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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0242400 |
| Transcript ID | LotjaGi6g1v0242400.10 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT2G30950.4 FtsH extracellular protease family; Swiss-Prot: sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; TrEMBL-Plants: tr|A0A0S3RI72|A0A0S3RI72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0242400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55464067..55466938) extracted from Lotus japonicus Gifu genome v1.2.
TGCTGGTCTTTTGAATACCAGGGAATTGGTCTAGTTTTCATATCATACTTTCAATCAAATTTAGTATTTCTTCTCTATCA CTGCTGGTATCTATCATGAATTCATGATCAGTGTTTAATAACTAAAATTTAGAATGATTTTCTTGATACAGATGGCGGCG GCATCATTGTCATGTCTTGTTGGGAGTAGTTTATCTACGCCGAGTAATAAATTAACTCTTGCCAAGGGTGTAAATGGGAG ACAACTCTTCTTATTTCAGAGACTTTCATCATTGAGTATGGAGTCAAAAACAGTGCTTGTAAAGGCATCCTTGGATCAAA GGAAACATGAAGGGAGAAGAAAGTTTCTGAAACTGTTGAATGTGGGAGTTGGCTTACCTGCATTATTAGGAAATGGGAAA GCTTATGCGGATGAGCAGGGGATTTCTCCCTCCAAAATGTCTTATTCTCAGTTTCTTGAGTATTTGGATAAGGATAGAGT TAAAAAAGTGGATCTGTTTGAGAATGGAACTATAGCTATTGTAGAGGCTCTTTCTCTTGATAATAGGGCGCTGCGAATGC GAGTTCAACTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAACTCAGGGAAAAGAACATTGACTTTGCAGCTCATAATGCC CAAGAAGAGTCGGATTCTCTGTTATTTAACCTGATTGGGAATCTGGCTTTCCCTCTAATCTTGATTGGAGGATTGTTCCT TTTGTCAAGACGATCATCAGGAGGGATGGGAGGTCCTGGTGGGCCTGGCTTTCCTCTTGCTTTTGGTCAGTCTAAAGCCA AATTTCAAATGGAACCAAATACTGGTGTGACATTTGATGATGTTGCCGGGGTAGATGAAGCCAAGCAGGATTTTATGGAG GTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGAGCTCGCATACCAAAAGGAGTTCTTCTTATTGGTCC TCCAGGGACTGGGAAGACGCTATTAGCCAAGGCTATTGCTGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTG AGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGAGTTCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCCTGC ATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTGCTGGAATTGGCGGAGGAAATGATGAAAGAGAACA GACCCTGAACCAACTTCTGACAGAAATGGACGGGTTTGAGGGTAATACTGGTATCATAGTCGTTGCAGCAACTAACAGGC CAGACATTCTGGACTCTGCTTTATTGCGACCAGGACGGTTTGATAGACAAGTAAGTTTATACTAGGAAATAAATATTGCA TAGATTTTTGTGTTCATCACTGAACATAATGTGTTTGCAGGTCTCAGTTGATGTCCCAGATATACGGGGAAGGACTGAAA TCCTAAAGGTTCACGCGAGCAATAAAAAGTTTGATGCTGATGTTTCTCTTGAGGTAATTGCAATGAGAACACCTGGTTTT AGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAAACGGCAATTGCATCCAA AGAGATCGATGATTCTATTGATAGGATTGTTGCTGGAATGGAAGGGACAGTGATGACAGATGGAAAGAGCAAAAGTCTAG TTGCATATCATGAAGTTGGGCATGCCATTTGTGGGTAAGCCAGAACCTAGGCTGTAGTTTTGTCTTTCAAGCAATAGTTG TATAAGAATGCTGTGGAAGCTAGATGTATTTGCCTTCACGAGTTCATTTTAAGCCCTTGTATATGAGTCGAATCCACAAA AAAATAATGGCCCACATTTAGAAGCTGTTTTAACTAGTAGTTCTGAAATATCTTTATGTACTTGCAGAACTTTGACTCCC GGTCACGATGCTGTACAAAAGGTAACCCTAGTTCCTCGTGGGCAAGCTCGGGGTCTTACTTGGTTTATTCCTTCAGATGA CCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAAATTATTT TTGGCGAGCCTGAGGTTACAACTGGAGCAGCTGGCGATTTGCAGCAAATAACCGGCTTGGCCAAACAGGTCCTTGTTCAT TTTCTGTTGTATTGTATTACAACGCCCTTATTTTTTATTTTTTTTTGGGTGGGGATAAATGCTATTAGTAATTTAGACAC TACGGAATTGCTAATCTAATCTCAATTTGGTTATACTTTTTTAGGACATTGGGTGTTTTTTGTAGCTCCAATTAATAGGT GAGACATGAAATGAGATCAGATCATGCCAAAAGATTTCTTTAATGTTTGAAAGTTGAAACTAGTAGTATTTTGCTTTAAC TGAAAAATGATATTTTTCATTTTGAAGGAAGGGGTTTTAGTTTCCATTATTGATAGATATTTGTTTTTCCTCCTTGACCT TCTGATTACAACTGTGTGGGCTTCAATAAATGTGAATGATACTCTTGCAGATGGTAACCACGTTTGGAATGTCTGATATT GGTCCTTGGTCACTTATGGACACATCAGCTCAGAGTGGTGATGTCATCATGAGAATGATGGCAAGAAACTCGATGTCAGA AAGGCTTGCCGAAGACATTGATGCTGCTGTCAAGAGGATCTCAGATGAAGCGTATGAAATCGCACTGAAGCATATAAGGA ACAACCGTGAAGCCATGGATAAGATTGTGGAGGTCTTACTGGAGAAGGAGACAATGACTGGAGATGAATTCCGAGCTCTC CTGTCCGAGTTTGTTGAAATTCCAGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACCAGTTGCTGTTTGA
CDS sequence (LotjaGi6g1v0242400.10) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTCTTGATACAGATGGCGGCGGCATCATTGTCATGTCTTGTTGGGAGTAGTTTATCTACGCCGAGTAATAAATT AACTCTTGCCAAGGGTGTAAATGGGAGACAACTCTTCTTATTTCAGAGACTTTCATCATTGAGTATGGAGTCAAAAACAG TGCTTGTAAAGGCATCCTTGGATCAAAGGAAACATGAAGGGAGAAGAAAGTTTCTGAAACTGTTGAATGTGGGAGTTGGC TTACCTGCATTATTAGGAAATGGGAAAGCTTATGCGGATGAGCAGGGGATTTCTCCCTCCAAAATGTCTTATTCTCAGTT TCTTGAGTATTTGGATAAGGATAGAGTTAAAAAAGTGGATCTGTTTGAGAATGGAACTATAGCTATTGTAGAGGCTCTTT CTCTTGATAATAGGGCGCTGCGAATGCGAGTTCAACTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAACTCAGGGAAAAG AACATTGACTTTGCAGCTCATAATGCCCAAGAAGAGTCGGATTCTCTGTTATTTAACCTGATTGGGAATCTGGCTTTCCC TCTAATCTTGATTGGAGGATTGTTCCTTTTGTCAAGACGATCATCAGGAGGGATGGGAGGTCCTGGTGGGCCTGGCTTTC CTCTTGCTTTTGGTCAGTCTAAAGCCAAATTTCAAATGGAACCAAATACTGGTGTGACATTTGATGATGTTGCCGGGGTA GATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGAGCTCGCAT ACCAAAAGGAGTTCTTCTTATTGGTCCTCCAGGGACTGGGAAGACGCTATTAGCCAAGGCTATTGCTGGTGAAGCAGGTG TCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGAGTTCGTGATTTATTC AAGAAGGCCAAAGAGAATGCTCCCTGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTGCTGGAAT TGGCGGAGGAAATGATGAAAGAGAACAGACCCTGAACCAACTTCTGACAGAAATGGACGGGTTTGAGGGTAATACTGGTA TCATAGTCGTTGCAGCAACTAACAGGCCAGACATTCTGGACTCTGCTTTATTGCGACCAGGACGGTTTGATAGACAAGTC TCAGTTGATGTCCCAGATATACGGGGAAGGACTGAAATCCTAAAGGTTCACGCGAGCAATAAAAAGTTTGATGCTGATGT TTCTCTTGAGGTAATTGCAATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATAT TAGCTGGTCGGCGTGGAAAAACGGCAATTGCATCCAAAGAGATCGATGATTCTATTGATAGGATTGTTGCTGGAATGGAA GGGACAGTGATGACAGATGGAAAGAGCAAAAGTCTAGTTGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGAC TCCCGGTCACGATGCTGTACAAAAGGTAACCCTAGTTCCTCGTGGGCAAGCTCGGGGTCTTACTTGGTTTATTCCTTCAG ATGACCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAAATT ATTTTTGGCGAGCCTGAGGTTACAACTGGAGCAGCTGGCGATTTGCAGCAAATAACCGGCTTGGCCAAACAGATGGTAAC CACGTTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACACATCAGCTCAGAGTGGTGATGTCATCATGAGAATGA TGGCAAGAAACTCGATGTCAGAAAGGCTTGCCGAAGACATTGATGCTGCTGTCAAGAGGATCTCAGATGAAGCGTATGAA ATCGCACTGAAGCATATAAGGAACAACCGTGAAGCCATGGATAAGATTGTGGAGGTCTTACTGGAGAAGGAGACAATGAC TGGAGATGAATTCCGAGCTCTCCTGTCCGAGTTTGTTGAAATTCCAGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCAC CAGTTGCTGTTTGA
Protein sequence (LotjaGi6g1v0242400.10) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFLIQMAAASLSCLVGSSLSTPSNKLTLAKGVNGRQLFLFQRLSSLSMESKTVLVKASLDQRKHEGRRKFLKLLNVGVG LPALLGNGKAYADEQGISPSKMSYSQFLEYLDKDRVKKVDLFENGTIAIVEALSLDNRALRMRVQLPGLSQELLQKLREK NIDFAAHNAQEESDSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGV DEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLF KKAKENAPCIVFVDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRPDILDSALLRPGRFDRQV SVDVPDIRGRTEILKVHASNKKFDADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIASKEIDDSIDRIVAGME GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEI IFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMDTSAQSGDVIMRMMARNSMSERLAEDIDAAVKRISDEAYE IALKHIRNNREAMDKIVEVLLEKETMTGDEFRALLSEFVEIPAENRVPPSTPSPVAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| Hamap | 1 | 686 | 686 | 35.505 | ||
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 8 | 697 | 690 | 0.0 | – | |
| Phobius | 8 | 16 | 9 | - | – | |
| PANTHER | 8 | 697 | 690 | 0.0 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 175 | 154 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 176 | 197 | 22 | - | – | |
| TIGRFAM | 180 | 675 | 496 | 1.7E-213 | ||
| Phobius | 198 | 697 | 500 | - | – | |
| Gene3D | 224 | 404 | 181 | 4.5E-69 | – | |
| SUPERFAMILY | 229 | 474 | 246 | 3.21E-70 | ||
| CDD | 246 | 403 | 158 | 1.34117E-27 | – | |
| SMART | 267 | 406 | 140 | 3.3E-24 | ||
| Pfam | 271 | 402 | 132 | 6.8E-45 | ||
| ProSitePatterns | 374 | 392 | 19 | - | ||
| Gene3D | 405 | 481 | 77 | 5.5E-27 | – | |
| Pfam | 426 | 468 | 43 | 1.4E-11 | ||
| Pfam | 485 | 673 | 189 | 2.7E-68 | ||
| SUPERFAMILY | 486 | 682 | 197 | 2.62E-64 | ||
| Gene3D | 486 | 686 | 201 | 3.2E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0242400.10, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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