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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0021600 |
| Transcript ID | LotjaGi4g1v0021600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT2G30950.4 FtsH extracellular protease family; Swiss-Prot: sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; TrEMBL-Plants: tr|V7CNS0|V7CNS0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0021600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2644989..2648895) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCAAACGTTAAGAAAACGCCACGTATGTTTTTCTCAAACCACAGCCAAACCACACACTATCAACTCTTCAATAAAA TCACCTTCCTCTGCCTCAAGAGCTTCATTCAGTGCTTCTCCTCTCTCATTCTAAGGTATGTTCTTCTTTCTCACCATGCT CTTTTCATTGCTTTCTTGCTCATAACTTTAATGTTCATGTTCTTGTTTTTTATTTTTTAGAAAATGTTAATTGCCTTTAA TTTTGTCAATTTCCCAGATTTTATTTTTGGGTAATTTAATTGTTGATGTAGTTAATGGTACCTACATACACCCTTTAATC TGAAAGGCTCATATATTAACTTTTATATAATACCATTACATCAGTTGAATTGAGTGAGAGTTGAGATTTCCTTCCTCATT TAGAATAATTGTTGGCTTGTTACTTTTCATTCTAGTTTAATTTCTCCAACATTTAGAATGAATTTTCTATGCTGGTTTTG TGTAATACTAAGTGCATGTTTGGAAACCCTTTTACAATTGATTCTGAAGTCATATTCAATTCTAGGGAAAGTTTATGTGA GTAGTGTCTGAGTTTCAAAATTGATTCTGATGACAGAGAAGTCGATCCAAACATGCTATAAATTTAGTTTACAACCACAA GGATATTAAAAATTTGAACAACTCAGTGTTTACAAAAGTAGTATTCACTTAAGATCTCATATTTTGGTTTTGGTTGATGC AGATGGCAGCATCATCAGCATGTCTTGTTGGTAATGGTTTATCTACACGGGGTAACAGAATTACTCTCGGTAAGGACTTC AATGGAAGATATCTATTCTCATCTTGGAGGTTGAACAAGGCACCAAAAGCGTTTTCGGTAAAGGCGTCTTTAGACCAAAG CCAGAACGGAGGGAGAAGGGAGCTTCTTAAGTTGCTTGGAAATGTGGGAGTTGGATTACCAGCATTATTGGGAGGTGGCA AGGCTTATGCTGACGAACAAGGGGTTTCCTCCTCCAGAATGTCTTATTCTAGGTTTCTAGAGTATTTGGACAAGGACAGG GTTAACAAAGTGGATCTGTATGAGAATGGAACCATAGCTATTGTTGAGGCAGTTTCTCCTGAGTTGGGTAACAGGTTGCA GCGTGTTAAGGTTCAACTTCCTGGACTTAACCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTC ACAATGCTCAAGAGGATTCAGGTTCTCTTTTGTTTAACCTGATTGGGAATCTGGCTTTCCCTATAATCTTGATTGGAGGG TTGTTCCTTCTCATGAGGAGGCCCGGTGGGATGGGAGGTCCCGGTGGCCCTGGATTTCCTCTTACTTTCGGTCAATCTAA AGCCAAGTTTCAGATGGAACCAAACACTGGAGTGACATTTGATGATGTTGCCGGGGTGGATGAAGCCAAGCAGGATTTTA TGGAAGTGGTGGAGTTTCTCAAGAAGCCTGAGAGGTTTACTGCTGTCGGAGCTCGCATACCTAAAGGAGTTCTTCTTATT GGTCCTCCCGGAACTGGGAAGACCTTGTTAGCCAAGGCTATTGCCGGTGAAGCCGGAGTTCCGTTTTTCTCAATATCTGG TTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGCGCTTCTCGAGTCCGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCC CTTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGGAGACAAAGAGGGACTGGAATTGGTGGAGGGAATGATGAAAGA GAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAATACCGGTATCATTGTCGTTGCTGCAACTAA CAGGGCTGACATTCTTGACTCTGCCTTACTGAGACCTGGCCGGTTTGATAGACAGGTATGGTTATATTCCGAAACGCTTT ATGCTTTAAACTGATGAGTTAATTAAATACTGAAGTAACTGAACATACTGTTTTGCAGGTAATGGTTGATGTTCCGGATG TAAGGGGAAGGACTGAGATCCTAAAGGTTCATGGTAGCAACAAAAAGTTTGAAGCTGATGTCTCTCTTGAAATAATTGCA ATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAATCTCTTGAACGAAGCTGCTATATTAGCTGGTCGGCGTGGAAA GACAGGGATTTCATCTAAAGAGATTGATGATTCTATTGATAGGATTGTAGCTGGAATGGAAGGAACAGTGATGACAGATG GGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGGTAAGTAATCAGACCCTCATATTGTTTT TCAAGTAAATGTTGTGTAAGATTGTGGTGGAAGCAAGGTGTTGTTTTCTAAATGACTTCATGTTACGCGAAACAATCCCC ATAAAGTTGTTCTTGAAATCATGTACTTATCTCTGCTTGCAGAACTTTGACCCCTGGTCATGATGCTGTGCAAAAGGTAA CACTAGTTCCTCGTGGACAAGCCCGGGGTCTTACATGGTTCATTCCTTCTGATGACCCAACTTTGATCTCAAAACAACAA CTCTTTGCAAGAATTGTTGGAGGGTTAGGTGGTAGGGCTGCAGAGGAAATAATTTTTGGTGAGCCAGAGGTTACAACTGG AGCAGCTGGTGATTTGCAGCAAATCACTGGTTTGGCAAAACAGGTACTTTTATATGGATTTTGTTTCAAATTTATCTCCT TCTCATTCCTTTAATTTCTGTGGGGTTGAAGATGCTGATGTTTTATAGCTGAAAAAATTATAGTATGATTCATTTTGGTA CTATTGTGTCAGGCATTTGTTGATTGGTGAGATTGGCAATAAGTTTCCTTCATATGATTTCTTGAGTAATGAAACTTAAA GCTTTTGATTTACATTGAATATTGGTAATTTACATATTGAAGGAAGGACTTCTAATTTTCCAAATAAAATATTAACCCAC AAAATTTGGTTTTTAATCAAGCGCAACCGCATCGAGTGATCTTGATACATGTAACCAACCTCACTAGCATAAGACTTTGT TGTTGATGATGTTGTTGATTCCCCCCCCCCCCCCCCCCTCTTTGATCTTTCTATGCTGCTTCAACAAATGTAAATGATCC TCTTGCAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCATGGAAGCAGCACAAAGTGGAGACGTT ATCATGAGAATGATGGCAAGGAACTCGATGTCAGAAAAGCTTGCAGAAGACATTGATGCTGCTACCAAGAGGATCTCAGA TGATGCATATGTAATCGCACTGCGCCATATAAGAAACAACCGCGAGGCAATTGACAAGATTGTGGAAGTCCTTCTGGAGA AAGAGACATTGAGTGGAGATGAATTCCGCGCTATACTCTCTGAATTTGTTGAAATCCCAGTAGAAAATCGGGTTCCTCCT TCTAAGACATTAGCAGCAACTGTTTGAATAGCCTATATGGCTATATGTAATATGTTTAATGTATCATCTCAGAATACGCA ATACCTCCTCTACAGCCTGCACTAAATTTGTGAATGATAGAAGTTTTAATTTTTTGTAGTATTGACAATGCAAAGTATAT ATACCAAAGAGCAAATGTTTTTAGTGCAGAATTCCCCAGTTTCCTCCTTTACATCTATTATGCAGTGTGACTTTCGTGAG CAGTAAAAGCATTAATCTTAGTGTCATTATATATACCTGGTGAGATGCATTGTTTAGTTGGAGTGCAAATTGGTTGTGCT GGTGAGAGCCTAAAAAAGTGATATTACATCTATTAAGCTTTTATTTCTAATATTATTTTTTCGAAAGCGATTTCTTATAT TATTTTTATATAGCTTATTTTTTTTATTAATGGGAGAATCCAAACTCATACTTCGACCTTTAACATA
CDS sequence (LotjaGi4g1v0021600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCATCATCAGCATGTCTTGTTGGTAATGGTTTATCTACACGGGGTAACAGAATTACTCTCGGTAAGGACTTCAA TGGAAGATATCTATTCTCATCTTGGAGGTTGAACAAGGCACCAAAAGCGTTTTCGGTAAAGGCGTCTTTAGACCAAAGCC AGAACGGAGGGAGAAGGGAGCTTCTTAAGTTGCTTGGAAATGTGGGAGTTGGATTACCAGCATTATTGGGAGGTGGCAAG GCTTATGCTGACGAACAAGGGGTTTCCTCCTCCAGAATGTCTTATTCTAGGTTTCTAGAGTATTTGGACAAGGACAGGGT TAACAAAGTGGATCTGTATGAGAATGGAACCATAGCTATTGTTGAGGCAGTTTCTCCTGAGTTGGGTAACAGGTTGCAGC GTGTTAAGGTTCAACTTCCTGGACTTAACCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTCAC AATGCTCAAGAGGATTCAGGTTCTCTTTTGTTTAACCTGATTGGGAATCTGGCTTTCCCTATAATCTTGATTGGAGGGTT GTTCCTTCTCATGAGGAGGCCCGGTGGGATGGGAGGTCCCGGTGGCCCTGGATTTCCTCTTACTTTCGGTCAATCTAAAG CCAAGTTTCAGATGGAACCAAACACTGGAGTGACATTTGATGATGTTGCCGGGGTGGATGAAGCCAAGCAGGATTTTATG GAAGTGGTGGAGTTTCTCAAGAAGCCTGAGAGGTTTACTGCTGTCGGAGCTCGCATACCTAAAGGAGTTCTTCTTATTGG TCCTCCCGGAACTGGGAAGACCTTGTTAGCCAAGGCTATTGCCGGTGAAGCCGGAGTTCCGTTTTTCTCAATATCTGGTT CTGAGTTTGTTGAGATGTTTGTTGGTGTTGGCGCTTCTCGAGTCCGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCT TGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGGAGACAAAGAGGGACTGGAATTGGTGGAGGGAATGATGAAAGAGA ACAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAATACCGGTATCATTGTCGTTGCTGCAACTAACA GGGCTGACATTCTTGACTCTGCCTTACTGAGACCTGGCCGGTTTGATAGACAGGTAATGGTTGATGTTCCGGATGTAAGG GGAAGGACTGAGATCCTAAAGGTTCATGGTAGCAACAAAAAGTTTGAAGCTGATGTCTCTCTTGAAATAATTGCAATGAG AACACCTGGTTTTAGTGGAGCTGATCTTGCAAATCTCTTGAACGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGACAG GGATTTCATCTAAAGAGATTGATGATTCTATTGATAGGATTGTAGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAG AGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACCCCTGGTCATGATGCTGTGCAAAA GGTAACACTAGTTCCTCGTGGACAAGCCCGGGGTCTTACATGGTTCATTCCTTCTGATGACCCAACTTTGATCTCAAAAC AACAACTCTTTGCAAGAATTGTTGGAGGGTTAGGTGGTAGGGCTGCAGAGGAAATAATTTTTGGTGAGCCAGAGGTTACA ACTGGAGCAGCTGGTGATTTGCAGCAAATCACTGGTTTGGCAAAACAGATGGTAACCACATTTGGAATGTCTGATATTGG TCCTTGGTCACTCATGGAAGCAGCACAAAGTGGAGACGTTATCATGAGAATGATGGCAAGGAACTCGATGTCAGAAAAGC TTGCAGAAGACATTGATGCTGCTACCAAGAGGATCTCAGATGATGCATATGTAATCGCACTGCGCCATATAAGAAACAAC CGCGAGGCAATTGACAAGATTGTGGAAGTCCTTCTGGAGAAAGAGACATTGAGTGGAGATGAATTCCGCGCTATACTCTC TGAATTTGTTGAAATCCCAGTAGAAAATCGGGTTCCTCCTTCTAAGACATTAGCAGCAACTGTTTGA
Protein sequence (LotjaGi4g1v0021600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASSACLVGNGLSTRGNRITLGKDFNGRYLFSSWRLNKAPKAFSVKASLDQSQNGGRRELLKLLGNVGVGLPALLGGGK AYADEQGVSSSRMSYSRFLEYLDKDRVNKVDLYENGTIAIVEAVSPELGNRLQRVKVQLPGLNQELLQKFREKNIDFAAH NAQEDSGSLLFNLIGNLAFPIILIGGLFLLMRRPGGMGGPGGPGFPLTFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFM EVVEFLKKPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAP CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVMVDVPDVR GRTEILKVHGSNKKFEADVSLEIIAMRTPGFSGADLANLLNEAAILAGRRGKTGISSKEIDDSIDRIVAGMEGTVMTDGK SKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVT TGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMEAAQSGDVIMRMMARNSMSEKLAEDIDAATKRISDDAYVIALRHIRNN REAIDKIVEVLLEKETLSGDEFRAILSEFVEIPVENRVPPSKTLAATV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 679 | 679 | 0.0 | – | |
| PANTHER | 1 | 679 | 679 | 0.0 | – | |
| Phobius | 1 | 168 | 168 | - | – | |
| Hamap | 29 | 682 | 654 | 35.113 | ||
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 169 | 190 | 22 | - | – | |
| TIGRFAM | 172 | 666 | 495 | 8.4E-211 | ||
| Phobius | 191 | 688 | 498 | - | – | |
| Gene3D | 216 | 396 | 181 | 1.7E-68 | – | |
| SUPERFAMILY | 221 | 466 | 246 | 3.52E-69 | ||
| CDD | 238 | 395 | 158 | 7.928E-27 | – | |
| SMART | 259 | 398 | 140 | 8.5E-25 | ||
| Pfam | 263 | 394 | 132 | 8.0E-45 | ||
| ProSitePatterns | 366 | 384 | 19 | - | ||
| Gene3D | 397 | 473 | 77 | 1.3E-25 | – | |
| Pfam | 418 | 460 | 43 | 3.5E-11 | ||
| Pfam | 477 | 665 | 189 | 2.7E-66 | ||
| Gene3D | 478 | 678 | 201 | 4.2E-64 | ||
| SUPERFAMILY | 478 | 674 | 197 | 4.32E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0021600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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