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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0361300 |
| Transcript ID | LotjaGi3g1v0361300.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Katanin p60 ATPase-containing subunit A1; TAIR: AT1G80350.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1; TrEMBL-Plants: tr|A0A0S3T0H0|A0A0S3T0H0_PHAAN Katanin p60 ATPase-containing subunit A1; Found in the gene: LotjaGi3g1v0361300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74448081..74451645) extracted from Lotus japonicus Gifu genome v1.2.
TTGGGTGGGTTGCAAGAGCACCTCAAGCTAGCCAGAGAGTACGCTCTCGAAGGACAGTATGACACCTCCATCATCTTCTT CGATGGTGCTGTTGCTCAGATCAACAAGTACTTCTCTTTCTCCCTGTGCCTCCCATTTTTCAAATTTTTTTTTTCTCATT TTTTCAAATTTTTCTTAGTAAAGTTCGTCACTTTTCTTCATTACCTTTCATGGGTATCAATTGTTTTTGTGCTTTGATGC AACGTATTGTCATGGTTTTTATTTATTTTTTGACATATTCATATGCAATGGATCTCGTATACCCTTTTAGAAACCAGTAC TGTTGAATTACATGTCTTGATGTGAATTCAAATTTGGAGATAATGATAGTTGAGACATGGTTTTATCAATTTGGTGTAAG CTGGATTTTTGACTAGTTCAATTGAGGTTAGATATTGTGTAGTAGTAGTGATAGCATGTTTGGATTTATCTCTCTTTATT CAGAATCAATTTTGAAACTCAGAAGCTACTCATTTAAGTTTTGCTCCATAGTTGTATCAAGCTTTATAATCAATTATAGA AGGATTTCCTAACATACACTAAGTTGGTTTGGTTAATTGTACCTGGCTTGCATGAAGAAGTTTCAATCTCTTGTGATTTC AGGCACCTGAATTCTCTTGATGACCCTTTACTTCGTTCGAAATGGATGAATGTTAAGAAAGCGCTATCTGAGGAAACAGA AGTAGTAAAGCAGTTAGATGCAGAGAGAAGTGCTTTTAAAAATAACCCCATTGGAAGACGCCCTCCCTCACCTCCGATAT CTACTAAATCGTCATTCGTTTTTCAGCCATTAGATGAGTATCCTACGTCATCGAGTGGTCCGATGGATGATCCTGATGTG TGGAGGCCACCTAGTAGAGATACCAGTAGAAGACCCACAAGGCCTGGCCAAATGAGTACTCGGAAGTCAGATGGGGCATG GGCTCGAGGTGCTACTCCAAGAGGGGGTGCGACTGGGCGTGGTGCAAAGGCCGGTGCAACAAGTAAGGTTAACACAGGGA CCCGAGCATCAACTACCGGAAAGAAAAGTGGTGTTTCTGGGAAGGCTGGCAAGACAGATTCAGTTGTAAGTTTCGACATC TATGAGGAAGCCTGTTGGATACTGATTTTTGTATCACATTCAATTGTTTCTAGAAGTTGTTTTTAAGGATACTTTAGTTG GTTAACTCAACTGAATATTAGTTGTGTTTGATCTTATAACACCTTAATTAAATAAGTGCTTCTAGCATTCCATAGCCATT TGTCTCCTGTGTTAGTTTTCTTTCTTTTACTCTGCCTTACATTTTTTTAATTGTTTTAATGTATAGAACTATAGACTTGG TTTCCATATTTCCGTCACATTGTGTGGCACCTTTGATTATCAGTTTACCCTACTTATGGTGTCTCTTATAGATAGTCTGA GAAACGTTTAACATCTTATATTTCCTGTTATGTCCTTACAATTAAGTATGTAATTGACAGATTAGTGATGCTGAAGAAAG TAAGTCAAAGAAGTCACAATATGAAGGTCCTGATCCTGAGTTGGCTGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTC CTGGAGTGAGATGGGAGGATGTCGCTGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCCTATGG ATGCCGGAATATTTCCAGGTAATGTTGAACTATTTTTTCTCTGAATTCCCATATAAATACTTGCCTAATGTTTACAATCC AGTTATATTTACTGATAATTTGGAATTGTAATGTTTATATGATACTCTGTATTTTTATCATGATAGTTAATTTTACACTC TCGTTTGACAATATGATGAAATAATCTTGCGTACAATTATGTATTTAATTTAGATGTAAGTCCTATTTACAAAATTATGA TTGCAAAATAAGTTCATGCTTTTTCTGTTACATCAACCTTGTACCACACTTTGAATTTTTAATTCAAGAACTGCTTATTT GATTGGCTTATTCTTATAGCAAGCTCTAATCAAATCCATGCATTTGAATCTCAGTAAATCAAATTGGTCTTGAGCTCATT ATTTCTGTTCATGCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTC TTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCAACTTTGGCTTCTAAATGGCGTGGA GAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGACGAAATTGA TTCTCTGTGCAATTCTAGGGGGTAAGCCTTTGTTGTTACATCCATTGCATGTAGTAGTGTTTGGAACCTGTTTATGTTTC CCTAAAACAATCTTTCATTTAATTCTCTTTTTCTGTGGCTTGTACATTCCTAGATTGTGTCTGGTTCACAAAGTAATGGA GATATAATGTTTTTCATCTATTCTGACCTGCTGAGTTAACTCTTACTTTGCACCATCTCTTGGAGGTATGTTGAAGTCTG ATTGAATGGACTTTTGTTTCCTCAGGGCATCTGGAGAGCACGAATCATCCAGAAGGGTGAAATCTGAACTTCTAGTTCAG GTTGATGGTGTAAGCAATACTGCCACAAATGAAGATGGAAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCC ATGGGACATAGATGAGGCACTGAGGTTTGTTTTTGTTTTTCTATGTTCTTTTCTTTACAGTTTATGTTGTAAGTGATTAG TTATCTGTGCCAGATATCTCTTTTAATATACTAGCCTAAACTTTCTGATCCAATTTAATGTTAATGCAATGCAGGAGAAG GCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTAATTTGAAGACTGTTG AGGCAAGTTGTGATGTTTTGTTACTGTTTTGACTCTTGGTTATGTATGATTTTGACCCTTAAAAGTTTTGCTGTGTAATA GCTATAATTGATTTCTACAACATAAATTATGTTAACTTGAGCTTTATCTATTAGAATCTATGTTACCCCCAAAAGAAAAG GAAAAGAGCATTTAACAAGAAATGATATTGTCTTGTGAATTAATTTTTTTATTGGAGGTGTTCAGTCACTGAACATACTG TGAGACTAGTATATAGAAAAGGCAGCAGATTCAAGGTTGCTAGAACTTGATTATTATAGCTGATGGTGCTTGTCTTGTTT CAGGTGGCCCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGATTTGACAAATGTCTG TCGTGATGCTTCCTTGAATGGTATGAGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCGAAGGATG ATATTTCAAAGGATCCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGAC ATTGAACGCCATGAGAAGTGGTTTCATGAATTTGGATCAGCTTAA
CDS sequence (LotjaGi3g1v0361300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGTTAAGAAAGCGCTATCTGAGGAAACAGAAGTAGTAAAGCAGTTAGATGCAGAGAGAAGTGCTTTTAAAAATAA CCCCATTGGAAGACGCCCTCCCTCACCTCCGATATCTACTAAATCGTCATTCGTTTTTCAGCCATTAGATGAGTATCCTA CGTCATCGAGTGGTCCGATGGATGATCCTGATGTGTGGAGGCCACCTAGTAGAGATACCAGTAGAAGACCCACAAGGCCT GGCCAAATGAGTACTCGGAAGTCAGATGGGGCATGGGCTCGAGGTGCTACTCCAAGAGGGGGTGCGACTGGGCGTGGTGC AAAGATTAGTGATGCTGAAGAAAGTAAGTCAAAGAAGTCACAATATGAAGGTCCTGATCCTGAGTTGGCTGAAATGCTTG AAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGAGGATGTCGCTGGGCTTACTGAAGCAAAAAGGCTTCTAGAA GAAGCTGTTGTGCTTCCCCTATGGATGCCGGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGG TCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTG CAACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCA AGTACAATTTTCATTGACGAAATTGATTCTCTGTGCAATTCTAGGGGGGCATCTGGAGAGCACGAATCATCCAGAAGGGT GAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATACTGCCACAAATGAAGATGGAAGCCGTAAAATAGTAATGG TCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTT CCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTAATTTGAAGACTGTTGAGGTGGCCCCTGATGTCAATATAGATGA AGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGAC GTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCGAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGC GATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTCATGA ATTTGGATCAGCTTAA
Protein sequence (LotjaGi3g1v0361300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVKKALSEETEVVKQLDAERSAFKNNPIGRRPPSPPISTKSSFVFQPLDEYPTSSSGPMDDPDVWRPPSRDTSRRPTRP GQMSTRKSDGAWARGATPRGGATGRGAKISDAEESKSKKSQYEGPDPELAEMLERDVLETSPGVRWEDVAGLTEAKRLLE EAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAP STIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPL PNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAMC DFEEALVKVQRSVSQADIERHEKWFHEFGSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 430 | 430 | 6.2E-210 | – | |
| Hamap | 1 | 431 | 431 | 36.294 | ||
| PANTHER | 1 | 430 | 430 | 6.2E-210 | – | |
| MobiDBLite | 18 | 128 | 111 | - | – | |
| MobiDBLite | 36 | 54 | 19 | - | – | |
| MobiDBLite | 109 | 128 | 20 | - | – | |
| Gene3D | 141 | 424 | 284 | 1.2E-108 | – | |
| SUPERFAMILY | 143 | 428 | 286 | 3.38E-61 | ||
| CDD | 177 | 320 | 144 | 1.55216E-26 | – | |
| SMART | 179 | 322 | 144 | 5.3E-17 | ||
| Pfam | 183 | 320 | 138 | 5.0E-38 | ||
| ProSitePatterns | 292 | 311 | 20 | - | ||
| Gene3D | 321 | 409 | 89 | 1.2E-108 | – | |
| Pfam | 342 | 380 | 39 | 5.6E-12 | ||
| Pfam | 384 | 429 | 46 | 3.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. | ||
| Molecular function | Microtubule-severing ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP. | ||
| Biological process | Microtubule severing | The process in which a microtubule is broken down into smaller segments. Severing enzymes remove dimers from the middle of the filament to create new ends, unlike depolymerizing kinesins that use ATP to uncap microtubules at their ends |
Expression pattern of LotjaGi3g1v0361300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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