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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0487400 |
| Transcript ID | LotjaGi3g1v0487400.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90505840..90510030) extracted from Lotus japonicus Gifu genome v1.2.
TCATCATCGGACCCGTGAGTCAAATCATTGTCGTTTGTTTTGGTTTTGGAGTTTCTGTTTTCTCTGTTTCTTTTTTCTTA CATTGGAAGAATGGGGTTGAATTTTCAGGAAACCGGGGAAGAAAGATTTCACTACGGCGATTCTTGAACGGAAGAAGTCA CCGAACCGGTTAGTCGTTGATGAATCCATCAACGACGACAACTCAGTGGTGGCCATGCACCCTTTAACCATGGAAAAACT CCAACTCTTCCGGGGAGACACTATCCTCATCAAGGTTTCTATTTTCTTCCTTATCTGGGGTTTCATTGAATTTCCAAATT CTGGGTTTCTGTTATTTTTTGGTGGGGTTTGTGGTTTATGGATTTTGGTTGTTGTTGCAGGGGAAGAAACGGAGGGACAC TGTTTGCATTGCTCTTGCTGATGAGTCATGTGAGGAGCCTAAGATAAGGATGAACAAAGTTTTGAGGTCTAATTTGAGGG TTCGTCTTGGAGATGTTGTGTCTGTGCACCAGTGCGCTGATGTTAAGTATGGGAGGCGTGTTCACATTCTGCCTCTTGAT GATACCATTGAAGGGCTTACTGGGAATCTGTTTGATGTTTATTTGAAACGTGAGTTTCTTCTACTTTGCTCTCCTAAAGC ACATGATTCTATCTTTTTAGAGTAGACTTTCAATGATTATGATATCAATGCTTAATTGCTTAATTTCGGTTTGTATTTCC ACTTATATGTAATGTAAGTGAGATTACTGTGTGGTACAGTTTTCTAGTGTGTTTGGTTGTTTGATTAACCATGGATAGCT TTTTTCTAAAACATGATTTTGAAAATCCCAATTCAAAACCAAACTTGCATGTGTTGTTCTTGTTGTTGTAATACCATATA TTTGAATCACGGTTGGATCCGCAATTGGGTTATGGTGAGAGTTTTATTTTCTCTTTGCTTAGATGGTGTTATAAGATGGG CATTCTTTTCTTATGGGAACCTCTTTTGTTGTGTGCTTGGAGCTCTCGCTTTCTATTTTATGAATGAATACATGTTTACT GTTGAGTAACTTTCAATTATCATGATGTTTTACCACATTGATTGCTTTGCCAAAGCATCTGGATGTTTTTGTTTGAAAGA TGGTGTGTGGTTGTTAATGTTCCAGGGATTTGATTCTGTTGGCTTTCCTTCTCTAAATTTGTGTGTTTGTATATAGGGTT TCGACTTCTAACTACTTTTTTGCTTATAATTTGCAGCTTATTTCTTGGAGGCTTATCGTCCAGTCAGAAAAGGAGATCTA TTTCTTGTCCGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACCGATCCTGGGGAGTATTGTGTAGTTGCTCCAGA CACTGAAATATTCTGTGAGGGGGAGCCTGTGAGAAGGGAGGATGAGGAAAGGCTGGATGAAATTGGGTATGATGATGTGG GTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCACTGAGGCATCCACAACTTTTTAAATCAATT GGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGTTCTGGTAAGACATTGATAGCAAGAGCTGTAGCTAA TGAAACTGGAGCATTCTTCTTTTGTATTAATGGTCCAGAGATTATGTCCAAACTTGCTGGAGAGAGTGAGAGCAATCTCA GAAAAGCATTTGAAGAAGCAGAAAAGAATGCTCCCTCAATTATCTTTATTGATGAGATTGATTCTATTGCACCCAAGCGG GAGAAGACAAACGGGGAAGTTGAACGCCGTATAGTCTCACAGCTTTTGACTCTTATGGATGGATTAAAGGCTCGTGCTCA TGTTATAGTTATGGGAGCTACAAATCGTCCAAATAGCATTGACCCAGCCTTGAGAAGGTTTGGTAGATTTGATAGGGAAA TTAACATTGGGGTTCCGGACGAGGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAAGATGAAGCTTTCTGATGAT GTAAGTTCAGCATTACTGAACTTTCATTTCTGTTGATGGGCCGTGTTGCCTTTTGCATTTTGTGTTTTGCTTTGTCTAAA CTTGTTGTGCATATGGCTCCTCTTATAGATTCTAATTATTCATTGCTATTAATGCAACTGTTTTGATTATTCAATTGTTC TGGTTCTCTTACTGTAGGTTGATTTAGAGAAAATTGCAAAAAATACTCATGGTTATGTTGGTGCCGACCTTGCTGCTCTT TGCACTGAATCTGCTCTGCAATGCATTAGGGAGAAGATGGATGTCATTGATTTAGAAGCTGATACTATTGATGCTGAGGT GTTGAATTCTATGGCAGTTACAAATGAGCATTTCCATACTTCTCTAGAAACAAGCAATCCGTCTGCTTTACGGGAAACTG TAAGTAGTTTTCTGTTAGTTGCTTTTGTTTAAAATATTATTGGATGGTGATTGGTGAGACTTTCTGTCTTTGGTATTTTT TTTTAATTAATTATCGTTGTCAACAGGTTGTTGAGGTGCCTAATGTCAGTTGGGAAGATATTGGAGGCCTTGAGAATGTC AAGCGCGAGCTGCAAGAGGTAAGCAATCTTACCCTGGTTATATCTTGTACTATGCTCTATCAATTTAATCTGAAATGATT TTCTCTTTGTGGCATAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAGTTTGAGAAGTTTGGTATGTCACCATCAAAA GGAGTCCTCTTCTATGGACCTCCAGGAAATGGGAAAACTATGTTGGCCAAGGCAATAGCTAATGAATGCCAAGCTAACTT CATCAGCGTGAAAGGCCCAGAATTGCTTACTATGTGGTTTGGCGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGG CCAGACAATCTGCTCCATGCATCCTCTTCTTTGATGAGCTTGATTCCATTGCCACTCAGGTCTGTCTTTTTATCTCATTA AATTCCTAGTTTGCTATATCAGTATGTTTTACCCATTATTGATATTAAACTGAGTTATAACTGTATCTTCTGAATTAATG TTGGTATTACTTCTATATCTTTGTAAAAGAATTCTGATATTCCAATGTGGTGCCAAATATAATTTTTGGATGTCAATACC TTTAGGGTTGCTCGCACATGTATATTTATCACTATGTCATTGTTGCAGAGAGGAAATAGTGTTGGGGATGCTGGTGGTGC TGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGTATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAA CCAACAGACCTGACATCATTGATTCAGCACTTCTACGACCTGGCCGTCTAGATCAATTGATCTATATTCCTCTTCCTGAT GAGGACTCCCGTCATCAAATCTTCAAGGCCTGCTTGAGGAAGTCACCTGTAGAGAAAGAAGTTGGGTTGAGAGCTCTAGC TAAGTATACTCAAGGCTTCAGTGGTGCTGATATAACAGAGATATGCCAGCGAGCTTGCAAATATGCTATAAGAGAAAGCA TAGAAAAGGTATGCTTTTGGTTAGATTAATAGATATAAATTTCTATTAGTTCTTCTAGCTTTCAAGGCAAAGCAGCCTCT CTGATGCCAGTGTATGGCTGCAATGAAACCTGTTACTTATTTTTATGTAGTTCTGTGTTTTGGTGGTTGCTTTAAGTTGC TAGTTCAATACACTCACAATCAACTTGTTATACATTAACCTTGGACCAATATACACTATCCCCCTTTTATATCTGAATGC ACTTGTGGTGATTGGTCTAGCAATAGCTTCAACCAAGCATTGTTATCTGAGGTTGTGTTTGTTTATAATACCTATTCAAT GAGTTTCTTATCACTAAGTTTGATTATTATTTGACTGGTTTGTTTCAGGACATTGAGAGAGACCGGAAGAGAAAAGAACA TCCTGAGGCCATGGATGAAGACATTGAGGGAGAGGGAGAGGTTGCTGAGATGATCAAGGCTGCTCATTTTGAAGAGTCAA TGAAGTTTGCGCGAAGGAGTGTTAGTGATGCTGATATACGCAAGTATCAGTCATTTGCTCAGACCTTACAGCAGTCCCGG GGTTTTGGAAGTGAATTCAGATTTCCTGCGACTGGAGGCAGGACCGTCGGAACTGCTGATGCTTTCGCAACTTCTGCTGG TGGGGCTGATGAAGAGGATCTGTATAGTTAG
CDS sequence (LotjaGi3g1v0487400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACCCTTTAACCATGGAAAAACTCCAACTCTTCCGGGGAGACACTATCCTCATCAAGGGGAAGAAACGGAGGGACAC TGTTTGCATTGCTCTTGCTGATGAGTCATGTGAGGAGCCTAAGATAAGGATGAACAAAGTTTTGAGGTCTAATTTGAGGG TTCGTCTTGGAGATGTTGTGTCTGTGCACCAGTGCGCTGATGTTAAGTATGGGAGGCGTGTTCACATTCTGCCTCTTGAT GATACCATTGAAGGGCTTACTGGGAATCTGTTTGATGTTTATTTGAAACCTTATTTCTTGGAGGCTTATCGTCCAGTCAG AAAAGGAGATCTATTTCTTGTCCGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACCGATCCTGGGGAGTATTGTG TAGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAGCCTGTGAGAAGGGAGGATGAGGAAAGGCTGGATGAAATTGGG TATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCACTGAGGCATCCACAACT TTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGTTCTGGTAAGACATTGATAGCAA GAGCTGTAGCTAATGAAACTGGAGCATTCTTCTTTTGTATTAATGGTCCAGAGATTATGTCCAAACTTGCTGGAGAGAGT GAGAGCAATCTCAGAAAAGCATTTGAAGAAGCAGAAAAGAATGCTCCCTCAATTATCTTTATTGATGAGATTGATTCTAT TGCACCCAAGCGGGAGAAGACAAACGGGGAAGTTGAACGCCGTATAGTCTCACAGCTTTTGACTCTTATGGATGGATTAA AGGCTCGTGCTCATGTTATAGTTATGGGAGCTACAAATCGTCCAAATAGCATTGACCCAGCCTTGAGAAGGTTTGGTAGA TTTGATAGGGAAATTAACATTGGGGTTCCGGACGAGGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAAGATGAA GCTTTCTGATGATGTTGATTTAGAGAAAATTGCAAAAAATACTCATGGTTATGTTGGTGCCGACCTTGCTGCTCTTTGCA CTGAATCTGCTCTGCAATGCATTAGGGAGAAGATGGATGTCATTGATTTAGAAGCTGATACTATTGATGCTGAGGTGTTG AATTCTATGGCAGTTACAAATGAGCATTTCCATACTTCTCTAGAAACAAGCAATCCGTCTGCTTTACGGGAAACTGTTGT TGAGGTGCCTAATGTCAGTTGGGAAGATATTGGAGGCCTTGAGAATGTCAAGCGCGAGCTGCAAGAGACTGTTCAATATC CTGTGGAGCACCCAGAAAAGTTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTCCTCTTCTATGGACCTCCAGGAAAT GGGAAAACTATGTTGGCCAAGGCAATAGCTAATGAATGCCAAGCTAACTTCATCAGCGTGAAAGGCCCAGAATTGCTTAC TATGTGGTTTGGCGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCTGCTCCATGCATCCTCTTCT TTGATGAGCTTGATTCCATTGCCACTCAGAGAGGAAATAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAAT CAACTTCTGACTGAAATGGATGGTATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACCAACAGACCTGACATCAT TGATTCAGCACTTCTACGACCTGGCCGTCTAGATCAATTGATCTATATTCCTCTTCCTGATGAGGACTCCCGTCATCAAA TCTTCAAGGCCTGCTTGAGGAAGTCACCTGTAGAGAAAGAAGTTGGGTTGAGAGCTCTAGCTAAGTATACTCAAGGCTTC AGTGGTGCTGATATAACAGAGATATGCCAGCGAGCTTGCAAATATGCTATAAGAGAAAGCATAGAAAAGGACATTGAGAG AGACCGGAAGAGAAAAGAACATCCTGAGGCCATGGATGAAGACATTGAGGGAGAGGGAGAGGTTGCTGAGATGATCAAGG CTGCTCATTTTGAAGAGTCAATGAAGTTTGCGCGAAGGAGTGTTAGTGATGCTGATATACGCAAGTATCAGTCATTTGCT CAGACCTTACAGCAGTCCCGGGGTTTTGGAAGTGAATTCAGATTTCCTGCGACTGGAGGCAGGACCGTCGGAACTGCTGA TGCTTTCGCAACTTCTGCTGGTGGGGCTGATGAAGAGGATCTGTATAGTTAG
Protein sequence (LotjaGi3g1v0487400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHPLTMEKLQLFRGDTILIKGKKRRDTVCIALADESCEEPKIRMNKVLRSNLRVRLGDVVSVHQCADVKYGRRVHILPLD DTIEGLTGNLFDVYLKPYFLEAYRPVRKGDLFLVRGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVRREDEERLDEIG YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGES ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARAHVIVMGATNRPNSIDPALRRFGR FDREINIGVPDEVGRLEVLRIHTKKMKLSDDVDLEKIAKNTHGYVGADLAALCTESALQCIREKMDVIDLEADTIDAEVL NSMAVTNEHFHTSLETSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGN GKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCILFFDELDSIATQRGNSVGDAGGAADRVLN QLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVEKEVGLRALAKYTQGF SGADITEICQRACKYAIRESIEKDIERDRKRKEHPEAMDEDIEGEGEVAEMIKAAHFEESMKFARRSVSDADIRKYQSFA QTLQQSRGFGSEFRFPATGGRTVGTADAFATSAGGADEEDLYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 756 | 756 | 0.0 | – | |
| SUPERFAMILY | 1 | 65 | 65 | 3.07E-20 | ||
| SMART | 1 | 68 | 68 | 1.6E-13 | ||
| PANTHER | 1 | 756 | 756 | 0.0 | – | |
| Pfam | 1 | 66 | 66 | 5.0E-17 | ||
| Gene3D | 1 | 67 | 67 | 1.3E-30 | – | |
| TIGRFAM | 3 | 724 | 722 | 2.9E-261 | ||
| SUPERFAMILY | 67 | 158 | 92 | 2.94E-31 | ||
| Gene3D | 68 | 163 | 96 | 6.7E-46 | – | |
| SMART | 85 | 150 | 66 | 2.6E-15 | ||
| Pfam | 86 | 149 | 64 | 3.7E-11 | ||
| SUPERFAMILY | 159 | 419 | 261 | 6.8E-68 | ||
| Gene3D | 164 | 328 | 165 | 9.8E-66 | – | |
| CDD | 165 | 328 | 164 | 5.8172E-32 | – | |
| SMART | 195 | 331 | 137 | 7.3E-23 | ||
| Pfam | 199 | 328 | 130 | 2.2E-47 | ||
| ProSitePatterns | 299 | 317 | 19 | - | ||
| Gene3D | 330 | 425 | 96 | 9.6E-33 | – | |
| Pfam | 351 | 390 | 40 | 7.3E-14 | ||
| Gene3D | 426 | 606 | 181 | 1.5E-73 | – | |
| SUPERFAMILY | 430 | 721 | 292 | 1.45E-72 | ||
| CDD | 438 | 605 | 168 | 1.55043E-29 | – | |
| SMART | 468 | 607 | 140 | 2.0E-21 | ||
| Pfam | 472 | 605 | 134 | 1.7E-45 | ||
| ProSitePatterns | 575 | 593 | 19 | - | ||
| Gene3D | 607 | 724 | 118 | 2.3E-39 | – | |
| Pfam | 630 | 668 | 39 | 6.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi3g1v0487400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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