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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0228400 |
| Transcript ID | LotjaGi4g1v0228400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-associated protein; TAIR: AT4G24690.1 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; Swiss-Prot: sp|Q9SB64|NBR1_ARATH Protein NBR1 homolog; TrEMBL-Plants: tr|A0A0S3R6E3|A0A0S3R6E3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0228400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53818113..53822480) extracted from Lotus japonicus Gifu genome v1.2.
GCCACCAACAGAGTATAAATAAAACACTTCCGCTTGAGGGGAGCTTGTATAGCGGGTACACACTGAAACTACCGACTCTT TCTCCCTCTGATTTCTCATCCAAACAACAACAACAACACCCTTCTCCGATTAGGGTTAGGGTTTCCATCGCTTCCCTTCG TCGTTCGTCGCTTCCGTTCTCAGAGCTATGGAGTCTTCACTCGTGATTAAGGTTTCTCATCTCAATTTCCCTTGTCCCTT CCTATTTTCGTTGATTACTCGGCATCGAATCAGTTTCTATTAGGGTTGCGTGATCTGCTATGTTTGTTTAATCGATTAGG GTTTTGCATGGAAGATATGAAATTAATCGTTCTTGGTTTGTCATTTACTGTGATCAAATTGATTTTCAATTCGTAATTGA AATTTGTTATAACTGTGTGTATCCATTCTATTATCGCCTTTTGCATTTGTGTTTCGATAATCGGAACACGGTGTTGTAAT TTAAGCCCCTTCACATGCAGCGAGTATTCAGAAGACGAATGGAACTGAAACCCTAAACAATGCATTTTGTCAAATTTCAT CAACAATTATATTGTGTTGCTGTTACTGTATAATTTTTGACATAAAATGGCTTAACATGATTTTGGTTGAGTCTTGATTA GTGGTATTGTAATTTTGTAAGAGTTTTCTCATTGCATTACTTGTTCTTGTACAGGTGAAATATGGTGATACACTTCGGCG GTTTAATGCGCCTGTGGCTGAGAATAATAGGTTGGATCTTAACATGGCTGGGCTGAGGGCCAAGATATGTTCTATTTTCG ATTTCGCTGCTGATGCGAAGCTGATTTTGACATACGTTGATGAAGATGGTGACTCGGTGACTCTTGTGGATGATGAGGAC TTGCTTGATGTGATGAGGCAGAAATTGAAATTCTTGAAAATTGATGTGAAAATGGTTAATGACAATGTTGGTAATTCAAA TTTTGGGTCTAGTGGAAGTTCCACCCCTTTAAGATCTCCTCCTGTCTCAAACCCATTTGCTGGTGGAGATTTTGGTAAAG CTGATGTTTTTGATGCTTTGCCAGAGCCATTACGTGAGGCTCTTTGCTCATCACTTTCAAAAGCTGCCTCTTCAAGTCCA GTGCTGGCTACTCTTGCTGATTCAATTACCAAAATTGGACAGTCTATTCTAAATTCGCATCCCCAGCCTCATGTTGCAAC TGGTACAGGCTCAGCAAATAGTGTTCCTGAAGCCTCTGCCACTTCTGAAAAAACTCCTCAGCCTCCACATGTGGCCTCCG CTTCCAATGCAAGTGTCCATGCTAGTTCAAGTGGAAGTGCCACTCCGTTAAGCTCTCCTGTCCCAGTGACTCGTCCTAAA ATTGCCCTTAGTATGCAATCACCTAATAGGCAATCTCAACATGACATTTCAAGTCGACTGCGTGTTCTGGCTGACTTACA TGCCAAGAACTCTTCTGTGGCCAGTCAACAGGCGAGTGCACTTAATTTGCAAGGTCAAGCTCAAGTGCCTGCTAATCTCG CTGGCTTACTAAACAAGAACTCTTCTATTGCCGGGCAACAGGCGGGGGCTGGTAATGCACTTAATTTGCAAGCTCAAGCT GCAGCTTCAAATCAAGCGCGTGCTAATCTCGTTGACTTATTTACCAAGAACTCTTCTATTGCCCGTAAACTGGCGGGGGC TGGAAATGCAATTAGAGGTGGAGTGGCAGGAGTTGTAGGCCGGCCTTCGTTGTTGGACTTGGCTTCTAGTAGCCTACCTA GACATGTAGCGGTTGTCCCTGGCCCTGCCCCTGCCCCTGTTGATCTCAATACCCACCCATGTTTTCCTTCTTCATCTCAT TCAACCAATGTAAATAGTGCACCACTTTCGCCAGCTGGCTGTGGATGTAAAATGTGTACTGATGATAGTTTTGCTGGTAA AGGTGAATGTTGTGGGACATCCACAAGTTCTGGAGCTCCTAGAAACAGCTCAACCCAGACTACTGCGAATTGGTTTGGTC CTCCCATCCAATTTCCATTTTCTGGGACAAATACTTTTCATTCAGGGGCATCTCCTATAGGAAACTGTCCAGTTTCTTCC CTTCCTTCCTTTAAAAGGAGCCATAGTCACAATCAGGCTATGAGGGGTATGTTCCACAAGGGAGTCCGCTGTGATGGCTG TGGAGTCTATCCAATAACTGGGTCTCGTTTCAAATCCAAAGTGTAAGTACTTTATTTTATTTGGATACTAAGAAACAGCA TCCAGAGGTATTTGGATCACATTTTCTGTATCTTTTTATGCAGGAAAGAAAATTATGACCTCTGCATCATTTGCTTCAAC GAAATGGGTAATAAGGCTGATTATATCAGAATGGACCGTCCTGAATCTGCTTTGGCTGGCCCACGACGCACAAATGAACA TACAAAAAAAATTGTAACCTTCTTTGAACACTATCATCTCTTTTCTTCCTTTGTGACTTGACGTGCATTTACACCCTTGT CTTTCATTGTGCAGCAAACTATTCCACCATGTCTTAATAGACGTGCACGGCCAAAGCTAGACAGTCGGTTCATTTTGGAT GTTAATATCATAGATGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGTATGCGAAACAATGGCACTTC AGTGTGGCCCAAGGGAACTGAACTTGTTTGGATTGGAGGAGATGAGTTTTGTGATTCTACTGCAGTTAAATTAGAGGTTT GCTAAATATTTGTGTTGTAATGTAATCATTTATTTAAATTCATTAGGCATACTTTGGTTGTTCTTGAATCTGTAGTACAC TAGTCAAGCTAGCGCTCCATATAATATTTTGATTAAACATCACAGGCTCCTGAGGATGGCGTACCTGTGGGGAATGAGAT TGATATTGCAGTTGATTTTAGAGCACCTCAGTTACCTGGTCGATATATATCACACTGGAGGATGGCATCCCCCTCCGGCC ATGAATTTGGCCAGTGTGTTTGGGTCCTTATACAGGTAAAATGAGTGTTTTAGGTTTCCCTCCCTTGCACATTGGGCGTG GACACTCGCATTAATAATAATGGTTTAGTAACATTCTTACTCTCTCTTGCAATATCATACTTGCAGGTTGATGCTTCTGT CATGGACACAACTTCTGATAGCTCTCAAAACCTGAACTTGAATATTCCTCTTGATGTCAGCAGCTCCAAAGGGCCTCAGA GTATAGATATCAATGCTCAACCTATTGAAGATGATGCTTCTTTTCAACAATACAATCCTAGTGCTCCCACTGAACCTGCT GAACCTGTGAATCAAATGGCTGATGTGAATCAAATGGTTGATGAGGAACCAAGGCAGGAGAAGTCAGTAGACGAATTCGC TGAAAATGTAGACGCATTTGTTGACCCTGCTGCCTCACCTCCTGCAACTTCTGCAGTACCTTCATATCTTCCCTATCCGA ATGTTGATATTGACATGGCTGAAACAGTGTCCCTGCCTGGTCCTATTCAGCAAACCTCAGCCGCGGATGCCCCGTCTTCA TCTATTGGGATTGGTGGAAATAATCCTGTGGAAGAGGCTCTTCTCAAAGAGCTAGATGAAATGGGGTTTAAGCAGGTTGA TTTGAACAAAGAGATTTTAAGGAACAATGGCTACAATCTGGAGCAGGCAATAGTTGATCTCTGCGATGAATCTGGATGGG ATCCTATCCTTGAAGAGTTAAAGGAGATGGTATATTGTTTCTGCACTGGATTGTTTTTTTATTATTATTTGGTTTGGTTG ATGATGTATTTTTTTAATCAATTTGTTTTTATTGTTGGATTGAATGCAGGGTTTCGGAGATGATGACAAAAATAAGAAGC TGCTGATGAAAAACAATGGAAGCATCATGGGTGTTGTTATGGATTTAATAAGCAAGGAGTAGGATTGGTTATAATGTTTA TGTTGGTGAAACATGTTCTGAGGATGCAAAATATATTCGCCTAGTACTCTAGATAATTGTCTAATTTCCTTTCTCGATCT TGTATTGATCGATGTTATGTTGGATTTTAATTATGATTCGAAACTGCCTACACTACAATACTACATATATGTACATTATT ATGTTTTATATTGCTGCAACGTTGTGGTTTATAAGTTTTGGCCTTATTTTTAATTTAACGTAACAAGCCTTTTTGGCCTT ATCATGATATGCATTAGTACTTGAAGAGTTGAGGTACATAAATGAGCTGTTTACAAATCAATGAGTGGAGTCTGACAATA ATGTTGAAGAAATTAACATTTGATAGTTCGCGCCACATTCTTGAAACATAATTGAAAGTCCTGAGATGCCTGAATTTTAT TGATGGTAAGCAAGAGTGAAGGGCATTGGGCAACAAGTTACAACTGGT
CDS sequence (LotjaGi4g1v0228400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTTCACTCGTGATTAAGGTGAAATATGGTGATACACTTCGGCGGTTTAATGCGCCTGTGGCTGAGAATAATAG GTTGGATCTTAACATGGCTGGGCTGAGGGCCAAGATATGTTCTATTTTCGATTTCGCTGCTGATGCGAAGCTGATTTTGA CATACGTTGATGAAGATGGTGACTCGGTGACTCTTGTGGATGATGAGGACTTGCTTGATGTGATGAGGCAGAAATTGAAA TTCTTGAAAATTGATGTGAAAATGGTTAATGACAATGTTGGTAATTCAAATTTTGGGTCTAGTGGAAGTTCCACCCCTTT AAGATCTCCTCCTGTCTCAAACCCATTTGCTGGTGGAGATTTTGGTAAAGCTGATGTTTTTGATGCTTTGCCAGAGCCAT TACGTGAGGCTCTTTGCTCATCACTTTCAAAAGCTGCCTCTTCAAGTCCAGTGCTGGCTACTCTTGCTGATTCAATTACC AAAATTGGACAGTCTATTCTAAATTCGCATCCCCAGCCTCATGTTGCAACTGGTACAGGCTCAGCAAATAGTGTTCCTGA AGCCTCTGCCACTTCTGAAAAAACTCCTCAGCCTCCACATGTGGCCTCCGCTTCCAATGCAAGTGTCCATGCTAGTTCAA GTGGAAGTGCCACTCCGTTAAGCTCTCCTGTCCCAGTGACTCGTCCTAAAATTGCCCTTAGTATGCAATCACCTAATAGG CAATCTCAACATGACATTTCAAGTCGACTGCGTGTTCTGGCTGACTTACATGCCAAGAACTCTTCTGTGGCCAGTCAACA GGCGAGTGCACTTAATTTGCAAGGTCAAGCTCAAGTGCCTGCTAATCTCGCTGGCTTACTAAACAAGAACTCTTCTATTG CCGGGCAACAGGCGGGGGCTGGTAATGCACTTAATTTGCAAGCTCAAGCTGCAGCTTCAAATCAAGCGCGTGCTAATCTC GTTGACTTATTTACCAAGAACTCTTCTATTGCCCGTAAACTGGCGGGGGCTGGAAATGCAATTAGAGGTGGAGTGGCAGG AGTTGTAGGCCGGCCTTCGTTGTTGGACTTGGCTTCTAGTAGCCTACCTAGACATGTAGCGGTTGTCCCTGGCCCTGCCC CTGCCCCTGTTGATCTCAATACCCACCCATGTTTTCCTTCTTCATCTCATTCAACCAATGTAAATAGTGCACCACTTTCG CCAGCTGGCTGTGGATGTAAAATGTGTACTGATGATAGTTTTGCTGGTAAAGGTGAATGTTGTGGGACATCCACAAGTTC TGGAGCTCCTAGAAACAGCTCAACCCAGACTACTGCGAATTGGTTTGGTCCTCCCATCCAATTTCCATTTTCTGGGACAA ATACTTTTCATTCAGGGGCATCTCCTATAGGAAACTGTCCAGTTTCTTCCCTTCCTTCCTTTAAAAGGAGCCATAGTCAC AATCAGGCTATGAGGGGTATGTTCCACAAGGGAGTCCGCTGTGATGGCTGTGGAGTCTATCCAATAACTGGGTCTCGTTT CAAATCCAAAGTGAAAGAAAATTATGACCTCTGCATCATTTGCTTCAACGAAATGGGTAATAAGGCTGATTATATCAGAA TGGACCGTCCTGAATCTGCTTTGGCTGGCCCACGACGCACAAATGAACATACAAAAAAAATTCAAACTATTCCACCATGT CTTAATAGACGTGCACGGCCAAAGCTAGACAGTCGGTTCATTTTGGATGTTAATATCATAGATGGTACAATGATGGCTCC ATCTACTGCATTTACAAAGATCTGGCGTATGCGAAACAATGGCACTTCAGTGTGGCCCAAGGGAACTGAACTTGTTTGGA TTGGAGGAGATGAGTTTTGTGATTCTACTGCAGTTAAATTAGAGGCTCCTGAGGATGGCGTACCTGTGGGGAATGAGATT GATATTGCAGTTGATTTTAGAGCACCTCAGTTACCTGGTCGATATATATCACACTGGAGGATGGCATCCCCCTCCGGCCA TGAATTTGGCCAGTGTGTTTGGGTCCTTATACAGGTTGATGCTTCTGTCATGGACACAACTTCTGATAGCTCTCAAAACC TGAACTTGAATATTCCTCTTGATGTCAGCAGCTCCAAAGGGCCTCAGAGTATAGATATCAATGCTCAACCTATTGAAGAT GATGCTTCTTTTCAACAATACAATCCTAGTGCTCCCACTGAACCTGCTGAACCTGTGAATCAAATGGCTGATGTGAATCA AATGGTTGATGAGGAACCAAGGCAGGAGAAGTCAGTAGACGAATTCGCTGAAAATGTAGACGCATTTGTTGACCCTGCTG CCTCACCTCCTGCAACTTCTGCAGTACCTTCATATCTTCCCTATCCGAATGTTGATATTGACATGGCTGAAACAGTGTCC CTGCCTGGTCCTATTCAGCAAACCTCAGCCGCGGATGCCCCGTCTTCATCTATTGGGATTGGTGGAAATAATCCTGTGGA AGAGGCTCTTCTCAAAGAGCTAGATGAAATGGGGTTTAAGCAGGTTGATTTGAACAAAGAGATTTTAAGGAACAATGGCT ACAATCTGGAGCAGGCAATAGTTGATCTCTGCGATGAATCTGGATGGGATCCTATCCTTGAAGAGTTAAAGGAGATGGGT TTCGGAGATGATGACAAAAATAAGAAGCTGCTGATGAAAAACAATGGAAGCATCATGGGTGTTGTTATGGATTTAATAAG CAAGGAGTAG
Protein sequence (LotjaGi4g1v0228400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDGDSVTLVDDEDLLDVMRQKLK FLKIDVKMVNDNVGNSNFGSSGSSTPLRSPPVSNPFAGGDFGKADVFDALPEPLREALCSSLSKAASSSPVLATLADSIT KIGQSILNSHPQPHVATGTGSANSVPEASATSEKTPQPPHVASASNASVHASSSGSATPLSSPVPVTRPKIALSMQSPNR QSQHDISSRLRVLADLHAKNSSVASQQASALNLQGQAQVPANLAGLLNKNSSIAGQQAGAGNALNLQAQAAASNQARANL VDLFTKNSSIARKLAGAGNAIRGGVAGVVGRPSLLDLASSSLPRHVAVVPGPAPAPVDLNTHPCFPSSSHSTNVNSAPLS PAGCGCKMCTDDSFAGKGECCGTSTSSGAPRNSSTQTTANWFGPPIQFPFSGTNTFHSGASPIGNCPVSSLPSFKRSHSH NQAMRGMFHKGVRCDGCGVYPITGSRFKSKVKENYDLCIICFNEMGNKADYIRMDRPESALAGPRRTNEHTKKIQTIPPC LNRRARPKLDSRFILDVNIIDGTMMAPSTAFTKIWRMRNNGTSVWPKGTELVWIGGDEFCDSTAVKLEAPEDGVPVGNEI DIAVDFRAPQLPGRYISHWRMASPSGHEFGQCVWVLIQVDASVMDTTSDSSQNLNLNIPLDVSSSKGPQSIDINAQPIED DASFQQYNPSAPTEPAEPVNQMADVNQMVDEEPRQEKSVDEFAENVDAFVDPAASPPATSAVPSYLPYPNVDIDMAETVS LPGPIQQTSAADAPSSSIGIGGNNPVEEALLKELDEMGFKQVDLNKEILRNNGYNLEQAIVDLCDESGWDPILEELKEMG FGDDDKNKKLLMKNNGSIMGVVMDLISKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 909 | 909 | 1.5E-199 | – | |
| PANTHER | 1 | 909 | 909 | 1.5E-199 | – | |
| Gene3D | 3 | 88 | 86 | 3.5E-11 | – | |
| SMART | 4 | 89 | 86 | 1.1E-7 | ||
| ProSiteProfiles | 4 | 84 | 81 | 12.24 | ||
| SUPERFAMILY | 4 | 77 | 74 | 5.89E-13 | – | |
| CDD | 5 | 91 | 87 | 5.90189E-34 | – | |
| Pfam | 6 | 77 | 72 | 2.3E-8 | ||
| MobiDBLite | 168 | 226 | 59 | - | – | |
| MobiDBLite | 168 | 223 | 56 | - | – | |
| SUPERFAMILY | 478 | 541 | 64 | 1.0E-13 | – | |
| Gene3D | 481 | 534 | 54 | 1.5E-9 | ||
| ProSiteProfiles | 488 | 535 | 48 | 11.713 | ||
| SMART | 488 | 533 | 46 | 2.2E-5 | ||
| Pfam | 489 | 526 | 38 | 1.9E-9 | ||
| Gene3D | 563 | 685 | 123 | 2.7E-35 | ||
| CDD | 567 | 680 | 114 | 4.87537E-48 | ||
| Pfam | 578 | 679 | 102 | 9.6E-31 | ||
| Gene3D | 819 | 866 | 48 | 9.2E-16 | – | |
| ProSiteProfiles | 825 | 866 | 42 | 9.246 | ||
| CDD | 826 | 864 | 39 | 1.58111E-11 | – | |
| Gene3D | 867 | 908 | 42 | 1.1E-13 | – | |
| CDD | 869 | 906 | 38 | 8.41586E-14 | – | |
| SUPERFAMILY | 869 | 906 | 38 | 7.66E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0228400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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