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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0361300 |
Transcript ID | LotjaGi3g1v0361300.2 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Katanin p60 ATPase-containing subunit A1; TAIR: AT1G80350.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1; TrEMBL-Plants: tr|A0A0S3T0H0|A0A0S3T0H0_PHAAN Katanin p60 ATPase-containing subunit A1; Found in the gene: LotjaGi3g1v0361300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74447635..74451945) extracted from Lotus japonicus Gifu genome v1.2.
GTATAAAGTGAAAGTGTGACAAATGAAGTTTAGGAATAATTTTTTAAATTGAAAATCAAAAGCAAAAAGCAAAAATGAAT AGTTAGGGGAAAATGGGCTCTATAATAGTTCAAACTTCAAACTTTTGATATACAAGTGAATATTATGGGCTGGTGGGCCC ACCGGGCTCTCAAATTTCAAACCCACAAAGCCCATTGAAACCAGAACCACACTTCCTCCCATCGGCGTTTAAACGTGACC GTAGAGAACCGGGACCAGCACGGTGGTTGTTGGAGACGGAAGAGAATGGTTGGAAGTTCGTTGGGTGGGTTGCAAGAGCA CCTCAAGCTAGCCAGAGAGTACGCTCTCGAAGGACAGTATGACACCTCCATCATCTTCTTCGATGGTGCTGTTGCTCAGA TCAACAAGTACTTCTCTTTCTCCCTGTGCCTCCCATTTTTCAAATTTTTTTTTTCTCATTTTTTCAAATTTTTCTTAGTA AAGTTCGTCACTTTTCTTCATTACCTTTCATGGGTATCAATTGTTTTTGTGCTTTGATGCAACGTATTGTCATGGTTTTT ATTTATTTTTTGACATATTCATATGCAATGGATCTCGTATACCCTTTTAGAAACCAGTACTGTTGAATTACATGTCTTGA TGTGAATTCAAATTTGGAGATAATGATAGTTGAGACATGGTTTTATCAATTTGGTGTAAGCTGGATTTTTGACTAGTTCA ATTGAGGTTAGATATTGTGTAGTAGTAGTGATAGCATGTTTGGATTTATCTCTCTTTATTCAGAATCAATTTTGAAACTC AGAAGCTACTCATTTAAGTTTTGCTCCATAGTTGTATCAAGCTTTATAATCAATTATAGAAGGATTTCCTAACATACACT AAGTTGGTTTGGTTAATTGTACCTGGCTTGCATGAAGAAGTTTCAATCTCTTGTGATTTCAGGCACCTGAATTCTCTTGA TGACCCTTTACTTCGTTCGAAATGGATGAATGTTAAGAAAGCGCTATCTGAGGAAACAGAAGTAGTAAAGCAGTTAGATG CAGAGAGAAGTGCTTTTAAAAATAACCCCATTGGAAGACGCCCTCCCTCACCTCCGATATCTACTAAATCGTCATTCGTT TTTCAGCCATTAGATGAGTATCCTACGTCATCGAGTGGTCCGATGGATGATCCTGATGTGTGGAGGCCACCTAGTAGAGA TACCAGTAGAAGACCCACAAGGCCTGGCCAAATGAGTACTCGGAAGTCAGATGGGGCATGGGCTCGAGGTGCTACTCCAA GAGGGGGTGCGACTGGGCGTGGTGCAAAGGCCGGTGCAACAAGTAAGGTTAACACAGGGACCCGAGCATCAACTACCGGA AAGAAAAGTGGTGTTTCTGGGAAGGCTGGCAAGACAGATTCAGTTGTAAGTTTCGACATCTATGAGGAAGCCTGTTGGAT ACTGATTTTTGTATCACATTCAATTGTTTCTAGAAGTTGTTTTTAAGGATACTTTAGTTGGTTAACTCAACTGAATATTA GTTGTGTTTGATCTTATAACACCTTAATTAAATAAGTGCTTCTAGCATTCCATAGCCATTTGTCTCCTGTGTTAGTTTTC TTTCTTTTACTCTGCCTTACATTTTTTTAATTGTTTTAATGTATAGAACTATAGACTTGGTTTCCATATTTCCGTCACAT TGTGTGGCACCTTTGATTATCAGTTTACCCTACTTATGGTGTCTCTTATAGATAGTCTGAGAAACGTTTAACATCTTATA TTTCCTGTTATGTCCTTACAATTAAGTATGTAATTGACAGATTAGTGATGCTGAAGAAAGTAAGTCAAAGAAGTCACAAT ATGAAGGTCCTGATCCTGAGTTGGCTGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGAGGAT GTCGCTGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCCTATGGATGCCGGAATATTTCCAGGT AATGTTGAACTATTTTTTCTCTGAATTCCCATATAAATACTTGCCTAATGTTTACAATCCAGTTATATTTACTGATAATT TGGAATTGTAATGTTTATATGATACTCTGTATTTTTATCATGATAGTTAATTTTACACTCTCGTTTGACAATATGATGAA ATAATCTTGCGTACAATTATGTATTTAATTTAGATGTAAGTCCTATTTACAAAATTATGATTGCAAAATAAGTTCATGCT TTTTCTGTTACATCAACCTTGTACCACACTTTGAATTTTTAATTCAAGAACTGCTTATTTGATTGGCTTATTCTTATAGC AAGCTCTAATCAAATCCATGCATTTGAATCTCAGTAAATCAAATTGGTCTTGAGCTCATTATTTCTGTTCATGCAGGGAA TTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACT GAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCAACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCG GTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGACGAAATTGATTCTCTGTGCAATTCTAGGG GGTAAGCCTTTGTTGTTACATCCATTGCATGTAGTAGTGTTTGGAACCTGTTTATGTTTCCCTAAAACAATCTTTCATTT AATTCTCTTTTTCTGTGGCTTGTACATTCCTAGATTGTGTCTGGTTCACAAAGTAATGGAGATATAATGTTTTTCATCTA TTCTGACCTGCTGAGTTAACTCTTACTTTGCACCATCTCTTGGAGGTATGTTGAAGTCTGATTGAATGGACTTTTGTTTC CTCAGGGCATCTGGAGAGCACGAATCATCCAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAC TGCCACAAATGAAGATGGAAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCAC TGAGGTTTGTTTTTGTTTTTCTATGTTCTTTTCTTTACAGTTTATGTTGTAAGTGATTAGTTATCTGTGCCAGATATCTC TTTTAATATACTAGCCTAAACTTTCTGATCCAATTTAATGTTAATGCAATGCAGGAGAAGGCTGGAAAAGCGTATATATA TTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTAATTTGAAGACTGTTGAGGCAAGTTGTGATGTTTTG TTACTGTTTTGACTCTTGGTTATGTATGATTTTGACCCTTAAAAGTTTTGCTGTGTAATAGCTATAATTGATTTCTACAA CATAAATTATGTTAACTTGAGCTTTATCTATTAGAATCTATGTTACCCCCAAAAGAAAAGGAAAAGAGCATTTAACAAGA AATGATATTGTCTTGTGAATTAATTTTTTTATTGGAGGTGTTCAGTCACTGAACATACTGTGAGACTAGTATATAGAAAA GGCAGCAGATTCAAGGTTGCTAGAACTTGATTATTATAGCTGATGGTGCTTGTCTTGTTTCAGGTGGCCCCTGATGTCAA TATAGATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGTGATGCTTCCTTGAATG GTATGAGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCGAAGGATGATATTTCAAAGGATCCTGTT GCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTG GTTTCATGAATTTGGATCAGCTTAAAGAGACTTGGGAACGCCAACGACGGTAGTTTTGTTTTTAATTTTGTACTACCACT TTGGTTCTTTGTTGGGTGAGTTGTTTGTGTCTATTGTTTGTTGATATTTCATATGTTCCTTGAGGGGGTTCATTGGAGTA TTATGTTGTTGGAGGGATCTTCAATTGTTAATCTGTATCTGTGAACTTTGAATATCAATGTAATGTAATCTATATGCTAC TTTGAATGCTGTTATTCTCTCATAATATACTTACCTGTGTATTTTAACTTCCAACTTAGTGGTTTTCTTTGTAGCTAATG CCATAGAACTTCTGCTGTTGTTATGTAACAGTCTTCATGCATGTGTGCAAAGAAAACATGTCAAAAGGGGAATTGAAAAT ATTTGAAACTTATTGTGGTGATATTTTGCTAGAAGCTTGCATTGTTAAAATGGGATCAGAATCTAACTGGG
CDS sequence (LotjaGi3g1v0361300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGAAGTTCGTTGGGTGGGTTGCAAGAGCACCTCAAGCTAGCCAGAGAGTACGCTCTCGAAGGACAGTATGACAC CTCCATCATCTTCTTCGATGGTGCTGTTGCTCAGATCAACAAGCACCTGAATTCTCTTGATGACCCTTTACTTCGTTCGA AATGGATGAATGTTAAGAAAGCGCTATCTGAGGAAACAGAAGTAGTAAAGCAGTTAGATGCAGAGAGAAGTGCTTTTAAA AATAACCCCATTGGAAGACGCCCTCCCTCACCTCCGATATCTACTAAATCGTCATTCGTTTTTCAGCCATTAGATGAGTA TCCTACGTCATCGAGTGGTCCGATGGATGATCCTGATGTGTGGAGGCCACCTAGTAGAGATACCAGTAGAAGACCCACAA GGCCTGGCCAAATGAGTACTCGGAAGTCAGATGGGGCATGGGCTCGAGGTGCTACTCCAAGAGGGGGTGCGACTGGGCGT GGTGCAAAGGCCGGTGCAACAAGTAAGGTTAACACAGGGACCCGAGCATCAACTACCGGAAAGAAAAGTGGTGTTTCTGG GAAGGCTGGCAAGACAGATTCAGTTATTAGTGATGCTGAAGAAAGTAAGTCAAAGAAGTCACAATATGAAGGTCCTGATC CTGAGTTGGCTGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGAGGATGTCGCTGGGCTTACT GAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCCTATGGATGCCGGAATATTTCCAGGGAATTAGGAGACCATG GAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCA CTTTCTTTAATGTTTCTTCTGCAACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGAT CTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGACGAAATTGATTCTCTGTGCAATTCTAGGGGGGCATCTGGAGA GCACGAATCATCCAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATACTGCCACAAATGAAGATG GAAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAA AAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTAATTTGAAGACTGTTGAGGTGGC CCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGTGATG CTTCCTTGAATGGTATGAGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCGAAGGATGATATTTCA AAGGATCCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACG CCATGAGAAGTGGTTTCATGAATTTGGATCAGCTTAA
Protein sequence (LotjaGi3g1v0361300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGSSLGGLQEHLKLAREYALEGQYDTSIIFFDGAVAQINKHLNSLDDPLLRSKWMNVKKALSEETEVVKQLDAERSAFK NNPIGRRPPSPPISTKSSFVFQPLDEYPTSSSGPMDDPDVWRPPSRDTSRRPTRPGQMSTRKSDGAWARGATPRGGATGR GAKAGATSKVNTGTRASTTGKKSGVSGKAGKTDSVISDAEESKSKKSQYEGPDPELAEMLERDVLETSPGVRWEDVAGLT EAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFD LARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLE KRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDIS KDPVAMCDFEEALVKVQRSVSQADIERHEKWFHEFGSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 81 | 80 | 4.2E-29 | – | |
Hamap | 7 | 518 | 512 | 39.884 | ||
PANTHER | 15 | 517 | 503 | 2.7E-227 | – | |
PANTHER | 15 | 517 | 503 | 2.7E-227 | – | |
MobiDBLite | 79 | 98 | 20 | - | – | |
MobiDBLite | 103 | 216 | 114 | - | – | |
MobiDBLite | 165 | 185 | 21 | - | – | |
MobiDBLite | 194 | 216 | 23 | - | – | |
Gene3D | 228 | 511 | 284 | 2.0E-108 | – | |
SUPERFAMILY | 230 | 515 | 286 | 5.68E-61 | ||
CDD | 264 | 407 | 144 | 3.0959E-26 | – | |
SMART | 266 | 409 | 144 | 5.3E-17 | ||
Pfam | 270 | 407 | 138 | 7.1E-38 | ||
ProSitePatterns | 379 | 398 | 20 | - | ||
Gene3D | 408 | 496 | 89 | 2.0E-108 | – | |
Pfam | 429 | 467 | 39 | 7.2E-12 | ||
Pfam | 471 | 516 | 46 | 4.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. | ||
Molecular function | Microtubule-severing ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP. | ||
Biological process | Microtubule severing | The process in which a microtubule is broken down into smaller segments. Severing enzymes remove dimers from the middle of the filament to create new ends, unlike depolymerizing kinesins that use ATP to uncap microtubules at their ends |
Expression pattern of LotjaGi3g1v0361300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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