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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0130200 |
| Transcript ID | LotjaGi3g1v0130200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|I1KTT7|I1KTT7_SOYBN CTP synthase; Found in the gene: LotjaGi3g1v0130200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16266882..16272249) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTATGTGTTGGTGACTGGTGGTGTTGTCAGTGGACTTGGCAAAGGAGTCACTGCAAGTAGTATTGGACTACTCCT TCAGGCCTGTGGTCTTCGAGTTACTTCTATCAAGATTGGTATTTTACTTCTTCTTTGGATTCAAGTCTCACCCTTTCAAT CTCATTTTCCCTTTATGAGAATGCATTTTTATGCAATTTTATTGGTATTAATAAATTACCACTCCATCTCTTTCAGCCCT TTATGGGAATGCATTTTTATTGATTATGTAAGGTTTCATTTTAATGTAAATCTTCTTATTGAACAAGAAAAAAAGGGGGT TTTTCATGTATGATATACACTGGACTTGTTTGCTCTTTTTATTTAATTTATTCTTTCTTTGATTTTTCTTGACTGATTTT GGAGGATTCCTGATCCACGTGCATTTTGTTCATTTCTCATCAATGTTTTCTTCTTTTTTATTGATACAAAAAGGAGCAGT TCCAATTTTGTGCTCAGTATTTCTCTTCCAATCTAATGAGCAATCCAAATTCTGTCTTTCTATTTGTTTTAATTGTGTTT ACCTATCATTTACAGATCCTTACCTGAATACTGATGCCGGTACAATGTCTCCATTTGAGCACGGGGAGGTGTTTGTCTTA GATGATGGCGGTGAGGTAAAAAGATTAGTTTTTCTACCATGTAGATGTTGTCTTTCACACTTTTTGGTGACATGCCATCA ACCATGTTATGGACCTGCTTATGTTTTATTTTATCCCTCCTTTTCAATTTTTTTTCCATTTTACTTGAAAGTACTGCGAA ATATATCTTTTGTTTGTTCAGAGTTGAATAACTGCAATCTTTTAATCTAAGTTCTAGTTTGTAAATTATATTTTATTTTA TTTTTCTGTGTTGAAGGTTGACCTTGATCTTGGAAACTATGAGCGTTTCTTGGACCTCAAATTAACTCGTGACAATAATA TCACTACTGGAAAAATATATCAGGTGAACAAACTGCCTTTACATGTATACTTTGTTTTTTTTTCCTAGCCATGCCTCACG TTTCTTACTAGATTTTTATTATGAATGCTTTTAGTTTGTCATTGAGAAGGAGAGAAGAGGAGATTATCTTGGAAAGACTG TTCAGGTATGTCTAATCATTCTGATTTATCTTCTTTCAAAGGCATTTGTAATTGGAGTTGGTGCCTTGGTTTTTATTTTG TCTTTGCTTTTTTTGTAGGTTGTTCCACACATAACAGATGCCATCCAAGAGTGGATAGAGCGCGTAGCCAAGATACCAGT TGATGGAAAAGAAGGACCAGCTGATGTTTGTGTCATTGAATTGGGTGGGACTATAGGTAAGTTAATTTTGATATGATCTG AACTCTGGAACTCTATAACTTCTAAAATGTAAATCCTTTATTTAAATTGGTTCTTCTTAATGCAGGGGATATTGAGTCCA TGCCTTTTATTGAAGCGCTAGGCCAATTTTCATACCGCGTAGGTAATGCTCGTATGCTTTTCGGCTTTCAAACTTCGTAC CTTTGTAACTTATACAAACCAATTCAATAATTGGTAGTAAATCAATCTTGCTAATCATATATTTTTTTTTGTAGGCTCTG GCAACTTCTGTTTGGTTCATGTCAGCCTGGTTCCTATTCTCAATGTTGTTGGTGAACCGGTATATTCAAGAACATGTCAT CAGTACAACATTTCTATTGTATTTTCTTATTAGAAATAAATTAGAAACATAATTTATTCAAGCAATGCAAATATAAAAAT CAACTTATGTCTCTTTTAATTGGACCAGACTAAATAAACTTGTTGAGAAGTCCCACATGGACTAGAAATATGGCCAAGAT AACCTATATATGGGAAAGCAATCCTCACCTCTAAAGCTAGCTTTTGGGGTAGAGTTAGGTTTCCCAAATTCTAATAAAAT TGAATGGAGTGCTATTGTTGCGCCTTTGCTTGCAGTATGATCATTACTGATTTGAAGTTTTAACCTGCAGAAAACAAAAC CAACTCAGCACAGTGTTCGTCAACTTAGAGGATTAGGTTTGGTCCCTAATCTTCTTGCTTGTCGCTGTTCAAAGGTTTGT CTGTTTTGTTTTTTTACTTTTTGATATTCTGTTTGTTCCATGTAATAATGATAAATAATCCATGTTTTACTCATCTTTTT CACCAGGAACTTGATGACAATGTTAAGGCAAAACTTTCTCAATTTTGCCATGTGCCGGTAATATGCCATTAAGTTTACTA CTTTGACTTTGCTTATTACAAAATCCTTACATATATTCTTAAAACAAACTTTTGTATCTGCAGTTGTCAAACATTCTTAC TCTTCATGATGTTCCAAATATTTGGCACATTCCTTTGCTTTTGAAAGTAAGTAATTCTTCAGTATTTTTGAAACTCCATT CTATGAATGTCTTCTAGGATTGCTCGAACCTTATTATGACGTTCAATTTATTTAATTGTTCAATTTTCTGTAACTTTTCA TGAAAACTTGAATTGCATGCTTTTCCATGAAGTGGTTTGTAAGATCCTGATTTTTTTCTTTAACAAATAGGACCAGAAGG GGCATGAGGCGATCCTGAAAGCATTAGACCTGATAGGGTTTGTTTGACAAACTTATTCTTATTTTTATTTGGTGCATAAC CCTCTCCATTTCCCATGAAAACCCTGATTTATTAAGGTTTCATGTGCTGAAAATGTATTATTGGTTATGTTATAACTTAT AGGTGTTAGCTCACAAGTTTCTATCTTTAAGCTAGTGCCTTGTTTTTTGCAGTGTTGCTAAAGAGCCTAGTTTGAAGGAA TGGACCGCCAGGACAAAAGTTTATGACAAATGTCATGAAAGTGTGAGTACACAGATCTAAAGAAATAAAAATCATGTTAT GGATTGATACTGATATCTCTGTATAGTGGCAAGAGTTGAGCTTACAACTGTTATTCGTTTCACAGGTTAGAATTGCGATG GTAGGAAAATACACTGGCCTTTCAGATGCATATCTTTCTGTTCTGAAGGTAACACACTCTTAAGTTAGTGTTGCATAATA ATTTGCAATTACTCTGCATTTTCTGCCACTGCCACAGTTGCACCCCTAATGTCTGAATCTGTTAAAAAAAGGCATTTTGA ACTCTCTGATCAAAATATTAATATCTGATCCCCCAACATATACCACAGGCCAGTGTTATCAAATATCAGCCATGGCAGGT TCTTATTGCGGCTTTTTGGCCCACCGCCATGGCTGATATCCCGCCATTAACAACCTTGCCGCCGGTTAATATATTTGTTT TTTCATATAGGCACTTCTGCATGCTGCGGTTGCTCACAATCGTAAACTTATTGTGGACTGGGTTCCAGCTGGGGATCTTG AAGATGCTACTAACAAAGAGGTGGATCTTTCAGCGTACTGCATATGTTAGTTAACTTTCAGGTTTTAATTTATGTCAACC CCCTAACAAATAGTGTAACTGCAGGATCCTAACGCACATAAAACTGCTTGGAGTCTTTTGAAGGTATTTTTCTTACTCTA GGGTCTGAATGTCTTTCTTCAATTTTCCTTTTGTGATGCTAATATATATATATATATATATATATATATATATATATATA ACTGTATTAAATGCGAGATTTTTAACTGGTGTTCCGTAAATGGACTCTCCTTGCAGGGTGCAAATGGGGTTCTAGTTCCA GGAGGTTTTGGTGATAGAGGAGTGCAAGGGAAAATCCTTGCAGCTAAGTATGCTCGAGAACATAATGTTCCATATCTGGG CATTTGCTTGGGGATGCAAATTGCTGTGATTGAGTTTGCTCGATCTGTTCTGGGTCTGCACGATGCTACTAGCACAGAAT TTGATCCCGAAACGAAGACCCCTTGTGTCATATTTATGCCAGAAGTATGTTCTATGCTCGTGGACTGTATGAGTTAATTA TATTGTTCCTTTAGAGAACCTAGTTAAATTGGTTTGTATTATATGTAGGGCTCAAAGACACATATGGGAGGAACTATGCG TCTTGGTTCAAGGAGAACTTACTTCCAAGTTGCTAGCTGCAAATCTGCTAAATTGTAAGAATCTTAACCAAGCTCAAGCT TGCTTACACATAAACCTGCTTGTACACTTGGATTTGTTTCATTGAAGATATGAATCTTTACGGAACCTTTTTTTTTTATC ATATGTATAATACAATTTTAATTCAAAATGTTAACTTATGTATCTCCATTGCACATTATATTGCTTACCTTTGATCTATC ATTTGGAATTCCTGATAGGTATGGTAATGTAAGCTTTGTTGATGAGCGACATCGGCACAGATATGAGGTAAATTGAGTTT GTATGCAGGAACTTTCTCTAGGGTAGAGATGCAACCATAGTCACTAACAGTTATTTTTATGCTGTACAGGTTAATCCTGA CATGATATCAGAGCTAGAGAGTGCCGGTCTATCTTTTGTTGGAAAAGATGAAACTGAGCGGCGGATGGAGGTGTGTATTA ACTTGAAACTGCAATGGCTTGAATGTTAATATTTATCTGAAATTGATGATTATAATTTGGTAATCATGGGCATGTGTGCA GATAATAGAACTGCCTAGCCATCCCTTTTTTATTGGCGTTCAGTTTCACCCTGAGTTCAAGTCTAGACCAGGGAAACCTT CTCCACTCTTTTCAGGTATTTTTTTTCTTGACAGTCATTACCCATCTTTTTCAATTCAAATTCATTTATTAATGTTGTCA TTGCTATCACAAAATCTAATGATTGGTATTGATTAACCTTTTTCTGTGGGATGAACTATTATACTTTGCCCTTCAAATTT GTGACTGGGTTCCTGTTGGCATGAAATTCGCTGCATTGGCCGACCCTCTTTCCTTCTCTCTATCAGAAATCAGAATAAGT CATTATTGCATGATTAAGTGCATCACTTTTACAGCACGAGAACTAATGCGTAATGCAGTTTTAAATGACAAATTTTGCTT TTCTCTTTCCTCTCTGAATGATTAGAATTATCAACAAAATGTGTCCAGAAGATTCTATCTGTGTAACTTAGAATCATCTT TTGATTTAGCCAAAATGATGATGCAACAAATGTAGAAAGTATTGAGTCCTTTTGTGTTTAGAAAGTTATAACATTGCTCT CACTTTTACCCTAAATATATAATTGCCTCATTGACAAAACAGGATTAATAGCAGCAGCATGTGAAGAAAGGAGGACAGTT ATGGTGCAGCCAAGTAATGGCCATGCCAAGTTAGCTAGTGGAATACGCAATGGTCACTCGCCAATTCGTAAAGCACATCA AAATGGAAATGGCTTCAAATCATCCAAAGGTTCTTTAAACAGTGTATATGCCAATGGCAATGGGGTGTACGTGGAAGGTA GTTGTTAG
CDS sequence (LotjaGi3g1v0130200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTATGTGTTGGTGACTGGTGGTGTTGTCAGTGGACTTGGCAAAGGAGTCACTGCAAGTAGTATTGGACTACTCCT TCAGGCCTGTGGTCTTCGAGTTACTTCTATCAAGATTGATCCTTACCTGAATACTGATGCCGGTACAATGTCTCCATTTG AGCACGGGGAGGTGTTTGTCTTAGATGATGGCGGTGAGGTTGACCTTGATCTTGGAAACTATGAGCGTTTCTTGGACCTC AAATTAACTCGTGACAATAATATCACTACTGGAAAAATATATCAGTTTGTCATTGAGAAGGAGAGAAGAGGAGATTATCT TGGAAAGACTGTTCAGGTTGTTCCACACATAACAGATGCCATCCAAGAGTGGATAGAGCGCGTAGCCAAGATACCAGTTG ATGGAAAAGAAGGACCAGCTGATGTTTGTGTCATTGAATTGGGTGGGACTATAGGGGATATTGAGTCCATGCCTTTTATT GAAGCGCTAGGCCAATTTTCATACCGCGTAGGCTCTGGCAACTTCTGTTTGGTTCATGTCAGCCTGGTTCCTATTCTCAA TGTTGTTGGTGAACCGAAAACAAAACCAACTCAGCACAGTGTTCGTCAACTTAGAGGATTAGGTTTGGTCCCTAATCTTC TTGCTTGTCGCTGTTCAAAGGAACTTGATGACAATGTTAAGGCAAAACTTTCTCAATTTTGCCATGTGCCGTTGTCAAAC ATTCTTACTCTTCATGATGTTCCAAATATTTGGCACATTCCTTTGCTTTTGAAAGACCAGAAGGGGCATGAGGCGATCCT GAAAGCATTAGACCTGATAGGTGTTGCTAAAGAGCCTAGTTTGAAGGAATGGACCGCCAGGACAAAAGTTTATGACAAAT GTCATGAAAGTGTTAGAATTGCGATGGTAGGAAAATACACTGGCCTTTCAGATGCATATCTTTCTGTTCTGAAGGCACTT CTGCATGCTGCGGTTGCTCACAATCGTAAACTTATTGTGGACTGGGTTCCAGCTGGGGATCTTGAAGATGCTACTAACAA AGAGGATCCTAACGCACATAAAACTGCTTGGAGTCTTTTGAAGGGTGCAAATGGGGTTCTAGTTCCAGGAGGTTTTGGTG ATAGAGGAGTGCAAGGGAAAATCCTTGCAGCTAAGTATGCTCGAGAACATAATGTTCCATATCTGGGCATTTGCTTGGGG ATGCAAATTGCTGTGATTGAGTTTGCTCGATCTGTTCTGGGTCTGCACGATGCTACTAGCACAGAATTTGATCCCGAAAC GAAGACCCCTTGTGTCATATTTATGCCAGAAGGCTCAAAGACACATATGGGAGGAACTATGCGTCTTGGTTCAAGGAGAA CTTACTTCCAAGTTGCTAGCTGCAAATCTGCTAAATTGTATGGTAATGTAAGCTTTGTTGATGAGCGACATCGGCACAGA TATGAGGTTAATCCTGACATGATATCAGAGCTAGAGAGTGCCGGTCTATCTTTTGTTGGAAAAGATGAAACTGAGCGGCG GATGGAGATAATAGAACTGCCTAGCCATCCCTTTTTTATTGGCGTTCAGTTTCACCCTGAGTTCAAGTCTAGACCAGGGA AACCTTCTCCACTCTTTTCAGGATTAATAGCAGCAGCATGTGAAGAAAGGAGGACAGTTATGGTGCAGCCAAGTAATGGC CATGCCAAGTTAGCTAGTGGAATACGCAATGGTCACTCGCCAATTCGTAAAGCACATCAAAATGGAAATGGCTTCAAATC ATCCAAAGGTTCTTTAAACAGTGTATATGCCAATGGCAATGGGGTGTACGTGGAAGGTAGTTGTTAG
Protein sequence (LotjaGi3g1v0130200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYVLVTGGVVSGLGKGVTASSIGLLLQACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDL KLTRDNNITTGKIYQFVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTIGDIESMPFI EALGQFSYRVGSGNFCLVHVSLVPILNVVGEPKTKPTQHSVRQLRGLGLVPNLLACRCSKELDDNVKAKLSQFCHVPLSN ILTLHDVPNIWHIPLLLKDQKGHEAILKALDLIGVAKEPSLKEWTARTKVYDKCHESVRIAMVGKYTGLSDAYLSVLKAL LHAAVAHNRKLIVDWVPAGDLEDATNKEDPNAHKTAWSLLKGANGVLVPGGFGDRGVQGKILAAKYAREHNVPYLGICLG MQIAVIEFARSVLGLHDATSTEFDPETKTPCVIFMPEGSKTHMGGTMRLGSRRTYFQVASCKSAKLYGNVSFVDERHRHR YEVNPDMISELESAGLSFVGKDETERRMEIIELPSHPFFIGVQFHPEFKSRPGKPSPLFSGLIAAACEERRTVMVQPSNG HAKLASGIRNGHSPIRKAHQNGNGFKSSKGSLNSVYANGNGVYVEGSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 550 | 550 | 45.798 | ||
| PANTHER | 1 | 600 | 600 | 0.0 | ||
| Phobius | 1 | 3 | 3 | - | – | |
| SUPERFAMILY | 1 | 272 | 272 | 1.09E-120 | ||
| Gene3D | 1 | 291 | 291 | 4.5E-144 | – | |
| ProSiteProfiles | 1 | 30 | 30 | 5.0 | – | |
| PANTHER | 1 | 600 | 600 | 0.0 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| TIGRFAM | 1 | 545 | 545 | 1.8E-225 | ||
| CDD | 2 | 268 | 267 | 0.0 | – | |
| Pfam | 2 | 272 | 271 | 3.8E-123 | ||
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 608 | 588 | - | – | |
| Gene3D | 292 | 563 | 272 | 3.3E-115 | ||
| SUPERFAMILY | 297 | 550 | 254 | 8.99E-72 | ||
| CDD | 298 | 543 | 246 | 5.94087E-142 | ||
| ProSiteProfiles | 299 | 552 | 254 | 23.109 | ||
| Pfam | 309 | 544 | 236 | 1.6E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | CTP synthase activity | Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP. | ||
| Biological process | Pyrimidine nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. | ||
| Biological process | CTP biosynthetic process | The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate. |
Expression pattern of LotjaGi3g1v0130200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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