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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0422500 |
| Transcript ID | LotjaGi2g1v0422500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metalloendoproteinase 1; TAIR: AT4G16640.1 Matrixin family protein; Swiss-Prot: sp|O23507|1MMP_ARATH Metalloendoproteinase 1-MMP; TrEMBL-Plants: tr|I1LGQ7|I1LGQ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0422500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92058818..92059897) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTCCGTTTTTCAGTAACTTTAACTTTTTCATCTTCTTCTTCTCCTTCCTTTTTCTTTGGCGCCCTTGCTTTCCCAC GAGAATCATACCAGAATCCGTAACCGTCATAACAACCCAAACTCGCAACGCCACGTGGCACGACTTCTCCAGGTTCCTCC ACGCCGAGAGAGGCAGCCACGTCACCGGCATGGCGGAGCTCAAAAGCTACTTCCACCGCTTCGGCTACCTCACCCTGCCG GAAACGCCGTCAAATTTCACAGACACCTTCGACACTCAGCTCGAGTCCGCTCTTCTCAGTTACCAAAAACGCCTCAGCTT GCCGATCACCGGAAAACTCGACAAGGACACCATCTCCGCCATCGTCGCTCCGCGGTGCGGCGTCTCCGACGCTGCCGCGG CGCACGGTCTGCACACCACCGGCCACTACGCTTACTTCGACGGCAAGCCGCGGTGGCTTCGCGGCACTCCGATGACTCTC ACGTACGCTTTCTCACCTTACAACATGATTAACAGGCTGAGCGTGAAGGAAATCCGAACGGTGTTTGAGCGCGCGTTCGC GCGGTGGGCGTCGGTGATTCCGGTGAGTTTCCAGGAGGTGGAGAAATTCGAATCGGCGGATATTCGGATCGGGTTTTACT CCGGCGACCACGGCGACGGAGAACCGTTTGACGGCGTGTTGGGGGTTTTAGGCCACGCGTTCTCCCCGCCGAACGGGAGG TTTCATCTGGATGCAGCGGAAGCGTGGTCCGTTGATTTCGATCATGATAAATCAAAGGTGGCCGTTGATTTGGAATCGGT GGCGACGCACGAGATAGGTCACGTGCTTGGTTTGGGTCATTCATCGGTAAAGGAAGCGGTGATGTACCCGAGTTTAAGCC CAAGAGGGAAGAAGGTTGACCTTAGAATTGATGACGTGGAAGGGGTTCAGGCCCTTTATGGCTCCAATCCCAACTTTAGT TTTAGTTCTTTTTTGCAGTCTGAAAATTCATACAATCATGCTGTTGGGTTGGAAACTAGTTTCTCTAAATGGACACTCTT TTGGGCCATTGCTTTCTTGCTATTACTTTTACACCCTTGA
CDS sequence (LotjaGi2g1v0422500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCCGTTTTTCAGTAACTTTAACTTTTTCATCTTCTTCTTCTCCTTCCTTTTTCTTTGGCGCCCTTGCTTTCCCAC GAGAATCATACCAGAATCCGTAACCGTCATAACAACCCAAACTCGCAACGCCACGTGGCACGACTTCTCCAGGTTCCTCC ACGCCGAGAGAGGCAGCCACGTCACCGGCATGGCGGAGCTCAAAAGCTACTTCCACCGCTTCGGCTACCTCACCCTGCCG GAAACGCCGTCAAATTTCACAGACACCTTCGACACTCAGCTCGAGTCCGCTCTTCTCAGTTACCAAAAACGCCTCAGCTT GCCGATCACCGGAAAACTCGACAAGGACACCATCTCCGCCATCGTCGCTCCGCGGTGCGGCGTCTCCGACGCTGCCGCGG CGCACGGTCTGCACACCACCGGCCACTACGCTTACTTCGACGGCAAGCCGCGGTGGCTTCGCGGCACTCCGATGACTCTC ACGTACGCTTTCTCACCTTACAACATGATTAACAGGCTGAGCGTGAAGGAAATCCGAACGGTGTTTGAGCGCGCGTTCGC GCGGTGGGCGTCGGTGATTCCGGTGAGTTTCCAGGAGGTGGAGAAATTCGAATCGGCGGATATTCGGATCGGGTTTTACT CCGGCGACCACGGCGACGGAGAACCGTTTGACGGCGTGTTGGGGGTTTTAGGCCACGCGTTCTCCCCGCCGAACGGGAGG TTTCATCTGGATGCAGCGGAAGCGTGGTCCGTTGATTTCGATCATGATAAATCAAAGGTGGCCGTTGATTTGGAATCGGT GGCGACGCACGAGATAGGTCACGTGCTTGGTTTGGGTCATTCATCGGTAAAGGAAGCGGTGATGTACCCGAGTTTAAGCC CAAGAGGGAAGAAGGTTGACCTTAGAATTGATGACGTGGAAGGGGTTCAGGCCCTTTATGGCTCCAATCCCAACTTTAGT TTTAGTTCTTTTTTGCAGTCTGAAAATTCATACAATCATGCTGTTGGGTTGGAAACTAGTTTCTCTAAATGGACACTCTT TTGGGCCATTGCTTTCTTGCTATTACTTTTACACCCTTGA
Protein sequence (LotjaGi2g1v0422500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPFFSNFNFFIFFFSFLFLWRPCFPTRIIPESVTVITTQTRNATWHDFSRFLHAERGSHVTGMAELKSYFHRFGYLTLP ETPSNFTDTFDTQLESALLSYQKRLSLPITGKLDKDTISAIVAPRCGVSDAAAAHGLHTTGHYAYFDGKPRWLRGTPMTL TYAFSPYNMINRLSVKEIRTVFERAFARWASVIPVSFQEVEKFESADIRIGFYSGDHGDGEPFDGVLGVLGHAFSPPNGR FHLDAAEAWSVDFDHDKSKVAVDLESVATHEIGHVLGLGHSSVKEAVMYPSLSPRGKKVDLRIDDVEGVQALYGSNPNFS FSSFLQSENSYNHAVGLETSFSKWTLFWAIAFLLLLLHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 11 | 356 | 346 | 2.8E-157 | – | |
| PANTHER | 11 | 356 | 346 | 2.8E-157 | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 340 | 314 | - | – | |
| Gene3D | 53 | 320 | 268 | 4.4E-77 | ||
| SUPERFAMILY | 54 | 130 | 77 | 7.06E-16 | ||
| Pfam | 65 | 120 | 56 | 6.7E-10 | ||
| PRINTS | 121 | 134 | 14 | 1.9E-36 | ||
| SMART | 148 | 315 | 168 | 4.9E-44 | ||
| SUPERFAMILY | 156 | 317 | 162 | 4.4E-41 | – | |
| Pfam | 158 | 314 | 157 | 2.6E-49 | ||
| CDD | 159 | 314 | 156 | 1.62154E-64 | ||
| PRINTS | 182 | 197 | 16 | 1.9E-36 | ||
| PRINTS | 206 | 234 | 29 | 1.9E-36 | ||
| PRINTS | 267 | 292 | 26 | 1.9E-36 | ||
| PRINTS | 301 | 314 | 14 | 1.9E-36 | ||
| Phobius | 341 | 357 | 17 | - | – | |
| Phobius | 358 | 359 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Metallopeptidase activity | Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Extracellular matrix | A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. |
Expression pattern of LotjaGi2g1v0422500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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