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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0313400 |
| Transcript ID | LotjaGi2g1v0313400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metalloendoproteinase 1; TAIR: AT1G70170.1 matrix metalloproteinase; Swiss-Prot: sp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP; TrEMBL-Plants: tr|A0A151TFV0|A0A151TFV0_CAJCA Metalloendoproteinase 1; Found in the gene: LotjaGi2g1v0313400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78841681..78843085) extracted from Lotus japonicus Gifu genome v1.2.
TATAACTCATACCTTATCACACACTCTTCTTCACAATTTCTTGCACCCTTTAATTTGGCATTACGAAGAATCATCAACTA TGACCACTCATCACCACCGTGATCTCCTTTTCATCAGTTTGGCAATACTAGTAACAATCTGCGCCACTTTACCTTCAGTC GTCTCAGCTCGTTTCTTCTTCCCCAACACCACCTCCATCCCAAACCACGCGCCACCAGGCGCGTGGGACTCATACCGCAA CTTCACAGGCTGCAGCCCGGGAAAAACCTACGACGGCCTCTCCAACCTCAAGAATTACTTCCACCGCTTCGGCTACATTC CCGAAGCACCACCCTCCAACTTCACGGACGACTTCGACGACGCCTTAGAGTCCGCCGTACGCGCCTACCAGAAGAATTTC AACCTCAACATCACCGGCGAGCTCGACAACGCCACGCTCACCCAAATCGTCCGCCCCCGCTGCGGCGTCGCGGACATCAT CAACGGCACCACCTCAATGAACTCTGGCAAGTCCAACTCCAGCCTCCACACCGTCGCGCACTACTCCTTCTTTGAAGGAC AGCCTCGGTGGCCGGAGGGCACCGAGGAGCTCACCTACGCCTTCGACCCGGAAGAAAGCCTCGACAACATGACGAAAGCG GTGTTCGCGAGCGCTTTCTCCCGTTGGTCGGAGGTCACCACGATAACGTTCCGCGAAACGGAAACGTACTTCATGGCCGA TATCAAGATTGGATTCTACAGTGGGGACCACGGGGACGGGGAAGCATTCGACGGGGTTCTCGGGACACTCGCCCATGCTT TCTCCCCTACGAACGGGAGGTTTCATCTGGACAAAGCGGAGGACTGGGTGGTGAGCGGGGACGTGACGGAGGCGTCCCTC TCGAACGCGGTGGATTTGGAGTCTGTTGCGGTGCATGAGATAGGACATTTACTAGGATTAGCACACTCTTCCGTGCAAGA TGCTATCATGTACCCTTCTATCTCAGCGCGGACGAGGAAGGTGGTGCTTGATGAAGATGACATACAAGGGATTCAGGAGC TCTATGGTTCTAACCCGAACTTCACTGGAACTCCCTCCACCTCTTCGCGGGAGAGGGACTCTAGCGACGGTGGTAGCCAG GGTGGCTCCGTCTTTTTCTCCGTCGTCTTACTTGGATTTGCACTTTTCTTGCTGTAAGTTAGAATGAGTTTTGTAAGCTC ACACGGAGTAGGGGGCATATATTAGGTTTACATTTTTGCCCCGATATATACTGTATACTTTGTACGATACTACCATTGGC ATTCTTCATTCTTTATCCACGATTATGTAGTTTTTTTATTTATTTTTGTAAAGTTATTATATACAACTTTTTCTTGGATT GGAATTGTTCATTGAAAAATTCATACCTTTTATATAAGAGCTTTC
CDS sequence (LotjaGi2g1v0313400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCACTCATCACCACCGTGATCTCCTTTTCATCAGTTTGGCAATACTAGTAACAATCTGCGCCACTTTACCTTCAGT CGTCTCAGCTCGTTTCTTCTTCCCCAACACCACCTCCATCCCAAACCACGCGCCACCAGGCGCGTGGGACTCATACCGCA ACTTCACAGGCTGCAGCCCGGGAAAAACCTACGACGGCCTCTCCAACCTCAAGAATTACTTCCACCGCTTCGGCTACATT CCCGAAGCACCACCCTCCAACTTCACGGACGACTTCGACGACGCCTTAGAGTCCGCCGTACGCGCCTACCAGAAGAATTT CAACCTCAACATCACCGGCGAGCTCGACAACGCCACGCTCACCCAAATCGTCCGCCCCCGCTGCGGCGTCGCGGACATCA TCAACGGCACCACCTCAATGAACTCTGGCAAGTCCAACTCCAGCCTCCACACCGTCGCGCACTACTCCTTCTTTGAAGGA CAGCCTCGGTGGCCGGAGGGCACCGAGGAGCTCACCTACGCCTTCGACCCGGAAGAAAGCCTCGACAACATGACGAAAGC GGTGTTCGCGAGCGCTTTCTCCCGTTGGTCGGAGGTCACCACGATAACGTTCCGCGAAACGGAAACGTACTTCATGGCCG ATATCAAGATTGGATTCTACAGTGGGGACCACGGGGACGGGGAAGCATTCGACGGGGTTCTCGGGACACTCGCCCATGCT TTCTCCCCTACGAACGGGAGGTTTCATCTGGACAAAGCGGAGGACTGGGTGGTGAGCGGGGACGTGACGGAGGCGTCCCT CTCGAACGCGGTGGATTTGGAGTCTGTTGCGGTGCATGAGATAGGACATTTACTAGGATTAGCACACTCTTCCGTGCAAG ATGCTATCATGTACCCTTCTATCTCAGCGCGGACGAGGAAGGTGGTGCTTGATGAAGATGACATACAAGGGATTCAGGAG CTCTATGGTTCTAACCCGAACTTCACTGGAACTCCCTCCACCTCTTCGCGGGAGAGGGACTCTAGCGACGGTGGTAGCCA GGGTGGCTCCGTCTTTTTCTCCGTCGTCTTACTTGGATTTGCACTTTTCTTGCTGTAA
Protein sequence (LotjaGi2g1v0313400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTHHHRDLLFISLAILVTICATLPSVVSARFFFPNTTSIPNHAPPGAWDSYRNFTGCSPGKTYDGLSNLKNYFHRFGYI PEAPPSNFTDDFDDALESAVRAYQKNFNLNITGELDNATLTQIVRPRCGVADIINGTTSMNSGKSNSSLHTVAHYSFFEG QPRWPEGTEELTYAFDPEESLDNMTKAVFASAFSRWSEVTTITFRETETYFMADIKIGFYSGDHGDGEAFDGVLGTLAHA FSPTNGRFHLDKAEDWVVSGDVTEASLSNAVDLESVAVHEIGHLLGLAHSSVQDAIMYPSISARTRKVVLDEDDIQGIQE LYGSNPNFTGTPSTSSRERDSSDGGSQGGSVFFSVVLLGFALFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 8 | 351 | 344 | 2.4E-183 | – | |
| PANTHER | 8 | 351 | 344 | 2.4E-183 | – | |
| Phobius | 9 | 22 | 14 | - | – | |
| TMHMM | 9 | 28 | 20 | - | – | |
| Phobius | 23 | 30 | 8 | - | – | |
| Phobius | 31 | 343 | 313 | - | – | |
| SUPERFAMILY | 58 | 133 | 76 | 2.2E-17 | ||
| Gene3D | 58 | 329 | 272 | 6.9E-78 | ||
| Pfam | 67 | 122 | 56 | 3.9E-13 | ||
| PRINTS | 123 | 136 | 14 | 4.9E-37 | ||
| SUPERFAMILY | 158 | 327 | 170 | 1.35E-39 | – | |
| SMART | 160 | 324 | 165 | 4.4E-46 | ||
| Pfam | 168 | 323 | 156 | 4.0E-49 | ||
| CDD | 170 | 323 | 154 | 3.47154E-63 | ||
| PRINTS | 189 | 204 | 16 | 4.9E-37 | ||
| PRINTS | 213 | 241 | 29 | 4.9E-37 | ||
| PRINTS | 276 | 301 | 26 | 4.9E-37 | ||
| PRINTS | 310 | 323 | 14 | 4.9E-37 | ||
| MobiDBLite | 321 | 346 | 26 | - | – | |
| Phobius | 344 | 364 | 21 | - | – | |
| Phobius | 365 | 365 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Metallopeptidase activity | Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Extracellular matrix | A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. |
Expression pattern of LotjaGi2g1v0313400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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