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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0300500 |
| Transcript ID | LotjaGi3g1v0300500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|A0A072TPJ2|A0A072TPJ2_MEDTR CTP synthase; Found in the gene: LotjaGi3g1v0300500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:62637715..62645182) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAGCTTCTGCTATAAGTCGAGAGGGTGGAAGCTAAGCTTCTTCGTTTGTTACCCGCCGCCTGAAACCAACACCAACA ACAACTCAACAACGTTGGAGTGGGAAAGGGAAAAGGGAAAACGCCGCTGTTTGTTTCAACAACGTTGCTCTTCTCTTCTT GCATGTTGCATTGTCTCTTCCCTTCCGACACTTCCCCATTCCTTCGTTGATTCACAAAATCGAACCAGCAAGGTACCCTT TTTCTCCCTCTTGTCCTTCTCAGATGAAACATTCAGAACCACCCTGTCATTGTTGTCTGCGCTATTTTTTCACATACCCA TCTTTTCTTTCATTGAGAGGTTTCGTTTTCCCCCTTTTTTGCATGTGATGTGATATCAATGTCAATGTCAGTGCTATCTA TCTGTTTTATCCTGTTATTTCAATCCCTATTATTGGTTGTGTTGTTGTTGTCATCTTTTTCATGGTAATTACACAGCACA CATGTTAGTGTTGGATCTCAAAAGTTGAAAGCTCTTTTTTAAAAAAAAAATCAGAGATTTTTGTAGAAATTGTTGTAGTA TTGTTTAAACTGAAATAACAATTTATTTAGAAAATTTAGATTATAGATTTTTTCAAGGTTAAACAAGTGGGAGTGATGCT TGCTGAGTTGCTGGTACTGAATCTTTGAGTGTGTCTTAGTGTGCTGAAATTGTTGTCATCTTTGCATGTTGCAGCAGAAG AGGATCTTACTTTGTCCAACAGCATTAGAAAAAACTGAGAAGGATGAAGTACGTGTTGGTGACAGGTGGTGTTGTTAGTG GACTTGGGAAAGGAGTCACTGCTAGCAGCATTGGGGTGCTCCTTCAGGCTTGTGGCTTTCGAGTTACTTCTATCAAAATT GGTATTTTCCTCTATTGAATTGAATTGAATTCTCAATCTTTTCCCCTTTTCCCCTTCAATTGTGAATGGATTGATTTTTA TGTATCTATGTTGGCAATTTGGCATAAAGGAAAGGACTAGCTTGCTCTTTTTGAGCTGATAAATGCAGTAGAAGCTTCGT CTGTCTTTCTTACTTGTGAAACAACTTCTACTATTATGCAAAATAATGCTTTTTGTTTTTAATTGTACTTGTTGTGTTTA ACCTTATCTATTACATGCAGATCCCTACCTGAACACTGATGCAGGGACAATGTCTCCTTTTGAGCATGGAGAGGTGTTTG TCTTGGATGATGGGGGTGAGGTAGGTGCAAATTATTTGTCCCTTTCCGTGGCTAAATTGGTTGCTTGAGATTATATTGAT TCCTTTCTTAATAACATAGTATCAGCCATTTTCATGTGATGCATCACTTATTTGTGTCATGGTGCCTCCTTTTGATTTCT CAACTCACTTAAACATACAACTTAGTGGGTGGTTTAGATACCAGTTGAGTGTGATTCTCAATTTGAACTGACTTACTTCT CAATCCATAAGAAAAGTTCATTTCACTTTTTGATGTGCTGCGTACTAACGTCTGTGTGCACTACTGTTTTATTTTGAAGT GCGTACTAACGTTTGTTTGCACAAGTGTCTTGATGTATATCCAAACATAGCCTTTTTTTGTTCTCCGAGTTCATGAGTCT AAGTGCAATTACAATAATAGGGTAATTGCATTCCCTTTTCATTCATGTTTTCAAATTTCTCTTTCTTGCTTGAAGGTTGA CCTTGATCTTGGAAACTATGAACGATTCTTGGACACCAAATTAACTCGCGACAATAACATCACTACAGGAAAAATATATC AGGTGGACAATACTCTTTTACTTCTTTTCAAATGTCTGCAAATTAATGTATTTTGTTTTTGTTTACTAGTTGTTTTTAGG GTTTACTAATGTTTTTTTGTTTTGAATGCATAACAGTCTGTTATTGAGAAGGAGAGGAGAGGAGATTATCTTGGAAAGAC TGTCCAGGTATGTTCTATCGTTCTGATTTTTCCCTCTGAATCAAATTGTTATGGTTGATTGTATCATGGTTTTGATTTCA ACTTTACTCTACTGCTAGGTTGTTCCACACGTTACTGATGCCATCCAAGAGTGGATAGAGCGTGTAGCACATATTCCAGT TGATGGAAAAGAAGGCCCAGCTGATGTTTGTGTCATTGAATTGGGTGGAACTATAGGTGAATTAGTATTTTGATTTTCGA GGATAACTTTTTAATTAATACTAAGATATAACAAGGTTGAAGCTGAAATTCAAACTTTTTTCTGCTTCGCAAATAGTGAC TGAACTTAGTATTTGATGTTAGCCGAAATGCAGAACAATGACAATGCTAGAACCTCGATATCATGAGACATTAATTTTAG AGTCATGAATGAGGCGAAGCTGAAATTCAAACTTGTTTCTGTTAGGCACATAGTGACTGAAAATAGTATTGATATTAGCA GAATTGCAGAACTATGAAAGTGCTAGAACCTCAATATTATGAGACATCAATTCTAAATAACTTTTTTTATGCAGGGGATA TCGAATCTATGCCTTTTATTGAAGCACTAGGCCAATTTTCCTACCGCGTAGGTAAGGTTTATCATCTTTGAGATCTCATA GAATACTGCATTAATATGAACAATTTTTTTGTTGGGTGTACTTTAGTGAAGCAGTTGATCATGTTTATCTTATTGCTTAT TGTTTCTAGGCTCTAGCAATTTCTGTTTGGTTCATGTCAGCCTGGTGCCTGTTCTCAATGTTGTTGGTGAACAGGTATAC TGCAAACTATATGTCATCTATGAACATTTCTATTATTTTATATATGCTTATGAGTTAAATAAAAATAAATTAGAATTGTT AGTAACTAGTAAGTATAAATTGGAATTTCATTGTTTCGTTTTCTATAAATGTTTCAACTTTATCTGCAGAAAACAAAACC AACTCAGCATAGTGTCCGCCAACTTAGAGGCTTAGGGATGATCCCAAATCTTCTTGCCTGTCGTAGTTCAAAGGTGCCTG CCTACCTCTTGCTCTTTTGCTTTTTCTGTAGGTTCCATGTAATAATGGTTGAAGTTTTTTGATTTATCCTTATCAGGAGC TTGATGACAATGTCAAGGCCAAGCTTGCTCAGTTTTGTCACATGCCGGTAAACATGATATAAATGTTGAAAATTTTCACG TTGCTTATCTTTATAGCCTTACACATATTCTCAAAGCAAACTTTTGTTTCTGCAGTCATTAAACATACTTACTCTCTATG ATGTTCCAAATATTTGGCACATTCCTTTACTATTAAGAGTAAGTAATTTTGTTATATTTTACGAAACTTCTTTCTGCTGT TGTCTTCTAGTATTACTAGAACCTAGTTTGTAAAATTTCTAAATTCCTTACCTTATAATCTTTTTTGCCTGGGTACTTGA ATTGCATTTTTTTTAATGTTATGTGATTCATTTGGTAACGATATGTTTTTCATTTTGGGTATTGATCTGTTACAAATAGG ACCAGAAGGCACACGAGGCTATCCTGAAAACATTAAACTTGCAAGGGTTTGTCTAACAAACTCATTCTTGTTTTGGTGTA AATCTTCCCTACCCCCCCTGAAAGAATCCTTATCCTATTCCATTGATGTTCTGTTACCTTAAAGTGATTCTGTCTTTCTG CTAATGGTCCTGTTAAATTACTTGCAGTGTTGCTACAGAGCCTAATTTTAAGGAGTGGATCACCAGAACAAAAGTTTATG ACAAATTTGATGGATCTGTGGGTTTCTGTACTCCTGATATAATGCATAATTAGATACTCAACTTAGAATACTGCGAAATA CCAATTGTTGACCTCACAATTATATGTTCTTTACAGGTTAGAATTGCTATGGTGGGAAAATATACAAGCCTTTCAGATGC TTACCTTTCTGTACTGAAGGTGTATTTTTTCTTCAATAATTTATTTTTGCATTCTTTGGAACTTTCATTTTTAGCACTTG AATTTGTTAAGAAAAGCACAGTGAACTGTCTGGTCTAAAGTACTAAACTATTGGTCTGTGACTCTTTGCATCATCTTTAT TTTGTAGCTTTTTTATAGTTTAATCAATAGTTTATGGTTTTTAAGGCTGATTTTATTGTCTCAATCATAGATACACACAG GATTGCTGATCTGCAGCATTATCATCAGTAATGAGTTGTAGTTTTTCATGTTTATGGTTTTTAATGCTGATTCTATTGTC TCAATTTCTTGCTACCTTTTACTTTACCCCATGAAATATGATGTAGTTTTTATGACCCATTTGCTTCGTTATCAGCTCTT CTTCCTCTTTTTCATGTAACAGGATTTAATTTTTGTAGTGAGAAGAAGGCCAGAGACTCCGTATTCCTTAAAATACATGT TTTAATTCACAAATGATTGATATGTATGACTTTGGGCATGTATTGAGTGTTATTTTTCCTGTGAACTACGATATTTCAAA AGCTTATATGCATGGTCTTTTGTGCAGGCACTTTTGCATGCTTCTATCACTCACAATCGTAAGCTTATTTTGGACTGGGT CCCTGCTGGGGATCTTGAAGATGCTACTTCTAAAGAGGTGATTACTGATCTTTATATTGTTTTGTATGTAACGGTAACTA TCACCTCATCCTAAACGTCTCATGGTTATTACTTGCAGGATCCTGATGCATACAAAGCTGCTTGGGATCTTTTGAAGGTT TTGCAATTTTCTACTATTTAAACTCTTTTGGACTGAATTCATCTCTTCACTTTCCCCATGTTAATACTGCATTGAATTCA AATGGACTTTTGTTGCAGGGTGCTAATGGGATTCTTGTTCCAGGAGGTTTTGGTGATAGAGGAGTGCAAGGGAAAATTCT TGCTGCTAAGTATGCTCGAGAAAACAGCGTTCCGTTTCTGGGCATTTGCTTGGGGATGCAAATTGCTGTCATTGAGTTTG CCAGATCTGTTCTTGGTCTTCATGATGCTAATAGCACAGAATTTGATCCGGAAGCCAAAAATCCTTGCGTCATATTTATG CCAGAAGTATATTGTCTGATAATTTCTTTTTACTTTAATGATAATATTCTTCCGTTTAGAAATTAATTTGTTTGAATTGT TTTCTGTTGATAGGTTTCAAAGACTCATATGGGGGGAACTATGCGTCTTGGTTCAAGGAGAACATACTTCCAAGTTGCTG ATTGCAAATCAGCTAAGTTGTAAGGACTATGATCCATGCTCTAATTTACTGATATACATACAAACATCTTGCATATGCTA TCATCTCCTAAGGGATGACACAATGATGAATCATGGATGTGTTTCAGTTCTTCAGTTTGTTTATGTGAAATTTTTTGTCA TCTTTAACCCAACAACAAAAGTCATCATCATACTTGTATAATAAAAATTAATTCAATAAGGTATCTTATGGTTCTTCATC AAACATTGATATCCAATATATTTTGTATAGGTATGGTAATGCAAGCTTTATTGATGAGAGACATCGGCATAGATACGAGG TAACTTGTGTTTTGTATTCAAAACTTCTTTTATGAGAAAAATATAAAAGATGTGTGATACTGTGATGTATTGTGCTGTAC AGGTTAATCCTGACATGATACCACAACTTGAGAAAGCTGGTCTGTCCTTTGTTGGAAAAGATGAAACTGGGAGGCGCATG GAGGTGCGTATTTGCAGGAAACCCTCATGGCATGGATCTTCAGAATTTGAGATTGCCACAAATTATTAACTATACTTTTT GCCATTATTTGCATGCTACACGTGCAGATAATTGAATTGCCTGGTCATCCTTTCTTCATTGGTGCTCAATTTCACCCTGA GTTCAAGTCAAGACCTGGAAAACCTTCTCCACTATTCTCAGGTATTATTTTTTCCAGAGTTACTTCATCTGTTTTAACTT GACTTCATCTATTGATGTTTTTCTTCCAAACATGAAATTATTGATGCACTTTCATAGCTTTTGTTATCCTATTTGTTTTC TTACATGGCTTTTGGCTATTATTGATGAACTTGTATGAATCCTCCTTATTAGTGTTGAATCATGCACAAATTTGATGCAT TGGCTAAGACTTGCCAACTGACCATTATTAAAAGAATTTAATCTTGTGTTAGTAAAATGTAAGTCAGGGTTTAGGGTTTA GGATAAATTCAAATTACTCAGTACTCAATACTCTACTAAAGCTAAAAACAATGAAAGCCTTTTCGGAAAAGCCTTTTCCC ACTTGATGGAGTCTGTCACATTAAGCACTCTGTTTTATAAACATGGTTAAGAATTCAAATCTCTTCATTATACTAGCCAC TGCCTGTCCATAAAATCTTTGGTTATATGCTATGCTTCTATTATTTATGTTTGCTACACATCTATGCATTATATTTCAAA TGTGATTATGTAACATGGAGGATCTATTTAACAATCATGCAGAAATACAATATGGTCATTTATGTGCTCTATTGATGGGT AAATTTTGGTCTATTAATTTTTGGCCTTTAATTCCATCAGAGTGTTGCATTAGTGTTTATTTATGTTTGTTTGATGCATT TTGTCTTATAGTCATTGAATTGCACTCATGAATGGCTCATTGTAACAGGATTAATAGCAGCAGCATGTGAGAGGACAGTT CTGCCGGTAAGCAACGGACATGCCAAGTTAACACCCAATGGCGTTTTAAATGGACACTCTCCTACGCAGAAAGAACATAA TGGAAATGGGTTCAAATCTTCCAATGGTTCCTCAAATGGAGTATATGCCAATGGCAATGGAAGCTGCTAATTAATCATCT ATGTTTTTTGGTTACAAGTTTGGTTTGATTTTCTCCAAAAACATGTTTTGTGCTCGGTTGGCCTGTACAGTTTGAGTGGA TAGATATCTTTAGGGGGGATATGTCTCCAGCGTGGAGCAAATTTTGAGCGTAACAACTTTTTAATTTCCAAGCCTGAAGG TTATGGATGATAATTTTCACAATGAATAAAAAATGCTGTAGCTTGTCATGGTTATTTTTCATAGGTACCATGATTTCCTC CCTCATTTTATCTTGAGCTGAGCTGTAATGTTGGATAATTGAGAGATATCGCATGGGATGGGGGAGACATATCAGAACAC ACTTGTAAGGGTTGTAGTTTAAGGGTGGACCAAAAAGATTTTACTCCATAGGTGCACCAATTTATAATTAACATATGCTT CAAACTGCTACTAGCACACATTCTATGACCACAGGCCAGCCTCCCTCTAGAACCTGTCCAGGGGAAGCTGTTTTTCGACG TGCTTCCGACATCATTGTCATCCTTGTCAGTCAGAGTCGTTCCTCCTTATCCTGCACTTTTTCATTCCTCCTAATCCGAT CATATTGAGCATCACAACCGTTGCTTGAATTATGTTATTGACTTTTTTATAGTAGATAATTCCTATTATATGTAATATTT ATTTTACCCTCTAAAGTGAGTCATTGTAGAGAAGTCAAATTCCTTCTTCTGAGGTTGGTTCGCGTGTCTTCCAAGAGCCT TCTGGCATGTCCTCCTTATAATTTGCTG
CDS sequence (LotjaGi3g1v0300500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTACGTGTTGGTGACAGGTGGTGTTGTTAGTGGACTTGGGAAAGGAGTCACTGCTAGCAGCATTGGGGTGCTCCT TCAGGCTTGTGGCTTTCGAGTTACTTCTATCAAAATTGATCCCTACCTGAACACTGATGCAGGGACAATGTCTCCTTTTG AGCATGGAGAGGTGTTTGTCTTGGATGATGGGGGTGAGGTTGACCTTGATCTTGGAAACTATGAACGATTCTTGGACACC AAATTAACTCGCGACAATAACATCACTACAGGAAAAATATATCAGTCTGTTATTGAGAAGGAGAGGAGAGGAGATTATCT TGGAAAGACTGTCCAGGTTGTTCCACACGTTACTGATGCCATCCAAGAGTGGATAGAGCGTGTAGCACATATTCCAGTTG ATGGAAAAGAAGGCCCAGCTGATGTTTGTGTCATTGAATTGGGTGGAACTATAGGGGATATCGAATCTATGCCTTTTATT GAAGCACTAGGCCAATTTTCCTACCGCGTAGGCTCTAGCAATTTCTGTTTGGTTCATGTCAGCCTGGTGCCTGTTCTCAA TGTTGTTGGTGAACAGAAAACAAAACCAACTCAGCATAGTGTCCGCCAACTTAGAGGCTTAGGGATGATCCCAAATCTTC TTGCCTGTCGTAGTTCAAAGGAGCTTGATGACAATGTCAAGGCCAAGCTTGCTCAGTTTTGTCACATGCCGTCATTAAAC ATACTTACTCTCTATGATGTTCCAAATATTTGGCACATTCCTTTACTATTAAGAGACCAGAAGGCACACGAGGCTATCCT GAAAACATTAAACTTGCAAGGTGTTGCTACAGAGCCTAATTTTAAGGAGTGGATCACCAGAACAAAAGTTTATGACAAAT TTGATGGATCTGTTAGAATTGCTATGGTGGGAAAATATACAAGCCTTTCAGATGCTTACCTTTCTGTACTGAAGGCACTT TTGCATGCTTCTATCACTCACAATCGTAAGCTTATTTTGGACTGGGTCCCTGCTGGGGATCTTGAAGATGCTACTTCTAA AGAGGATCCTGATGCATACAAAGCTGCTTGGGATCTTTTGAAGGGTGCTAATGGGATTCTTGTTCCAGGAGGTTTTGGTG ATAGAGGAGTGCAAGGGAAAATTCTTGCTGCTAAGTATGCTCGAGAAAACAGCGTTCCGTTTCTGGGCATTTGCTTGGGG ATGCAAATTGCTGTCATTGAGTTTGCCAGATCTGTTCTTGGTCTTCATGATGCTAATAGCACAGAATTTGATCCGGAAGC CAAAAATCCTTGCGTCATATTTATGCCAGAAGTTTCAAAGACTCATATGGGGGGAACTATGCGTCTTGGTTCAAGGAGAA CATACTTCCAAGTTGCTGATTGCAAATCAGCTAAGTTGTATGGTAATGCAAGCTTTATTGATGAGAGACATCGGCATAGA TACGAGGTTAATCCTGACATGATACCACAACTTGAGAAAGCTGGTCTGTCCTTTGTTGGAAAAGATGAAACTGGGAGGCG CATGGAGATAATTGAATTGCCTGGTCATCCTTTCTTCATTGGTGCTCAATTTCACCCTGAGTTCAAGTCAAGACCTGGAA AACCTTCTCCACTATTCTCAGGATTAATAGCAGCAGCATGTGAGAGGACAGTTCTGCCGGTAAGCAACGGACATGCCAAG TTAACACCCAATGGCGTTTTAAATGGACACTCTCCTACGCAGAAAGAACATAATGGAAATGGGTTCAAATCTTCCAATGG TTCCTCAAATGGAGTATATGCCAATGGCAATGGAAGCTGCTAA
Protein sequence (LotjaGi3g1v0300500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYVLVTGGVVSGLGKGVTASSIGVLLQACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDT KLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHVTDAIQEWIERVAHIPVDGKEGPADVCVIELGGTIGDIESMPFI EALGQFSYRVGSSNFCLVHVSLVPVLNVVGEQKTKPTQHSVRQLRGLGMIPNLLACRSSKELDDNVKAKLAQFCHMPSLN ILTLYDVPNIWHIPLLLRDQKAHEAILKTLNLQGVATEPNFKEWITRTKVYDKFDGSVRIAMVGKYTSLSDAYLSVLKAL LHASITHNRKLILDWVPAGDLEDATSKEDPDAYKAAWDLLKGANGILVPGGFGDRGVQGKILAAKYARENSVPFLGICLG MQIAVIEFARSVLGLHDANSTEFDPEAKNPCVIFMPEVSKTHMGGTMRLGSRRTYFQVADCKSAKLYGNASFIDERHRHR YEVNPDMIPQLEKAGLSFVGKDETGRRMEIIELPGHPFFIGAQFHPEFKSRPGKPSPLFSGLIAAACERTVLPVSNGHAK LTPNGVLNGHSPTQKEHNGNGFKSSNGSSNGVYANGNGSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| TIGRFAM | 1 | 545 | 545 | 2.1E-227 | ||
| PANTHER | 1 | 594 | 594 | 0.0 | ||
| ProSiteProfiles | 1 | 30 | 30 | 5.0 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 594 | 594 | 0.0 | – | |
| SUPERFAMILY | 1 | 272 | 272 | 9.15E-121 | ||
| Gene3D | 1 | 292 | 292 | 5.3E-144 | – | |
| Hamap | 1 | 550 | 550 | 46.203 | ||
| Pfam | 2 | 272 | 271 | 8.2E-124 | ||
| CDD | 2 | 268 | 267 | 0.0 | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 600 | 580 | - | – | |
| Gene3D | 296 | 557 | 262 | 6.7E-116 | ||
| SUPERFAMILY | 297 | 549 | 253 | 1.36E-73 | ||
| CDD | 298 | 543 | 246 | 3.57573E-143 | ||
| ProSiteProfiles | 299 | 552 | 254 | 21.866 | ||
| Pfam | 309 | 544 | 236 | 1.3E-58 | ||
| MobiDBLite | 563 | 600 | 38 | - | – | |
| MobiDBLite | 566 | 600 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | CTP synthase activity | Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP. | ||
| Biological process | Pyrimidine nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. | ||
| Biological process | CTP biosynthetic process | The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate. |
Expression pattern of LotjaGi3g1v0300500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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