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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0487400 |
| Transcript ID | LotjaGi3g1v0487400.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90505715..90510271) extracted from Lotus japonicus Gifu genome v1.2.
AAATACATCAAACGTCGACCCCTTCAAACACTCTTGATCTTCCTTATTGCTTTGCTTCATCGTCACTGTGTTTAGTACTA CTACTTTGATCTTCGAAACCAACCATGTCTAACCACGTCGAGTCATCATCATCGGACCCGTGAGTCAAATCATTGTCGTT TGTTTTGGTTTTGGAGTTTCTGTTTTCTCTGTTTCTTTTTTCTTACATTGGAAGAATGGGGTTGAATTTTCAGGAAACCG GGGAAGAAAGATTTCACTACGGCGATTCTTGAACGGAAGAAGTCACCGAACCGGTTAGTCGTTGATGAATCCATCAACGA CGACAACTCAGTGGTGGCCATGCACCCTTTAACCATGGAAAAACTCCAACTCTTCCGGGGAGACACTATCCTCATCAAGG TTTCTATTTTCTTCCTTATCTGGGGTTTCATTGAATTTCCAAATTCTGGGTTTCTGTTATTTTTTGGTGGGGTTTGTGGT TTATGGATTTTGGTTGTTGTTGCAGGGGAAGAAACGGAGGGACACTGTTTGCATTGCTCTTGCTGATGAGTCATGTGAGG AGCCTAAGATAAGGATGAACAAAGTTTTGAGGTCTAATTTGAGGGTTCGTCTTGGAGATGTTGTGTCTGTGCACCAGTGC GCTGATGTTAAGTATGGGAGGCGTGTTCACATTCTGCCTCTTGATGATACCATTGAAGGGCTTACTGGGAATCTGTTTGA TGTTTATTTGAAACGTGAGTTTCTTCTACTTTGCTCTCCTAAAGCACATGATTCTATCTTTTTAGAGTAGACTTTCAATG ATTATGATATCAATGCTTAATTGCTTAATTTCGGTTTGTATTTCCACTTATATGTAATGTAAGTGAGATTACTGTGTGGT ACAGTTTTCTAGTGTGTTTGGTTGTTTGATTAACCATGGATAGCTTTTTTCTAAAACATGATTTTGAAAATCCCAATTCA AAACCAAACTTGCATGTGTTGTTCTTGTTGTTGTAATACCATATATTTGAATCACGGTTGGATCCGCAATTGGGTTATGG TGAGAGTTTTATTTTCTCTTTGCTTAGATGGTGTTATAAGATGGGCATTCTTTTCTTATGGGAACCTCTTTTGTTGTGTG CTTGGAGCTCTCGCTTTCTATTTTATGAATGAATACATGTTTACTGTTGAGTAACTTTCAATTATCATGATGTTTTACCA CATTGATTGCTTTGCCAAAGCATCTGGATGTTTTTGTTTGAAAGATGGTGTGTGGTTGTTAATGTTCCAGGGATTTGATT CTGTTGGCTTTCCTTCTCTAAATTTGTGTGTTTGTATATAGGGTTTCGACTTCTAACTACTTTTTTGCTTATAATTTGCA GCTTATTTCTTGGAGGCTTATCGTCCAGTCAGAAAAGGAGATCTATTTCTTGTCCGAGGGATGAGAAGTGTAGAGTTCAA GGTCATTGAAACCGATCCTGGGGAGTATTGTGTAGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAGCCTGTGAGAA GGGAGGATGAGGAAAGGCTGGATGAAATTGGGTATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAG TTGGTAGAGCTTCCACTGAGGCATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGG ACCCCCAGGTTCTGGTAAGACATTGATAGCAAGAGCTGTAGCTAATGAAACTGGAGCATTCTTCTTTTGTATTAATGGTC CAGAGATTATGTCCAAACTTGCTGGAGAGAGTGAGAGCAATCTCAGAAAAGCATTTGAAGAAGCAGAAAAGAATGCTCCC TCAATTATCTTTATTGATGAGATTGATTCTATTGCACCCAAGCGGGAGAAGACAAACGGGGAAGTTGAACGCCGTATAGT CTCACAGCTTTTGACTCTTATGGATGGATTAAAGGCTCGTGCTCATGTTATAGTTATGGGAGCTACAAATCGTCCAAATA GCATTGACCCAGCCTTGAGAAGGTTTGGTAGATTTGATAGGGAAATTAACATTGGGGTTCCGGACGAGGTTGGGCGACTT GAAGTCCTTCGCATACATACCAAAAAGATGAAGCTTTCTGATGATGTAAGTTCAGCATTACTGAACTTTCATTTCTGTTG ATGGGCCGTGTTGCCTTTTGCATTTTGTGTTTTGCTTTGTCTAAACTTGTTGTGCATATGGCTCCTCTTATAGATTCTAA TTATTCATTGCTATTAATGCAACTGTTTTGATTATTCAATTGTTCTGGTTCTCTTACTGTAGGTTGATTTAGAGAAAATT GCAAAAAATACTCATGGTTATGTTGGTGCCGACCTTGCTGCTCTTTGCACTGAATCTGCTCTGCAATGCATTAGGGAGAA GATGGATGTCATTGATTTAGAAGCTGATACTATTGATGCTGAGGTGTTGAATTCTATGGCAGTTACAAATGAGCATTTCC ATACTTCTCTAGAAACAAGCAATCCGTCTGCTTTACGGGAAACTGTAAGTAGTTTTCTGTTAGTTGCTTTTGTTTAAAAT ATTATTGGATGGTGATTGGTGAGACTTTCTGTCTTTGGTATTTTTTTTTAATTAATTATCGTTGTCAACAGGTTGTTGAG GTGCCTAATGTCAGTTGGGAAGATATTGGAGGCCTTGAGAATGTCAAGCGCGAGCTGCAAGAGGTAAGCAATCTTACCCT GGTTATATCTTGTACTATGCTCTATCAATTTAATCTGAAATGATTTTCTCTTTGTGGCATAGACTGTTCAATATCCTGTG GAGCACCCAGAAAAGTTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTCCTCTTCTATGGACCTCCAGGAAATGGGAA AACTATGTTGGCCAAGGCAATAGCTAATGAATGCCAAGCTAACTTCATCAGCGTGAAAGGCCCAGAATTGCTTACTATGT GGTTTGGCGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCTGCTCCATGCATCCTCTTCTTTGAT GAGCTTGATTCCATTGCCACTCAGGTCTGTCTTTTTATCTCATTAAATTCCTAGTTTGCTATATCAGTATGTTTTACCCA TTATTGATATTAAACTGAGTTATAACTGTATCTTCTGAATTAATGTTGGTATTACTTCTATATCTTTGTAAAAGAATTCT GATATTCCAATGTGGTGCCAAATATAATTTTTGGATGTCAATACCTTTAGGGTTGCTCGCACATGTATATTTATCACTAT GTCATTGTTGCAGAGAGGAAATAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAA TGGATGGTATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACCAACAGACCTGACATCATTGATTCAGCACTTCTA CGACCTGGCCGTCTAGATCAATTGATCTATATTCCTCTTCCTGATGAGGACTCCCGTCATCAAATCTTCAAGGCCTGCTT GAGGAAGTCACCTGTAGAGAAAGAAGTTGGGTTGAGAGCTCTAGCTAAGTATACTCAAGGCTTCAGTGGTGCTGATATAA CAGAGATATGCCAGCGAGCTTGCAAATATGCTATAAGAGAAAGCATAGAAAAGGTATGCTTTTGGTTAGATTAATAGATA TAAATTTCTATTAGTTCTTCTAGCTTTCAAGGCAAAGCAGCCTCTCTGATGCCAGTGTATGGCTGCAATGAAACCTGTTA CTTATTTTTATGTAGTTCTGTGTTTTGGTGGTTGCTTTAAGTTGCTAGTTCAATACACTCACAATCAACTTGTTATACAT TAACCTTGGACCAATATACACTATCCCCCTTTTATATCTGAATGCACTTGTGGTGATTGGTCTAGCAATAGCTTCAACCA AGCATTGTTATCTGAGGTTGTGTTTGTTTATAATACCTATTCAATGAGTTTCTTATCACTAAGTTTGATTATTATTTGAC TGGTTTGTTTCAGGACATTGAGAGAGACCGGAAGAGAAAAGAACATCCTGAGGCCATGGATGAAGACATTGAGGGAGAGG GAGAGGTTGCTGAGATGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTTTGCGCGAAGGAGTGTTAGTGATGCTGAT ATACGCAAGTATCAGTCATTTGCTCAGACCTTACAGCAGTCCCGGGGTTTTGGAAGTGAATTCAGATTTCCTGCGACTGG AGGCAGGACCGTCGGAACTGCTGATGCTTTCGCAACTTCTGCTGGTGGGGCTGATGAAGAGGATCTGTATAGTTAGGTTT TATTTGAATGGTGTGTTTTCAGTAGCATATCTAGCTCAGGAAAATTGTTTTGTTTACTGTCCCTTCAAGGATTAACTGCG AACCTTGTTTCGTATTTTGCTTTTCTTATAATTTAAGTTTATGTACAAAATTTGCTTTTCTTATCCTTAAGTTTACTTAC GTTAATACCAGCTTAATATGAAATTCAGTTATCATATATTCTTAGATTATTCGAGTTAACACTGGAATTCAGAACCA
CDS sequence (LotjaGi3g1v0487400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAACCACGTCGAGTCATCATCATCGGACCCGAAACCGGGGAAGAAAGATTTCACTACGGCGATTCTTGAACGGAA GAAGTCACCGAACCGGTTAGTCGTTGATGAATCCATCAACGACGACAACTCAGTGGTGGCCATGCACCCTTTAACCATGG AAAAACTCCAACTCTTCCGGGGAGACACTATCCTCATCAAGGGGAAGAAACGGAGGGACACTGTTTGCATTGCTCTTGCT GATGAGTCATGTGAGGAGCCTAAGATAAGGATGAACAAAGTTTTGAGGTCTAATTTGAGGGTTCGTCTTGGAGATGTTGT GTCTGTGCACCAGTGCGCTGATGTTAAGTATGGGAGGCGTGTTCACATTCTGCCTCTTGATGATACCATTGAAGGGCTTA CTGGGAATCTGTTTGATGTTTATTTGAAACCTTATTTCTTGGAGGCTTATCGTCCAGTCAGAAAAGGAGATCTATTTCTT GTCCGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACCGATCCTGGGGAGTATTGTGTAGTTGCTCCAGACACTGA AATATTCTGTGAGGGGGAGCCTGTGAGAAGGGAGGATGAGGAAAGGCTGGATGAAATTGGGTATGATGATGTGGGTGGTG TCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCACTGAGGCATCCACAACTTTTTAAATCAATTGGTGTG AAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGTTCTGGTAAGACATTGATAGCAAGAGCTGTAGCTAATGAAAC TGGAGCATTCTTCTTTTGTATTAATGGTCCAGAGATTATGTCCAAACTTGCTGGAGAGAGTGAGAGCAATCTCAGAAAAG CATTTGAAGAAGCAGAAAAGAATGCTCCCTCAATTATCTTTATTGATGAGATTGATTCTATTGCACCCAAGCGGGAGAAG ACAAACGGGGAAGTTGAACGCCGTATAGTCTCACAGCTTTTGACTCTTATGGATGGATTAAAGGCTCGTGCTCATGTTAT AGTTATGGGAGCTACAAATCGTCCAAATAGCATTGACCCAGCCTTGAGAAGGTTTGGTAGATTTGATAGGGAAATTAACA TTGGGGTTCCGGACGAGGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAAGATGAAGCTTTCTGATGATGTTGAT TTAGAGAAAATTGCAAAAAATACTCATGGTTATGTTGGTGCCGACCTTGCTGCTCTTTGCACTGAATCTGCTCTGCAATG CATTAGGGAGAAGATGGATGTCATTGATTTAGAAGCTGATACTATTGATGCTGAGGTGTTGAATTCTATGGCAGTTACAA ATGAGCATTTCCATACTTCTCTAGAAACAAGCAATCCGTCTGCTTTACGGGAAACTGTTGTTGAGGTGCCTAATGTCAGT TGGGAAGATATTGGAGGCCTTGAGAATGTCAAGCGCGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAA GTTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTCCTCTTCTATGGACCTCCAGGAAATGGGAAAACTATGTTGGCCA AGGCAATAGCTAATGAATGCCAAGCTAACTTCATCAGCGTGAAAGGCCCAGAATTGCTTACTATGTGGTTTGGCGAAAGT GAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCTGCTCCATGCATCCTCTTCTTTGATGAGCTTGATTCCAT TGCCACTCAGAGAGGAAATAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGG ATGGTATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACCAACAGACCTGACATCATTGATTCAGCACTTCTACGA CCTGGCCGTCTAGATCAATTGATCTATATTCCTCTTCCTGATGAGGACTCCCGTCATCAAATCTTCAAGGCCTGCTTGAG GAAGTCACCTGTAGAGAAAGAAGTTGGGTTGAGAGCTCTAGCTAAGTATACTCAAGGCTTCAGTGGTGCTGATATAACAG AGATATGCCAGCGAGCTTGCAAATATGCTATAAGAGAAAGCATAGAAAAGGACATTGAGAGAGACCGGAAGAGAAAAGAA CATCCTGAGGCCATGGATGAAGACATTGAGGGAGAGGGAGAGGTTGCTGAGATGATCAAGGCTGCTCATTTTGAAGAGTC AATGAAGTTTGCGCGAAGGAGTGTTAGTGATGCTGATATACGCAAGTATCAGTCATTTGCTCAGACCTTACAGCAGTCCC GGGGTTTTGGAAGTGAATTCAGATTTCCTGCGACTGGAGGCAGGACCGTCGGAACTGCTGATGCTTTCGCAACTTCTGCT GGTGGGGCTGATGAAGAGGATCTGTATAGTTAG
Protein sequence (LotjaGi3g1v0487400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNHVESSSSDPKPGKKDFTTAILERKKSPNRLVVDESINDDNSVVAMHPLTMEKLQLFRGDTILIKGKKRRDTVCIALA DESCEEPKIRMNKVLRSNLRVRLGDVVSVHQCADVKYGRRVHILPLDDTIEGLTGNLFDVYLKPYFLEAYRPVRKGDLFL VRGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVRREDEERLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK TNGEVERRIVSQLLTLMDGLKARAHVIVMGATNRPNSIDPALRRFGRFDREINIGVPDEVGRLEVLRIHTKKMKLSDDVD LEKIAKNTHGYVGADLAALCTESALQCIREKMDVIDLEADTIDAEVLNSMAVTNEHFHTSLETSNPSALRETVVEVPNVS WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGNGKTMLAKAIANECQANFISVKGPELLTMWFGES EANVREIFDKARQSAPCILFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLR PGRLDQLIYIPLPDEDSRHQIFKACLRKSPVEKEVGLRALAKYTQGFSGADITEICQRACKYAIRESIEKDIERDRKRKE HPEAMDEDIEGEGEVAEMIKAAHFEESMKFARRSVSDADIRKYQSFAQTLQQSRGFGSEFRFPATGGRTVGTADAFATSA GGADEEDLYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 803 | 797 | 0.0 | – | |
| Gene3D | 7 | 114 | 108 | 8.5E-49 | – | |
| PANTHER | 7 | 803 | 797 | 0.0 | – | |
| SUPERFAMILY | 28 | 112 | 85 | 1.24E-27 | ||
| Pfam | 32 | 113 | 82 | 3.6E-21 | ||
| SMART | 32 | 115 | 84 | 4.1E-30 | ||
| TIGRFAM | 38 | 771 | 734 | 5.6E-262 | ||
| SUPERFAMILY | 114 | 205 | 92 | 3.2E-31 | ||
| Gene3D | 115 | 210 | 96 | 7.3E-46 | – | |
| SMART | 132 | 197 | 66 | 2.6E-15 | ||
| Pfam | 133 | 196 | 64 | 4.0E-11 | ||
| SUPERFAMILY | 206 | 466 | 261 | 7.65E-68 | ||
| Gene3D | 211 | 375 | 165 | 1.1E-65 | – | |
| CDD | 212 | 375 | 164 | 3.79465E-32 | – | |
| SMART | 242 | 378 | 137 | 7.3E-23 | ||
| Pfam | 246 | 375 | 130 | 2.4E-47 | ||
| ProSitePatterns | 346 | 364 | 19 | - | ||
| Gene3D | 377 | 472 | 96 | 1.0E-32 | – | |
| Pfam | 398 | 437 | 40 | 7.8E-14 | ||
| Gene3D | 473 | 653 | 181 | 1.6E-73 | – | |
| SUPERFAMILY | 477 | 768 | 292 | 1.58E-72 | ||
| CDD | 485 | 652 | 168 | 1.03549E-29 | – | |
| SMART | 515 | 654 | 140 | 2.0E-21 | ||
| Pfam | 519 | 652 | 134 | 1.8E-45 | ||
| ProSitePatterns | 622 | 640 | 19 | - | ||
| Gene3D | 654 | 771 | 118 | 2.5E-39 | – | |
| Pfam | 677 | 715 | 39 | 7.2E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi3g1v0487400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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