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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0370000 |
| Transcript ID | LotjaGi3g1v0370000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G7IH34|G7IH34_MEDTR Translation elongation factor EF-2 subunit; Found in the gene: LotjaGi3g1v0370000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75657825..75660330) extracted from Lotus japonicus Gifu genome v1.2.
TCATTATTGAGATTTTTTTGTAGATATTACTACAGTATTTTAATTAGTTTCTGGAATTGTTGCAGGGAAGTCAACTCTCA CTGATTCTCTGGTGGCTGCTGCGGGTATTATTGCACAAGAGAATGCAGGAGATGTTAGGATGACAGATACCCGTGCAGAT GAAGCTGAGCGCGGTATAACAATCAAGTCCACTGGTATCTCTCTTTACTACGAGATGAGTGATGAGGATTTGAAGGACTA CAAGGGAGAACGTGAAGGGAATCAGTATCTGATTAATCTCATTGACTCACCCGGACATGTTGATTTCTCATCTGAGGTCA CTGCTGCACTTCGTATCACTGATGGAGCGCTTGTGGTGGTGGATTGTGTTGAGGGTGTTTGTGTCCAAACAGAGACTGTT CTGAGACAGGCCCTTGGAGAAAGGATTAGGCCTGTGTTGACTGTGAACAAGATGGATAGGTGCTTCCTTGAGTTGCAACT TGATGCAGAGGAGGCATACCTTACCTTTCAGAGGGTTATTGAGAGTGCAAATGTCATCATGGCTACCTATGAAGATGCTC TACTTGGTGATGTTCAGGTGTATCCTGAAAAGGGAACTGTTGCTTTCTCTGCTGGTTTACATGGATGGGCTTTTACCCTG ACCAATTTTGCAAAGATGTATGCTTCAAAGTTTGGAGTGGATGAGGCGAAGATGATGACCAGGCTTTGGGGTGAAAATTT CTTTGACCCTGCTACCAAAAAGTGGACCAACAAGCACACTGGAACTTCTACTTGTAAACGTGGGTTTGTCCAGTTCTGCT ATGAACCAATCAAGAAGATTATTGAACTTTGTATGAATGACCAGAAGGATAAGTTGTGGCCCATGTTGCCAAAGCTTGGG GTGAACTTGAAGTCAGAGGAGAAGGAGTTGACCGGAAAGGCTTTGATGAAGCGTGTCATGCAGAGCTGGCTCCCAGCAAG CAGTGCCCTTCTTGAGATGATGATATTTCATCTACCTTCCCCTGCCAAGGCTCAAAGATATCGCGTCGAGAATTTGTACG AGGGTCCCCTTGATGATCAATATGCTACTGCTATCAGAAACTGTGACCCTGAAGGACCTCTGATGCTTTATGTCTCAAAG ATGATTCCAGCACCTGATAAGGGAAGGTTTTTTGCTTTTGGCCGTGTCTTCTCTGGTAAGGTCTCAACTGGTATGAAGGT CAGAATCATGGGACCAAATTATGTCCCTGGGGAGAAGAAGGACCTATATGTCAAGAGTGTTCAGAGAACTGTCATTTGGA TGGGAAAGAAGCAAGAAACTGTTGAGCATGTCCCTTGTGGAAACACAGTTGCCATGGTGGGTTTGGATCAGTTTATTACC AAGAATGCCACTTTAACGAACGAGAAAGAAGTCGATGCACATCCTATTCGGGCCATGAAGTTTTCTGTGTCACCTGTGGT GAGTGTGGCTGTTACATGCAAGATTGCATCAGAGCTTCCTAAGCTTGTTGAAGGCCTGAAACGGTTAGCAAAGTCAGACC CCATGGTGGTGTGTACAATTTCAGAGACTGGAGAACACATCATAGCGGCTGCTGGTGAGCTGCATCTTGAAATCTGCTTG AAGGACTTGCAGGATGATTTCATGAATGGAGCAGAGATTACAAAATCTGAACCTATTGTCTCCTTCCGCGAAACCGTGTT TGAGAAATCCTGTCGTACCGTGATGAGCAAGTCACCTAACAAACACAACCGTCTGTACATTGAAGCAAGGCCAATGGAGG ATGGTCTTGCAGAGGCCATTGATGATGGAAAGATAGGACCAAGGGATGACCCCAAAACTCGTTCTAAGATACTGTCTGAA GAGTTTGGTTGGGACAAGGATCTTGCCAAGAAAATATGGTGCTTTGGTCCTGAGACAACTGGACCCAACATGGTGGTAGA TACATGCAAGGGTGTTCAGTATCTGAGTGAAATCAAGGACTCAGTGGTTGCTGGGTTTCAGATAGCATCAAAAGAAGGTC CATTGGCTGATGAGAACATGAGAGGAGTTTGCTTTGAGATTTGTGATGTTGTTCTGCATGCTGATGCCATTCACAGAGGA GGAGGGCAGATCATTCCAACTGCTAGAAGGGTGTTCTATGCTGCGACGCTGACGGCGAAGCCGAGACTTTTGGAGCCTGT GTATCTGGTAGAAATACAGTCACCAGAACAGGCTCTTGGTGGAATATATAGTGTTCTTAACCAGAGAAGAGGGCACGTGT TTGAGGAAATCCAGAGGCCTGGAACCCCACTTTACAATGTTAAGGCATACTTGCCTGTTATTGAGTCATTCAACTTCAAT GAATTACTGAGGCAACAAACTGCAGGACAAGCTTTCCCACAGTTGGTGTTTGATCACTGGGATATGGTGCCATCTGATCC ACTGGAACCTGGAACTCCTGCTGCTGTGCGTGTTGCTGAGATCAGGCGAAAGAAAGGCCTTAAAGAACAAATGACGCCTC TCTCTGAGTTTGAGGATAGGCTTTGA
CDS sequence (LotjaGi3g1v0370000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGATACCCGTGCAGATGAAGCTGAGCGCGGTATAACAATCAAGTCCACTGGTATCTCTCTTTACTACGAGATGAG TGATGAGGATTTGAAGGACTACAAGGGAGAACGTGAAGGGAATCAGTATCTGATTAATCTCATTGACTCACCCGGACATG TTGATTTCTCATCTGAGGTCACTGCTGCACTTCGTATCACTGATGGAGCGCTTGTGGTGGTGGATTGTGTTGAGGGTGTT TGTGTCCAAACAGAGACTGTTCTGAGACAGGCCCTTGGAGAAAGGATTAGGCCTGTGTTGACTGTGAACAAGATGGATAG GTGCTTCCTTGAGTTGCAACTTGATGCAGAGGAGGCATACCTTACCTTTCAGAGGGTTATTGAGAGTGCAAATGTCATCA TGGCTACCTATGAAGATGCTCTACTTGGTGATGTTCAGGTGTATCCTGAAAAGGGAACTGTTGCTTTCTCTGCTGGTTTA CATGGATGGGCTTTTACCCTGACCAATTTTGCAAAGATGTATGCTTCAAAGTTTGGAGTGGATGAGGCGAAGATGATGAC CAGGCTTTGGGGTGAAAATTTCTTTGACCCTGCTACCAAAAAGTGGACCAACAAGCACACTGGAACTTCTACTTGTAAAC GTGGGTTTGTCCAGTTCTGCTATGAACCAATCAAGAAGATTATTGAACTTTGTATGAATGACCAGAAGGATAAGTTGTGG CCCATGTTGCCAAAGCTTGGGGTGAACTTGAAGTCAGAGGAGAAGGAGTTGACCGGAAAGGCTTTGATGAAGCGTGTCAT GCAGAGCTGGCTCCCAGCAAGCAGTGCCCTTCTTGAGATGATGATATTTCATCTACCTTCCCCTGCCAAGGCTCAAAGAT ATCGCGTCGAGAATTTGTACGAGGGTCCCCTTGATGATCAATATGCTACTGCTATCAGAAACTGTGACCCTGAAGGACCT CTGATGCTTTATGTCTCAAAGATGATTCCAGCACCTGATAAGGGAAGGTTTTTTGCTTTTGGCCGTGTCTTCTCTGGTAA GGTCTCAACTGGTATGAAGGTCAGAATCATGGGACCAAATTATGTCCCTGGGGAGAAGAAGGACCTATATGTCAAGAGTG TTCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACTGTTGAGCATGTCCCTTGTGGAAACACAGTTGCCATGGTG GGTTTGGATCAGTTTATTACCAAGAATGCCACTTTAACGAACGAGAAAGAAGTCGATGCACATCCTATTCGGGCCATGAA GTTTTCTGTGTCACCTGTGGTGAGTGTGGCTGTTACATGCAAGATTGCATCAGAGCTTCCTAAGCTTGTTGAAGGCCTGA AACGGTTAGCAAAGTCAGACCCCATGGTGGTGTGTACAATTTCAGAGACTGGAGAACACATCATAGCGGCTGCTGGTGAG CTGCATCTTGAAATCTGCTTGAAGGACTTGCAGGATGATTTCATGAATGGAGCAGAGATTACAAAATCTGAACCTATTGT CTCCTTCCGCGAAACCGTGTTTGAGAAATCCTGTCGTACCGTGATGAGCAAGTCACCTAACAAACACAACCGTCTGTACA TTGAAGCAAGGCCAATGGAGGATGGTCTTGCAGAGGCCATTGATGATGGAAAGATAGGACCAAGGGATGACCCCAAAACT CGTTCTAAGATACTGTCTGAAGAGTTTGGTTGGGACAAGGATCTTGCCAAGAAAATATGGTGCTTTGGTCCTGAGACAAC TGGACCCAACATGGTGGTAGATACATGCAAGGGTGTTCAGTATCTGAGTGAAATCAAGGACTCAGTGGTTGCTGGGTTTC AGATAGCATCAAAAGAAGGTCCATTGGCTGATGAGAACATGAGAGGAGTTTGCTTTGAGATTTGTGATGTTGTTCTGCAT GCTGATGCCATTCACAGAGGAGGAGGGCAGATCATTCCAACTGCTAGAAGGGTGTTCTATGCTGCGACGCTGACGGCGAA GCCGAGACTTTTGGAGCCTGTGTATCTGGTAGAAATACAGTCACCAGAACAGGCTCTTGGTGGAATATATAGTGTTCTTA ACCAGAGAAGAGGGCACGTGTTTGAGGAAATCCAGAGGCCTGGAACCCCACTTTACAATGTTAAGGCATACTTGCCTGTT ATTGAGTCATTCAACTTCAATGAATTACTGAGGCAACAAACTGCAGGACAAGCTTTCCCACAGTTGGTGTTTGATCACTG GGATATGGTGCCATCTGATCCACTGGAACCTGGAACTCCTGCTGCTGTGCGTGTTGCTGAGATCAGGCGAAAGAAAGGCC TTAAAGAACAAATGACGCCTCTCTCTGAGTTTGAGGATAGGCTTTGA
Protein sequence (LotjaGi3g1v0370000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDTRADEAERGITIKSTGISLYYEMSDEDLKDYKGEREGNQYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGV CVQTETVLRQALGERIRPVLTVNKMDRCFLELQLDAEEAYLTFQRVIESANVIMATYEDALLGDVQVYPEKGTVAFSAGL HGWAFTLTNFAKMYASKFGVDEAKMMTRLWGENFFDPATKKWTNKHTGTSTCKRGFVQFCYEPIKKIIELCMNDQKDKLW PMLPKLGVNLKSEEKELTGKALMKRVMQSWLPASSALLEMMIFHLPSPAKAQRYRVENLYEGPLDDQYATAIRNCDPEGP LMLYVSKMIPAPDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEHVPCGNTVAMV GLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVSVAVTCKIASELPKLVEGLKRLAKSDPMVVCTISETGEHIIAAAGE LHLEICLKDLQDDFMNGAEITKSEPIVSFRETVFEKSCRTVMSKSPNKHNRLYIEARPMEDGLAEAIDDGKIGPRDDPKT RSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDTCKGVQYLSEIKDSVVAGFQIASKEGPLADENMRGVCFEICDVVLH ADAIHRGGGQIIPTARRVFYAATLTAKPRLLEPVYLVEIQSPEQALGGIYSVLNQRRGHVFEEIQRPGTPLYNVKAYLPV IESFNFNELLRQQTAGQAFPQLVFDHWDMVPSDPLEPGTPAAVRVAEIRRKKGLKEQMTPLSEFEDRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 289 | 289 | 42.766 | ||
| PANTHER | 1 | 788 | 788 | 0.0 | – | |
| PANTHER | 1 | 788 | 788 | 0.0 | – | |
| Pfam | 2 | 287 | 286 | 1.9E-46 | ||
| SUPERFAMILY | 2 | 286 | 285 | 2.7E-86 | ||
| ProSitePatterns | 3 | 18 | 16 | - | ||
| Gene3D | 7 | 287 | 281 | 7.1E-172 | – | |
| PRINTS | 10 | 18 | 9 | 4.0E-7 | ||
| Gene3D | 12 | 414 | 403 | 7.1E-172 | – | |
| PRINTS | 46 | 56 | 11 | 4.0E-7 | ||
| PRINTS | 62 | 73 | 12 | 4.0E-7 | ||
| PRINTS | 98 | 107 | 10 | 4.0E-7 | ||
| Gene3D | 167 | 271 | 105 | 7.1E-172 | – | |
| SUPERFAMILY | 287 | 421 | 135 | 5.52E-42 | ||
| CDD | 320 | 415 | 96 | 4.12986E-43 | – | |
| Pfam | 339 | 412 | 74 | 4.6E-12 | ||
| SUPERFAMILY | 429 | 505 | 77 | 4.32E-17 | ||
| Gene3D | 430 | 508 | 79 | 5.0E-31 | – | |
| Pfam | 431 | 495 | 65 | 3.3E-11 | ||
| CDD | 440 | 504 | 65 | 1.9637E-29 | – | |
| CDD | 504 | 676 | 173 | 8.01109E-100 | – | |
| SUPERFAMILY | 507 | 671 | 165 | 3.03E-66 | ||
| Gene3D | 510 | 774 | 265 | 3.9E-121 | – | |
| Gene3D | 516 | 778 | 263 | 3.9E-121 | ||
| SMART | 550 | 667 | 118 | 1.8E-26 | ||
| Pfam | 555 | 667 | 113 | 3.3E-31 | ||
| Pfam | 669 | 755 | 87 | 1.3E-19 | ||
| SMART | 669 | 758 | 90 | 6.8E-18 | ||
| SUPERFAMILY | 672 | 781 | 110 | 2.93E-28 | ||
| CDD | 672 | 751 | 80 | 3.06901E-48 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0370000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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