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LotjaGi3g1v0433200.1

Overview

Field Value
Gene ID LotjaGi3g1v0433200
Transcript ID LotjaGi3g1v0433200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent DNA helicase 2 subunit KU80; TAIR: AT1G48050.1 Ku80 family protein; Swiss-Prot: sp|Q9FQ09|KU80_ARATH ATP-dependent DNA helicase 2 subunit KU80; TrEMBL-Plants: tr|G7JDE1|G7JDE1_MEDTR ATP-dependent DNA helicase 2 subunit KU80; Found in the gene: LotjaGi3g1v0433200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:84477405..84483721) extracted from Lotus japonicus Gifu genome v1.2.

CTCTTTGTTTATCTTCTCTTTCCTCTCTTTCTCCCCTAAACTTTTTCTTTCCCTCCTCTTTCCATTGAATCAAATGAGAG CATAAGCGTGTGGGTAGTGGGACCTTCGTGAGACTTGGGTATTTAAGCTCACCTTATGAAGCGGGAAGTTGAAAGAGCCA GCATACTCCATCTTCTTCTGCAAGTTTGAGCTCTCTCTCTCTTCTTTTCCATTCATGGCTCGTAACAAGGTTCGATTTTT TCTTCCTTTCTCAATACCCTTTTGCATCCCTTATCTTCACTCATCTGGGTTTAGGGTTTTACTTCTAATTTACTCATTTT CTGCTGAAACCCCCATTTCCTTGTGAATGCAAAAATGTATTTTTTCTGTAAAAAACAGGAAGCGTTGCTTTTGCTGCTTG ATGTTGGCCCAACCATGCACTCCGTTCTTCCTGAAATTGAGAAAGTGACTTCCTTGCTTGTACAGAAGAAGGTTTTGATT TTTGAATTTGTTATCATAATCTTGTGTTAGGTTTTGCTTACTTTGAGCTTCATTAACATGATTCTTTATGAATATAATAT AATGTGCAGCTGATCTATAACAAATATGATGAAGTGGGAATTGTCTTATTTGGAACAGAAGGTACTTACTTACTTTAATC TTTCTGATGCAGCAAATATGCAATGCATGATGGATTGATGGTGGCTTGGTGTTTATTGGTTTCATTGATGCACTACTTGT TACTTGTTAGCTATTTGGAATTCAGTAATTGATAGAAATCACTGGCTCTTCCTTGATTATCTTCTACTTTAGCTGACTAA GTAGAGTCTTTGCTCGGTTGACTACACTAATGTTTTCCATTTTGATTTCCTATTGTTACTGTAACTATTACTGCAATGTT TCACTTTGCTATTTATTTCCTTTGATTCAGTCATTTTTCAATGTTTTGAAGGAGTGCTTTGAGGAGTTTAGGATTAAAAG AAAATACTATTCAAGCTTGAAAGGGGGAAATTTTACTGTACAACATTACGAATACTTGCTATTATATTGTATGATACTAA ACTTGAGGGGTTAATTGGTCAAGTAAAAAATTAGCTTAATGTTATAGAGATGACAGTGTTAAGAGGTATAAGAGGTGTCA TACAAGATAATTAGAAATAAGTGCATTAAAGGAAATTTTGTGGGTAACATCTATTGTGGAAAAGATGGTAAACTCTTACC TTAGGTTGTTTGGGCATGTGCAGAGAAGACTTGTAAAAGCCTTAGTAAGGAGAGTAAATTAGATGGAGGCTAGCCTAATA GAAGTAGAGGGAAACCTAGAAAACTGTAGGCCAAAGTCATAGATTTGAATGGTTTTATCTCTGGGCATGATTTACGAATT ACGATATGATATTATTGCTCTGTTTATACATGTAGTTGACTTCTCCGCCTAGTGGAAAAAGGCATTTGTTGTTGTTGGAG TTTGATTAAAGCCCTCTCTCACCTATGCTTATGTTGTCATTTTTCAGACACTGACAATGAACTAACTACAGAAGTGGGTG GATATGACCATGTTGTGGTTTTGAAAAATATTAAAGTGGTCGATGGAGATATTGTTGAGGCCTTGCAACAACTGCCTCGA GGAACCTCTAATGGTGATTGTATCCACAAAGTTCATGGTTTCATGTTCTGGAAAGTTTTACTTGTTAACTCTTAGTTTAT TATATAATATATCTTAAATCATCTTCTCGTCAAACAAAATTATATGCTTTTGAGTTTGACCTACTTTGAAATATTCGTAC TACTTGTTTTACTATACCATCTTCATTAAAAGTATCCCTATTTGCAAGTTCTTTACTTTTATACTATAAGATACTTTAGA TTTCTTTTTCTGGTTTCTGCAGCTTATTCTCAATGCCATCTATCTTTAATTTTAATTCCTTCTGTTTGCTTTTACAATAA TTGGTTATATATATGTAATTCACTAATTCTTTACATCGAAATCTCATGTTCCATTATACAGTTTAATTGATTATTCAAAA GTAACACTTTATTTCACTTAATTTTTGTCGATGATGCTTTTCTTGTATGATTGGTGTAACGACTTAATATTTTCCTGAAC ACCATTCTGTCTCATTAAAATTTAAGGGATATAATCTGTAGCAATTTTTTTTAAGTTGAACTATTAAACTTTCCAAAAGG AAGTTGTTTCTTTCCTCCTGTCGTGGGTTTTACCTGATTAGCTTTCTTTTACCCTTTTCTGTTTACCTTGACTTTGATGT TAGTTCTTGATGCTGTCATTGTTGGCTTGGATATGTTAATAAAAAAGTTTGGAGAAACTAATAAAGGGAAGAAACGTGTG TGTCTTATTACAAATGCACAATGTCCAATAAAATATCCTTTTGAAGGAACAAAAGAAGAGCAAGTTACCGCCATTGCTAA GCAAATGACCATCCATGGTATGAAAATGGAAAGTATAATTCTCAGAGGAAAGATTAGTCAAGATGGAAACAAGAGAACAA TGGATGAGAATGATCGTTTATTAAATATTTTTGCTGAGGAAACATCAACGAGATTGTTGTATGTGGAGAATCCAATTTCT TTGTTTGGTGCTATTAAAACCCGGACTATAACTCCAGTTACAGTTTTCAGAGGGGATCTTGAACTCAGCCCAAAACTGAG GATTAAGGTGAGATCTATGGTATGATATATGAATTTATTTTCTAGGGCCATGACAAATGTTATTTTCAGGTGCTGTTAGT TTCATTTTTTGGACATAACCCACTGTAGCTGATAAATCATCCATCATTTTGCGTGTTGCTCATTTCCTAATCCTATGTTG TTGTTTTCATAAAATTCTCAACTTTGCAATGCTGGGATTATTTTACCTCCATATTCAGTCCTACATAATATTGCAGGTCT CATAGTTGTACAGTACAAGTTTCCTTTTAGCTTGATTGGTTTTTTAAGGCTTAAGTTTTGTCACAAATTACACTGAAACA TTTCTTCCATTTCATCTATCCTACTTCGGTCCACCGTTTGACATTTCCCTCTATCTCCCCCACCCACTATAGATCCAAAA TACTTAAATCATGAGATTTGTGGTATGGTATCCTAGAATAATAGATATAATTTATTTTGGAGTTATGTGTATCAAGCTGT ATGCAAGAATTTATAGTTGAACTTGAACAATACTAGTTTATTTTGTCTATATTTTTCTTTCTTCTCTGTTTAGCAAGCAG ATAATCCATGCAACTGTTTTAGTTATTCAGTTGGTTTTTTAAATAAAACATTTTTAGTAACAAAATTTATATTGGTTCAT GAAAACTATAATCAGGTAATGGTATACAAGAAAACAGCAGAAGAGAAATTTCCAACTCTGAAGAGATATTCTGATAAGGC TCCTCTAAATGATAAATATGCCACACATGAAGTCAAAGTTGAATATGAATACAAGAGTTCTGAAGATCCTGATAAAGTTA TCCCTCCAGATCAAAGAATTAAAGGTTATCGTTATGGGCCTCAAATAGTTCCTATATCCTCTACTGAGTGGGAGGCTGTT AAGTTCAAAACAGAAAAGGGTGTAAAGCTTTTGGGATTTACTGATTCTTCGAATGTATTGAGGTAAGACAAGCTTTAATA GAATATATTTTTATTCAAATTTGTCAATGGAGGTTTGCTATGCTGACTCATTATTCATCTTCCTTCTTTCTGAAAATCTG CCTTAAAGACACCAGTACATGAAAGATGTCTATGTTTTCATAGCTGAACCTGAAAATACCAAAGCCATACTTGCAGTTTC TGCACTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCGATTTTACGGTGTGTATGGAGGCAGGGACAAGCAAATGTTG TCATTGGGGTCTTGACACCCAATTTATCTGACGGAGATAATATTGTAGGCCTTTCTTGTCTAAGTTTCTTGTATTTTTTA TTGGTTTACCTTCACTGGCTTCAGTTCTAGCTCTTTATTTTTAATGGTCATTAATTTCTTGGTTCTATGATAATGCTGTG CAGCCTGATTCATTTTATTTCAATGTACTTCCTTTTGCTGAGGATGTACGAGAGTTTCAATTCTCCTCTTTCACCAATTT TCCAGCATCGTGTCAGCCAAATGAACAACAGCTAGAGTCAGCAGCTAACTTGGTAAAAATGCTTGATCTTGCACCACAAG GGAAAGAGGAAGTTTTACGACCTGACTTTACTCCGAATCCAGTCCTGGAGGTACATATTCTATCAATTTTTGTTCCTGAC ATGGGTTTTCTGTGTCTTATGATTGTTACTTGACCTGTGAATCTGTATTTAGAATTCCTTATTGGGTACAGTCAGTACTG GATGCTTTTAGATTTTGAGAAATTATGTTCAATCCTCCCTATCCTGTATATTTAAAAGTTAATCAGCTAACTTACTCCGT TGTGTAATAACTGGTTTAAGATTAATTTGCAGGTAGAGAGACCTGTAACTAACTATCCGTGTCCCCAAAATGAAATACAT CCTTAAGATAAAACTAACACATATTTATGTATCTTTTTAAGCGCTTTTATCGTTTTCTGGAGGTGAAATCAAAGCATCCA GATGCTGCGGTACCTCCTATTGATGATACACTGAAGAAAATTACAGAGCCTGATGCAGACCTAGTTTTGCAAAATCAATC TGTGATAGACGCATTTTGTAGGTCTTTTGAGCTAAAGGAAAATCCCCTGGTAAGAATGTCTGTGTGCTTTGCTCTTAGTC TGTATCTAACATCAACTATGTTTTACATTTGAAATATCTTATTGCAGAAGAAAAGGCGCTTATTGCAAGAAAATATATCT TCTTCAATGGATGAAGAGGGTAAAGGAAACATTACCGCTCAGCCTGCCAATCTTATTGAATCTGTTAAAGTCGAGAACAT TGGGGATGTGACTCCAGTCCAAGATTTTGAAGCCATGATTTCACGCAGAGATAGTCCAGAATGGGTTGTGAAAGCGATCA AGGATATGAAAAATAAAATATTTGACCTTGTAGAGGACTCCAATGATGGTGATAACTATCCCAAAGCACTGGAGTGTTTA GTTGTGCTTCGCAAGGGTTGCATTCTTGAGCAGGTAAACATCTAGCATTTTTCTGTTTACCTTTTAATTATCTGTTATAT CCCTCTTCGTTCGAAATAGTTTGTTTTATCTACGTAGGCTTCTTGTTTATATTTGAGTTTCATGGTAAGTTGTTAACTTT ACAAACTACTTTTGTGAAGGAGCCAAAACAGTTCAATGATTTCCTAAAACATCTTTGCAATTTCTGTCGAGAGAAAAACC TTGATGGTTTCTGTGAATATCTTGCTTCTAAAGAACTCACCTTGATCTCCAAAACAGAAGCTGCAGACAGGTTTTTGCTT GATCTCTTTCCTACGGTTCAATTCATTTTAGCTTTTCCAGTTTTTACTTATTAACAGATTATAATTTGTTATTTGGTTTC ATGATACAGTGAAGTTACTGATGATGAAGCCAGAAGTTTCTTGGTTAAATCTGAAACATAACATGTTATTTGACAAAAAT AGGAAGACGTTGTATCATTCATTTGAATTCACTTGAGATTCTGACACTTGGATTTCATATGCGAGAAATTAGAATTTGGC ATTCTGCGGGCATACGTACTTGATAGATGAAATGTTCATACTCTAGTTCAGGATGTGACAGTGCAGTTGTAATTAAATAT GAAGTAGTATTTCCCAATTTGGATGAACTAATGTTATTCACCCCAATATAAGGGTGTGCTGATGGAACATTAAATTTTGG TCTTTTTTGTGTATCCACGAGTAGCTCAGCTTTTATGCATGCTGCATACCAAGTTCACTTTGCTCAATTATTTTCTTATG ATTTCTTGTTATATTCCTACTGTTTCTTTATATAACTTTTGGTGCACCAGCATGACTGGTTGGGAGTGTGAAGATAAATT CTTACCTTCTCTATTTGATGAACACTTTCTAGTTGTTTTTGTAATTTTGCAGTCCAAGTTCCCTACACCGTGGTTGTATG AAACATACCCAGAGTTCTAGGACAAGTCACCACAAAGACAATCTGATATCTGCATTCATAACCCTTGAAACTTGAAAGTA TGCCTCAGTATCTGCAATTTTTATTTCATTCTGGGTGTGTGCAAAATAGCTCAAATTGATTAGTCGTCACAAATAATTAT GCAATACTAATAATCAATTGGAAAGACTATATATTAATTTATGTTTTTGTGATTCGTAAGTTCACATGACACTGCAATTT GTTATGATTAAACTGCTTTCGAATAACTTTGGCCGAGTGCGGTGAACGTTAAATGTTCTTTTATGATTAGTTTTAAG 

CDS sequence (LotjaGi3g1v0433200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTATTTTTTCTGTAAAAAACAGGAAGCGTTGCTTTTGCTGCTTGATGTTGGCCCAACCATGCACTCCGTTCTTCCTGA AATTGAGAAAGTGACTTCCTTGCTTGTACAGAAGAAGCTGATCTATAACAAATATGATGAAGTGGGAATTGTCTTATTTG GAACAGAAGACACTGACAATGAACTAACTACAGAAGTGGGTGGATATGACCATGTTGTGGTTTTGAAAAATATTAAAGTG GTCGATGGAGATATTGTTGAGGCCTTGCAACAACTGCCTCGAGGAACCTCTAATGGTGATTTTCTTGATGCTGTCATTGT TGGCTTGGATATGTTAATAAAAAAGTTTGGAGAAACTAATAAAGGGAAGAAACGTGTGTGTCTTATTACAAATGCACAAT GTCCAATAAAATATCCTTTTGAAGGAACAAAAGAAGAGCAAGTTACCGCCATTGCTAAGCAAATGACCATCCATGGTATG AAAATGGAAAGTATAATTCTCAGAGGAAAGATTAGTCAAGATGGAAACAAGAGAACAATGGATGAGAATGATCGTTTATT AAATATTTTTGCTGAGGAAACATCAACGAGATTGTTGTATGTGGAGAATCCAATTTCTTTGTTTGGTGCTATTAAAACCC GGACTATAACTCCAGTTACAGTTTTCAGAGGGGATCTTGAACTCAGCCCAAAACTGAGGATTAAGGTAATGGTATACAAG AAAACAGCAGAAGAGAAATTTCCAACTCTGAAGAGATATTCTGATAAGGCTCCTCTAAATGATAAATATGCCACACATGA AGTCAAAGTTGAATATGAATACAAGAGTTCTGAAGATCCTGATAAAGTTATCCCTCCAGATCAAAGAATTAAAGGTTATC GTTATGGGCCTCAAATAGTTCCTATATCCTCTACTGAGTGGGAGGCTGTTAAGTTCAAAACAGAAAAGGGTGTAAAGCTT TTGGGATTTACTGATTCTTCGAATGTATTGAGACACCAGTACATGAAAGATGTCTATGTTTTCATAGCTGAACCTGAAAA TACCAAAGCCATACTTGCAGTTTCTGCACTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCGATTTTACGGTGTGTAT GGAGGCAGGGACAAGCAAATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGACGGAGATAATATTCCTGATTCATTT TATTTCAATGTACTTCCTTTTGCTGAGGATGTACGAGAGTTTCAATTCTCCTCTTTCACCAATTTTCCAGCATCGTGTCA GCCAAATGAACAACAGCTAGAGTCAGCAGCTAACTTGGTAAAAATGCTTGATCTTGCACCACAAGGGAAAGAGGAAGTTT TACGACCTGACTTTACTCCGAATCCAGTCCTGGAGCGCTTTTATCGTTTTCTGGAGGTGAAATCAAAGCATCCAGATGCT GCGGTACCTCCTATTGATGATACACTGAAGAAAATTACAGAGCCTGATGCAGACCTAGTTTTGCAAAATCAATCTGTGAT AGACGCATTTTGTAGGTCTTTTGAGCTAAAGGAAAATCCCCTGAAGAAAAGGCGCTTATTGCAAGAAAATATATCTTCTT CAATGGATGAAGAGGGTAAAGGAAACATTACCGCTCAGCCTGCCAATCTTATTGAATCTGTTAAAGTCGAGAACATTGGG GATGTGACTCCAGTCCAAGATTTTGAAGCCATGATTTCACGCAGAGATAGTCCAGAATGGGTTGTGAAAGCGATCAAGGA TATGAAAAATAAAATATTTGACCTTGTAGAGGACTCCAATGATGGTGATAACTATCCCAAAGCACTGGAGTGTTTAGTTG TGCTTCGCAAGGGTTGCATTCTTGAGCAGGAGCCAAAACAGTTCAATGATTTCCTAAAACATCTTTGCAATTTCTGTCGA GAGAAAAACCTTGATGGTTTCTGTGAATATCTTGCTTCTAAAGAACTCACCTTGATCTCCAAAACAGAAGCTGCAGACAG TGAAGTTACTGATGATGAAGCCAGAAGTTTCTTGGTTAAATCTGAAACATAA 

Protein sequence (LotjaGi3g1v0433200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYFFCKKQEALLLLLDVGPTMHSVLPEIEKVTSLLVQKKLIYNKYDEVGIVLFGTEDTDNELTTEVGGYDHVVVLKNIKV VDGDIVEALQQLPRGTSNGDFLDAVIVGLDMLIKKFGETNKGKKRVCLITNAQCPIKYPFEGTKEEQVTAIAKQMTIHGM KMESIILRGKISQDGNKRTMDENDRLLNIFAEETSTRLLYVENPISLFGAIKTRTITPVTVFRGDLELSPKLRIKVMVYK KTAEEKFPTLKRYSDKAPLNDKYATHEVKVEYEYKSSEDPDKVIPPDQRIKGYRYGPQIVPISSTEWEAVKFKTEKGVKL LGFTDSSNVLRHQYMKDVYVFIAEPENTKAILAVSALARAMKEMNKVAILRCVWRQGQANVVIGVLTPNLSDGDNIPDSF YFNVLPFAEDVREFQFSSFTNFPASCQPNEQQLESAANLVKMLDLAPQGKEEVLRPDFTPNPVLERFYRFLEVKSKHPDA AVPPIDDTLKKITEPDADLVLQNQSVIDAFCRSFELKENPLKKRRLLQENISSSMDEEGKGNITAQPANLIESVKVENIG DVTPVQDFEAMISRRDSPEWVVKAIKDMKNKIFDLVEDSNDGDNYPKALECLVVLRKGCILEQEPKQFNDFLKHLCNFCR EKNLDGFCEYLASKELTLISKTEAADSEVTDDEARSFLVKSET 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 26 26 -
Phobius 1 9 9 -
PIRSF 5 681 677 3.5E-219
Gene3D 5 203 199 2.1E-44
PANTHER 7 678 672 3.6E-257
PANTHER 7 678 672 3.6E-257
SUPERFAMILY 9 230 222 4.45E-30
Phobius 10 18 9 -
Pfam 10 151 142 4.8E-14
Phobius 19 26 8 -
Phobius 27 683 657 -
SUPERFAMILY 218 521 304 1.51E-82
CDD 219 520 302 8.34958E-101
Gene3D 219 422 204 9.0E-58
Pfam 229 434 206 1.6E-44
SMART 281 422 142 1.6E-38
Gene3D 426 522 97 3.4E-13
Pfam 455 526 72 7.9E-7
SUPERFAMILY 522 682 161 2.22E-46
Gene3D 534 682 149 1.3E-40
Pfam 563 678 116 2.0E-38

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Telomere maintenance Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences.
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Molecular function Damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Biological process Double-strand break repair via nonhomologous end joining The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
Biological process DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
Molecular function Hydrolase activity, acting on acid anhydrides Catalysis of the hydrolysis of any acid anhydride.
Molecular function Telomeric DNA binding Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
Cellular component Ku70:Ku80 complex Heterodimeric protein complex composed of a 70 kDa and a 80 kDa subunit, binds DNA through a channel formed by the heterodimer. Functions in DNA double stranded break repair, chromosome maintenance, transcription regulation, V(D)J recombination, and activation of DNA-PK.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0433200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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