCTTGGG TTTGGAACCCAACTTGATTACCTATAATGCACTGATTGATGCAGGGGCCAAGGGGGGAGTGGAGTTTAACACAGTTGTTA AGTTTTTTGATGAAATGGTGGCCAATGGATTGGTGCCGGATAGGGTTACTTACAATTCACTTATTTCAGCCTGTGTCCCC AAGGGCTTGTGGGAAGTGGCTCAGAATTTGTTGAGTGAAATGGAGCAGAAAGGGATTGACCGGGATTTATACACATATAA TACATATGTGGATGCGTTGTGTAAGGGTGGTAAGATGGATTTAGCCAAGAAGGTGATGGAGGAGATGTCTGGTAGGAGAA TTTGGCCCAATGTGGTAACTTATAGTACCATGATGGATGGTTATGCCAAGGCTGGCCTCTTAGAAGACGCCATAAGTTTG TATGATGAAATGAAGCGTCTGGCGGTCGGTTTTGACAGGGTGTCTTATAATACCATGGTGGGGATTTATGCTAAGCTGGG TTTGCTGGAGGAGGCAATCTATGTATGTAAAGAGATGGAGAGCTGTGGAATAAAAAATGATGTGGTAACTTATAATGCAC TTTTGGGTGGGTTTGGGAAGCATGGCAAATATGATGATGTTAGTAGGATTTTTGCTGAGATGAAAGCCCGAAATATACAT CCAAATACATTAACTTACTCAACAATGATTGATGTGTACACAAAAGGTGGAATGTATAGGGAAGCAATGGATGCTTATAG AGAGTTCAAGCAGGAAAGGTTGGAGGCTGATGTTGTTTTCTATAGTGCACTAATTGATGCCCTTTGCAAGAATGGTTTAG TGGAGTCTTCTATGGTGTTGCTTGATGCAATGATAGAGAAAGGAATTAGGCCCAATGTTGTCACTTACAACTCCATAATT GATGCATTTGGTCAGCTGTCAGCTTTGGAATGTGGGGTTGATACTTCTGTTCAAGCCAATGAGCATCGAGTTGTACCTTC ATCTTCTATGCTTATTGATGGTGCCCTCCAAAATCTAGCTATAGGTAAGGAGGATGACCGGATCATGAAGATGTTTGAGC AACTTGCTGCTGAAAAATCAGGTCAAATAAAGAAGGACATGAGGGGCAGTCAGGACAAGTTCTGCATCTTGTGGCTCTTT CGGAAAATGCATGAGATGGAAATCAAACCTAATGTTGTCACATTTTCTGCCATTTTGAATGCTTGCAGGTAAATACTTAT CCAATGTTCTTTTACTGTTTCTACTACAACCTCTTAATATGTGCTTTGATATTCTCTTATGAATATATAACCAATCACAA AATCTGTAATTTGGTTGGATGCAGCAATTGCAAGTCCTTTGAAGATGCTTCAAAGCTGTTAGATGAGCTTCGCCTGTTTG ACAACCAGGTGTATGGGGTAGCCCATGGGCTACTCTTGGGTTACAGGGAACAGATATGGCTTCAGGCTCAATCTCTGTTT GATGAAATAAAAAGAATGGACTCTTCAACGGCATCTGCCTTTTATAATGCCCTGACAGATATGCTGTGGCACTTTGGTCA GGTAAAGTCTAGATTTTAGAAATTTGCCACTTTTGCATCTCTTATAGCACATTTGGTTCCATGGTAAAATACTATAGAAT CAATTTTGGTTAGAAGCTACAATTCTTAGCTTTTTAGTAAATGTGGAATGAGCTCTATGCGTATTGTGAAACTAAACATG CTATTAGTTTTTTATTTGCTATCTAAGATTAGTGTTAGAAGTTTATAAGAGATGCACCCTTTCTTTGTGTTAATCTGACA TTATCGTTTTGTGTGTTTTTTTATATAATAAATTTGACATCAGAAACGTGGGGCTCAACTGGTCGTGCTTGAAGGGAAAC GCCGCGAAGTGTGGAATGGTGACTGGTCTGAATCTTGTTTGGATCTGCACATGATGTCTTGTGGTGCTGCTAGTGCTATG GTTCATGCATGGTTGCTCAAGATACGTTCTGTAGTGTTTGAAGGCTGTGAACTGCCCAAGATATTGAAGTATGCATCTTT CCCTCAGATCAAGTTTTTATGTTCCCAAGCGGTGCCCCAGTTTACTGTCCCATTAAAAAATTGAGTAAAAATGAGTGAGA CAGTTACAAATTTACATGATGGTTTTTAATTGACATGTCAACATTTGGGTGATGGGACAAAGAATGAGACACACTTTGGG AACAGAAGATTTCAATCCCCCTCCCTCTTAAGATTATTCTTGTTTTGCTTTGGGGACTAGTGAGGATTGAAGTGTTAATC ATTCATTGTCTTTTTTGCAGCATTTTAACTGGCTGGGGTAAGCACAGCAAGGTTGTTGGTGACGGCACTCTAAGAAAGGC TATTGAGGCACTCCTGAATGGCATGGGTTCACCCTTTAAGATTGCTGAATGTAACTTAGGAAGATTTATTTCTCCAGGGT ACTTGGTAGCTGCCTGGTTGAAACAATCCAGCACACTGAATGTGCTTGTTTTGCATGATCTAAAAAATTCTGAACCTGCT GCTGAGCATAAGTTGCCAGCACTTTGCATTTAGCTACAATGTTATGCTGCTTTTTTGGTCAAAAAGTCCTTAAATTCAAT GTCTACCCTTTTGTGCTTAACACCAGAGGTTTGTTTATCTAGAAAGTAACTGATAAATAAAAAGGAATGAATGAATTATA AGTTTAAGCATTATGAATTTGAAGTTTTAGGATATGAATACAAATTTAAGGACATCAATCCTTAGTTCTCCTTTCCTCAC TTGAGTCTCATAATTCTGCTGGCAGTTTACTCTTAGCTTCCCGCATATAATTAATTGTTTTAATCCAAGAACTTAGATTC ATCAATGTCGAGCAGATAAATGACAATAATTATTAGCATTCTCCAATAATTGACACACAATCACCTATCGGTTTCCAAAG GGATGCCTTTAAAATAAATATAGACACAATTTAGTTTTATCAAAGTTCTATAGCCTTATTAGAATGTGAATATCCAGGG
CDS sequence (LotjaGi1g1v0521700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCACTCCAACCCCACCTCCTAATTGCTCCTCCGTCGCCTCACGCCCCACCGCCAACAACAACAACCACTCCAA CCACCCCCACCGCCACCACAAAAACCACTTCAAGAACCAGCACCAACGCCACAACAATCGCTTGTCTGCCTCCAGGTACT CCTCTAAGCCTTTACCTATAGCCGCTGCTGCAACTGACATAGGTGGTGCTGTTGGAGTTGGAGCTGGTGCAGGTGTTGGT GCTCCTCTTGCTGGCAGTGGCAATGCTCCTCCTGCTTTCACCTCCTCCCTTGGTTCATTTATGGGTGCCCGGAAGTCGAG GCTGGCGCCGGAGTTTTCCGGGCGGCGGTCGACACGGTTTGTGGCGAAGATGCACTCTGGTAGTCCCAGGATCAACCCCA ACAATCATCCTCATACGAAGGCGGCTGAAGAGGCATTGCACTGCCTCCTCCAAGCTGGTAATGATGCTGCTGCTCTTGAT ACTGTGTTGTTTAACTATGAACATAGGCTGTGGGGGTGTGAGGATTATATTTACATGCTTAAGGAATGTGGGAACAATGG TAGGTTCTTGCTGGCTACTAAGTGCTATGATTTTGCCATGTGGAAGGAGAATGGGAGGGTTAATAAAGGGAAGTTGACTA GTACTATGATTAGTACTCTTGGTAGGTTGGGGAAGATTGAGCATGCTGTGAGGCTGTTTGAGATAGGGAGGTATGAAGGG TATGGGAACACTGTGTATGCTTATTCTGCTATGATTAGTGCGTATGGGCGTAATGGCTGTTTTCCTGATGCCATTACATT GTTCAAGTCCATGAGAAGCTTGGGTTTGGAACCCAACTTGATTACCTATAATGCACTGATTGATGCAGGGGCCAAGGGGG GAGTGGAGTTTAACACAGTTGTTAAGTTTTTTGATGAAATGGTGGCCAATGGATTGGTGCCGGATAGGGTTACTTACAAT TCACTTATTTCAGCCTGTGTCCCCAAGGGCTTGTGGGAAGTGGCTCAGAATTTGTTGAGTGAAATGGAGCAGAAAGGGAT TGACCGGGATTTATACACATATAATACATATGTGGATGCGTTGTGTAAGGGTGGTAAGATGGATTTAGCCAAGAAGGTGA TGGAGGAGATGTCTGGTAGGAGAATTTGGCCCAATGTGGTAACTTATAGTACCATGATGGATGGTTATGCCAAGGCTGGC CTCTTAGAAGACGCCATAAGTTTGTATGATGAAATGAAGCGTCTGGCGGTCGGTTTTGACAGGGTGTCTTATAATACCAT GGTGGGGATTTATGCTAAGCTGGGTTTGCTGGAGGAGGCAATCTATGTATGTAAAGAGATGGAGAGCTGTGGAATAAAAA ATGATGTGGTAACTTATAATGCACTTTTGGGTGGGTTTGGGAAGCATGGCAAATATGATGATGTTAGTAGGATTTTTGCT GAGATGAAAGCCCGAAATATACATCCAAATACATTAACTTACTCAACAATGATTGATGTGTACACAAAAGGTGGAATGTA TAGGGAAGCAATGGATGCTTATAGAGAGTTCAAGCAGGAAAGGTTGGAGGCTGATGTTGTTTTCTATAGTGCACTAATTG ATGCCCTTTGCAAGAATGGTTTAGTGGAGTCTTCTATGGTGTTGCTTGATGCAATGATAGAGAAAGGAATTAGGCCCAAT GTTGTCACTTACAACTCCATAATTGATGCATTTGGTCAGCTGTCAGCTTTGGAATGTGGGGTTGATACTTCTGTTCAAGC CAATGAGCATCGAGTTGTACCTTCATCTTCTATGCTTATTGATGGTGCCCTCCAAAATCTAGCTATAGGTAAGGAGGATG ACCGGATCATGAAGATGTTTGAGCAACTTGCTGCTGAAAAATCAGGTCAAATAAAGAAGGACATGAGGGGCAGTCAGGAC AAGTTCTGCATCTTGTGGCTCTTTCGGAAAATGCATGAGATGGAAATCAAACCTAATGTTGTCACATTTTCTGCCATTTT GAATGCTTGCAGCAATTGCAAGTCCTTTGAAGATGCTTCAAAGCTGTTAGATGAGCTTCGCCTGTTTGACAACCAGGTGT ATGGGGTAGCCCATGGGCTACTCTTGGGTTACAGGGAACAGATATGGCTTCAGGCTCAATCTCTGTTTGATGAAATAAAA AGAATGGACTCTTCAACGGCATCTGCCTTTTATAATGCCCTGACAGATATGCTGTGGCACTTTGGTCAGAAACGTGGGGC TCAACTGGTCGTGCTTGAAGGGAAACGCCGCGAAGTGTGGAATGGTGACTGGTCTGAATCTTGTTTGGATCTGCACATGA TGTCTTGTGGTGCTGCTAGTGCTATGGTTCATGCATGGTTGCTCAAGATACGTTCTGTAGTGTTTGAAGGCTGTGAACTG CCCAAGATATTGAACATTTTAACTGGCTGGGGTAAGCACAGCAAGGTTGTTGGTGACGGCACTCTAAGAAAGGCTATTGA GGCACTCCTGAATGGCATGGGTTCACCCTTTAAGATTGCTGAATGTAACTTAGGAAGATTTATTTCTCCAGGGTACTTGG TAGCTGCCTGGTTGAAACAATCCAGCACACTGAATGTGCTTGTTTTGCATGATCTAAAAAATTCTGAACCTGCTGCTGAG CATAAGTTGCCAGCACTTTGCATTTAG
Protein sequence (LotjaGi1g1v0521700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTPTPPPNCSSVASRPTANNNNHSNHPHRHHKNHFKNQHQRHNNRLSASRYSSKPLPIAAAATDIGGAVGVGAGAGVG APLAGSGNAPPAFTSSLGSFMGARKSRLAPEFSGRRSTRFVAKMHSGSPRINPNNHPHTKAAEEALHCLLQAGNDAAALD TVLFNYEHRLWGCEDYIYMLKECGNNGRFLLATKCYDFAMWKENGRVNKGKLTSTMISTLGRLGKIEHAVRLFEIGRYEG YGNTVYAYSAMISAYGRNGCFPDAITLFKSMRSLGLEPNLITYNALIDAGAKGGVEFNTVVKFFDEMVANGLVPDRVTYN SLISACVPKGLWEVAQNLLSEMEQKGIDRDLYTYNTYVDALCKGGKMDLAKKVMEEMSGRRIWPNVVTYSTMMDGYAKAG LLEDAISLYDEMKRLAVGFDRVSYNTMVGIYAKLGLLEEAIYVCKEMESCGIKNDVVTYNALLGGFGKHGKYDDVSRIFA EMKARNIHPNTLTYSTMIDVYTKGGMYREAMDAYREFKQERLEADVVFYSALIDALCKNGLVESSMVLLDAMIEKGIRPN VVTYNSIIDAFGQLSALECGVDTSVQANEHRVVPSSSMLIDGALQNLAIGKEDDRIMKMFEQLAAEKSGQIKKDMRGSQD KFCILWLFRKMHEMEIKPNVVTFSAILNACSNCKSFEDASKLLDELRLFDNQVYGVAHGLLLGYREQIWLQAQSLFDEIK RMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRREVWNGDWSESCLDLHMMSCGAASAMVHAWLLKIRSVVFEGCEL PKILNILTGWGKHSKVVGDGTLRKAIEALLNGMGSPFKIAECNLGRFISPGYLVAAWLKQSSTLNVLVLHDLKNSEPAAE HKLPALCI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| MobiDBLite | 1 | 52 | 52 | - | – | |
| MobiDBLite | 26 | 45 | 20 | - | – | |
| Gene3D | 140 | 289 | 150 | 2.6E-20 | ||
| ProSiteProfiles | 209 | 243 | 35 | 6.04 | ||
| PANTHER | 210 | 448 | 239 | 5.7E-99 | – | |
| Pfam | 214 | 234 | 21 | 0.32 | ||
| ProSiteProfiles | 244 | 278 | 35 | 12.145 | ||
| Pfam | 244 | 289 | 46 | 1.9E-10 | ||
| TIGRFAM | 246 | 279 | 34 | 7.5E-9 | ||
| SUPERFAMILY | 246 | 554 | 309 | 2.6E-5 | ||
| ProSiteProfiles | 279 | 314 | 36 | 10.95 | ||
| TIGRFAM | 281 | 315 | 35 | 0.003 | ||
| Gene3D | 295 | 446 | 152 | 9.0E-46 | ||
| ProSiteProfiles | 315 | 349 | 35 | 11.323 | ||
| Pfam | 317 | 347 | 31 | 6.8E-7 | ||
| Pfam | 350 | 398 | 49 | 2.0E-13 | ||
| ProSiteProfiles | 350 | 384 | 35 | 11.827 | ||
| TIGRFAM | 352 | 382 | 31 | 3.3E-6 | ||
| ProSiteProfiles | 385 | 419 | 35 | 12.145 | ||
| TIGRFAM | 387 | 414 | 28 | 9.9E-9 | ||
| PANTHER | 420 | 599 | 180 | 5.7E-99 | – | |
| ProSiteProfiles | 420 | 454 | 35 | 11.038 | ||
| Pfam | 422 | 452 | 31 | 3.6E-7 | ||
| TIGRFAM | 422 | 455 | 34 | 2.2E-7 | ||
| Gene3D | 447 | 518 | 72 | 8.2E-19 | ||
| ProSiteProfiles | 455 | 489 | 35 | 13.088 | ||
| Pfam | 455 | 501 | 47 | 4.2E-15 | ||
| TIGRFAM | 457 | 491 | 35 | 8.7E-9 | ||
| ProSiteProfiles | 490 | 524 | 35 | 10.293 | ||
| TIGRFAM | 493 | 525 | 33 | 7.6E-6 | ||
| Gene3D | 519 | 582 | 64 | 9.3E-15 | ||
| ProSiteProfiles | 525 | 559 | 35 | 12.408 | ||
| Pfam | 525 | 571 | 47 | 3.3E-13 | ||
| TIGRFAM | 529 | 561 | 33 | 4.2E-7 | ||
| ProSiteProfiles | 560 | 594 | 35 | 7.454 | ||
| Gene3D | 637 | 787 | 151 | 1.2E-11 | ||
| Pfam | 646 | 671 | 26 | 7.0E-5 | ||
| ProSiteProfiles | 659 | 693 | 35 | 8.539 | ||
| SMART | 766 | 858 | 93 | 2.7E-17 | ||
| SUPERFAMILY | 767 | 847 | 81 | 5.49E-7 | ||
| ProSiteProfiles | 769 | 858 | 90 | 18.82 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0521700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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