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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0361300 |
Transcript ID | LotjaGi3g1v0361300.5 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Katanin p60 ATPase-containing subunit A1; TAIR: AT1G80350.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1; TrEMBL-Plants: tr|V7ASY5|V7ASY5_PHAVU Katanin p60 ATPase-containing subunit A1; Found in the gene: LotjaGi3g1v0361300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74448081..74451660) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTGGAAGTTCGTTGGGTGGGTTGCAAGAGCACCTCAAGCTAGCCAGAGAGTACGCTCTCGAAGGACAGTATGACAC CTCCATCATCTTCTTCGATGGTGCTGTTGCTCAGATCAACAAGTACTTCTCTTTCTCCCTGTGCCTCCCATTTTTCAAAT TTTTTTTTTCTCATTTTTTCAAATTTTTCTTAGTAAAGTTCGTCACTTTTCTTCATTACCTTTCATGGGTATCAATTGTT TTTGTGCTTTGATGCAACGTATTGTCATGGTTTTTATTTATTTTTTGACATATTCATATGCAATGGATCTCGTATACCCT TTTAGAAACCAGTACTGTTGAATTACATGTCTTGATGTGAATTCAAATTTGGAGATAATGATAGTTGAGACATGGTTTTA TCAATTTGGTGTAAGCTGGATTTTTGACTAGTTCAATTGAGGTTAGATATTGTGTAGTAGTAGTGATAGCATGTTTGGAT TTATCTCTCTTTATTCAGAATCAATTTTGAAACTCAGAAGCTACTCATTTAAGTTTTGCTCCATAGTTGTATCAAGCTTT ATAATCAATTATAGAAGGATTTCCTAACATACACTAAGTTGGTTTGGTTAATTGTACCTGGCTTGCATGAAGAAGTTTCA ATCTCTTGTGATTTCAGGCACCTGAATTCTCTTGATGACCCTTTACTTCGTTCGAAATGGATGAATGTTAAGAAAGCGCT ATCTGAGGAAACAGAAGTAGTAAAGCAGTTAGATGCAGAGAGAAGTGCTTTTAAAAATAACCCCATTGGAAGACGCCCTC CCTCACCTCCGATATCTACTAAATCGTCATTCGTTTTTCAGCCATTAGATGAGTATCCTACGTCATCGAGTGGTCCGATG GATGATCCTGATGTGTGGAGGCCACCTAGTAGAGATACCAGTAGAAGACCCACAAGGCCTGGCCAAATGAGTACTCGGAA GTCAGATGGGGCATGGGCTCGAGGTGCTACTCCAAGAGGGGGTGCGACTGGGCGTGGTGCAAAGGCCGGTGCAACAAGTA AGGTTAACACAGGGACCCGAGCATCAACTACCGGAAAGAAAAGTGGTGTTTCTGGGAAGGCTGGCAAGACAGATTCAGTT GTAAGTTTCGACATCTATGAGGAAGCCTGTTGGATACTGATTTTTGTATCACATTCAATTGTTTCTAGAAGTTGTTTTTA AGGATACTTTAGTTGGTTAACTCAACTGAATATTAGTTGTGTTTGATCTTATAACACCTTAATTAAATAAGTGCTTCTAG CATTCCATAGCCATTTGTCTCCTGTGTTAGTTTTCTTTCTTTTACTCTGCCTTACATTTTTTTAATTGTTTTAATGTATA GAACTATAGACTTGGTTTCCATATTTCCGTCACATTGTGTGGCACCTTTGATTATCAGTTTACCCTACTTATGGTGTCTC TTATAGATAGTCTGAGAAACGTTTAACATCTTATATTTCCTGTTATGTCCTTACAATTAAGTATGTAATTGACAGATTAG TGATGCTGAAGAAAGTAAGTCAAAGAAGTCACAATATGAAGGTCCTGATCCTGAGTTGGCTGAAATGCTTGAAAGGGATG TGTTAGAAACCTCTCCTGGAGTGAGATGGGAGGATGTCGCTGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTT GTGCTTCCCCTATGGATGCCGGAATATTTCCAGGTAATGTTGAACTATTTTTTCTCTGAATTCCCATATAAATACTTGCC TAATGTTTACAATCCAGTTATATTTACTGATAATTTGGAATTGTAATGTTTATATGATACTCTGTATTTTTATCATGATA GTTAATTTTACACTCTCGTTTGACAATATGATGAAATAATCTTGCGTACAATTATGTATTTAATTTAGATGTAAGTCCTA TTTACAAAATTATGATTGCAAAATAAGTTCATGCTTTTTCTGTTACATCAACCTTGTACCACACTTTGAATTTTTAATTC AAGAACTGCTTATTTGATTGGCTTATTCTTATAGCAAGCTCTAATCAAATCCATGCATTTGAATCTCAGTAAATCAAATT GGTCTTGAGCTCATTATTTCTGTTCATGCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAA CTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCAACTTTGGCT TCTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTT CATTGACGAAATTGATTCTCTGTGCAATTCTAGGGGGTAAGCCTTTGTTGTTACATCCATTGCATGTAGTAGTGTTTGGA ACCTGTTTATGTTTCCCTAAAACAATCTTTCATTTAATTCTCTTTTTCTGTGGCTTGTACATTCCTAGATTGTGTCTGGT TCACAAAGTAATGGAGATATAATGTTTTTCATCTATTCTGACCTGCTGAGTTAACTCTTACTTTGCACCATCTCTTGGAG GTATGTTGAAGTCTGATTGAATGGACTTTTGTTTCCTCAGGGCATCTGGAGAGCACGAATCATCCAGAAGGGTGAAATCT GAACTTCTAGTTCAGGTTGATGGTGTAAGCAATACTGCCACAAATGAAGATGGAAGCCGTAAAATAGTAATGGTCTTGGC AGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGTTTGTTTTTGTTTTTCTATGTTCTTTTCTTTACAGTTTAT GTTGTAAGTGATTAGTTATCTGTGCCAGATATCTCTTTTAATATACTAGCCTAAACTTTCTGATCCAATTTAATGTTAAT GCAATGCAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTA ATTTGAAGACTGTTGAGGCAAGTTGTGATGTTTTGTTACTGTTTTGACTCTTGGTTATGTATGATTTTGACCCTTAAAAG TTTTGCTGTGTAATAGCTATAATTGATTTCTACAACATAAATTATGTTAACTTGAGCTTTATCTATTAGAATCTATGTTA CCCCCAAAAGAAAAGGAAAAGAGCATTTAACAAGAAATGATATTGTCTTGTGAATTAATTTTTTTATTGGAGGTGTTCAG TCACTGAACATACTGTGAGACTAGTATATAGAAAAGGCAGCAGATTCAAGGTTGCTAGAACTTGATTATTATAGCTGATG GTGCTTGTCTTGTTTCAGGTGGCCCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGA TTTGACAAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGA ACATGTCGAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGT GTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTCATGAATTTGGATCAGCTTAA
CDS sequence (LotjaGi3g1v0361300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGAAGTTCGTTGGGTGGGTTGCAAGAGCACCTCAAGCTAGCCAGAGAGTACGCTCTCGAAGGACAGTATGACAC CTCCATCATCTTCTTCGATGGTGCTGTTGCTCAGATCAACAAGCACCTGAATTCTCTTGATGACCCTTTACTTCGTTCGA AATGGATGAATGTTAAGAAAGCGCTATCTGAGGAAACAGAAGTAGTAAAGCAGTTAGATGCAGAGAGAAGTGCTTTTAAA AATAACCCCATTGGAAGACGCCCTCCCTCACCTCCGATATCTACTAAATCGTCATTCGTTTTTCAGCCATTAGATGAGTA TCCTACGTCATCGAGTGGTCCGATGGATGATCCTGATGTGTGGAGGCCACCTAGTAGAGATACCAGTAGAAGACCCACAA GGCCTGGCCAAATGAGTACTCGGAAGTCAGATGGGGCATGGGCTCGAGGTGCTACTCCAAGAGGGGGTGCGACTGGGCGT GGTGCAAAGGCCGGTGCAACAAGTAAGGTTAACACAGGGACCCGAGCATCAACTACCGGAAAGAAAAGTGGTGTTTCTGG GAAGGCTGGCAAGACAGATTCAGTTATTAGTGATGCTGAAGAAAGTAAGTCAAAGAAGTCACAATATGAAGGTCCTGATC CTGAGTTGGCTGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGAGGATGTCGCTGGGCTTACT GAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCCTATGGATGCCGGAATATTTCCAGGGAATTAGGAGACCATG GAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCA CTTTCTTTAATGTTTCTTCTGCAACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGAT CTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGACGAAATTGATTCTCTGTGCAATTCTAGGGGGGCATCTGGAGA GCACGAATCATCCAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATACTGCCACAAATGAAGATG GAAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAA AAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTAATTTGAAGACTGTGGCCCCTGA TGTCAATATAGATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGTGATGCTTCCT TGAATGGTATGAGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCGAAGGATGATATTTCAAAGGAT CCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGA GAAGTGGTTTCATGAATTTGGATCAGCTTAA
Protein sequence (LotjaGi3g1v0361300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGSSLGGLQEHLKLAREYALEGQYDTSIIFFDGAVAQINKHLNSLDDPLLRSKWMNVKKALSEETEVVKQLDAERSAFK NNPIGRRPPSPPISTKSSFVFQPLDEYPTSSSGPMDDPDVWRPPSRDTSRRPTRPGQMSTRKSDGAWARGATPRGGATGR GAKAGATSKVNTGTRASTTGKKSGVSGKAGKTDSVISDAEESKSKKSQYEGPDPELAEMLERDVLETSPGVRWEDVAGLT EAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFD LARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLE KRIYIPLPNFESRKELIRINLKTVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKD PVAMCDFEEALVKVQRSVSQADIERHEKWFHEFGSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 81 | 80 | 4.2E-29 | – | |
Hamap | 7 | 516 | 510 | 39.351 | ||
PANTHER | 15 | 515 | 501 | 6.6E-225 | – | |
PANTHER | 15 | 515 | 501 | 6.6E-225 | – | |
MobiDBLite | 79 | 98 | 20 | - | – | |
MobiDBLite | 103 | 216 | 114 | - | – | |
MobiDBLite | 165 | 185 | 21 | - | – | |
MobiDBLite | 194 | 216 | 23 | - | – | |
SUPERFAMILY | 221 | 502 | 282 | 2.98E-58 | ||
Gene3D | 228 | 509 | 282 | 9.0E-108 | – | |
CDD | 264 | 407 | 144 | 3.06064E-26 | – | |
SMART | 266 | 409 | 144 | 5.3E-17 | ||
Pfam | 270 | 407 | 138 | 7.1E-38 | ||
ProSitePatterns | 379 | 398 | 20 | - | ||
Gene3D | 408 | 494 | 87 | 9.0E-108 | – | |
Pfam | 427 | 465 | 39 | 7.1E-12 | ||
Pfam | 469 | 514 | 46 | 4.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. | ||
Molecular function | Microtubule-severing ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP. | ||
Biological process | Microtubule severing | The process in which a microtubule is broken down into smaller segments. Severing enzymes remove dimers from the middle of the filament to create new ends, unlike depolymerizing kinesins that use ATP to uncap microtubules at their ends |
Expression pattern of LotjaGi3g1v0361300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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