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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0242400 |
| Transcript ID | LotjaGi6g1v0242400.9 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT2G30950.4 FtsH extracellular protease family; Swiss-Prot: sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; TrEMBL-Plants: tr|A0A0S3RI72|A0A0S3RI72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0242400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55463877..55466799) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTGATACAGATGGCGGCGGCATCATTGTCATGTCTTGTTGGGAGTAGTTTATCTACGCCGAGTAATAAATTAACTCT TGCCAAGGGTGTAAATGGGAGACAACTCTTCTTATTTCAGAGACTTTCATCATTGAGTATGGAGTCAAAAACAGTGCTTG TAAAGGCATCCTTGGATCAAAGGAAACATGAAGGGAGAAGAAAGTTTCTGAAACTGTTGAATGTGGGAGTTGGCTTACCT GCATTATTAGGAAATGGGAAAGCTTATGCGGATGAGCAGGGGATTTCTCCCTCCAAAATGTCTTATTCTCAGTTTCTTGA GTATTTGGATAAGGATAGAGTTAAAAAAGTGGATCTGTTTGAGAATGGAACTATAGCTATTGTAGAGGCTCTTTCTCTTG ATAATAGGGCGCTGCGAATGCGAGTTCAACTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAACTCAGGGAAAAGAACATT GACTTTGCAGCTCATAATGCCCAAGAAGAGTCGGATTCTCTGTTATTTAACCTGATTGGGAATCTGGCTTTCCCTCTAAT CTTGATTGGAGGATTGTTCCTTTTGTCAAGACGATCATCAGGAGGGATGGGAGGTCCTGGTGGGCCTGGCTTTCCTCTTG CTTTTGGTCAGTCTAAAGCCAAATTTCAAATGGAACCAAATACTGGTGTGACATTTGATGATGTTGCCGGGGTAGATGAA GCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGAGCTCGCATACCAAA AGGAGTTCTTCTTATTGGTCCTCCAGGGACTGGGAAGACGCTATTAGCCAAGGCTATTGCTGGTGAAGCAGGTGTCCCAT TTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGAGTTCGTGATTTATTCAAGAAG GCCAAAGAGAATGCTCCCTGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTGCTGGAATTGGCGG AGGAAATGATGAAAGAGAACAGACCCTGAACCAACTTCTGACAGAAATGGACGGGTTTGAGGGTAATACTGGTATCATAG TCGTTGCAGCAACTAACAGGCCAGACATTCTGGACTCTGCTTTATTGCGACCAGGACGGTTTGATAGACAAGTAAGTTTA TACTAGGAAATAAATATTGCATAGATTTTTGTGTTCATCACTGAACATAATGTGTTTGCAGGTCTCAGTTGATGTCCCAG ATATACGGGGAAGGACTGAAATCCTAAAGGTTCACGCGAGCAATAAAAAGTTTGATGCTGATGTTTCTCTTGAGGTAATT GCAATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGG AAAAACGGCAATTGCATCCAAAGAGATCGATGATTCTATTGATAGGATTGTTGCTGGAATGGAAGGGACAGTGATGACAG ATGGAAAGAGCAAAAGTCTAGTTGCATATCATGAAGTTGGGCATGCCATTTGTGGGTAAGCCAGAACCTAGGCTGTAGTT TTGTCTTTCAAGCAATAGTTGTATAAGAATGCTGTGGAAGCTAGATGTATTTGCCTTCACGAGTTCATTTTAAGCCCTTG TATATGAGTCGAATCCACAAAAAAATAATGGCCCACATTTAGAAGCTGTTTTAACTAGTAGTTCTGAAATATCTTTATGT ACTTGCAGAACTTTGACTCCCGGTCACGATGCTGTACAAAAGGTAACCCTAGTTCCTCGTGGGCAAGCTCGGGGTCTTAC TTGGTTTATTCCTTCAGATGACCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGCA GAGCAGCAGAGGAAATTATTTTTGGCGAGCCTGAGGTTACAACTGGAGCAGCTGGCGATTTGCAGCAAATAACCGGCTTG GCCAAACAGGTCCTTGTTCATTTTCTGTTGTATTGTATTACAACGCCCTTATTTTTTATTTTTTTTTGGGTGGGGATAAA TGCTATTAGTAATTTAGACACTACGGAATTGCTAATCTAATCTCAATTTGGTTATACTTTTTTAGGACATTGGGTGTTTT TTGTAGCTCCAATTAATAGGTGAGACATGAAATGAGATCAGATCATGCCAAAAGATTTCTTTAATGTTTGAAAGTTGAAA CTAGTAGTATTTTGCTTTAACTGAAAAATGATATTTTTCATTTTGAAGGAAGGGGTTTTAGTTTCCATTATTGATAGATA TTTGTTTTTCCTCCTTGACCTTCTGATTACAACTGTGTGGGCTTCAATAAATGTGAATGATACTCTTGCAGATGGTAACC ACGTTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACACATCAGCTCAGAGTGGTGATGTCATCATGAGAATGAT GGCAAGAAACTCGATGTCAGAAAGGCTTGCCGAAGACATTGATGCTGCTGTCAAGAGGATCTCAGATGAAGCGTATGAAA TCGCACTGAAGCATATAAGGAACAACCGTGAAGCCATGGATAAGATTGTGGAGGTCTTACTGGAGAAGGAGACAATGACT GGAGATGAATTCCGAGCTCTCCTGTCCGAGTTTGTTGAAATTCCAGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACC AGTTGCTGTTTGAATAGCCTCTATGTCACACTGTAATGTAGTATATAGCTCTCTCCATATTCAATTTTCTGAAGTTGTAA AATATTTGTAACATAACCTTCACTCCAAAGTTTTTAATGAGAAAAGATCTAGCTTGTTATTTTATTATTGGCTATGCAAT GCAATTATGCTAGGAGCATGGTGGCATGATAGTTGGATTGTGA
CDS sequence (LotjaGi6g1v0242400.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGGCATCATTGTCATGTCTTGTTGGGAGTAGTTTATCTACGCCGAGTAATAAATTAACTCTTGCCAAGGGTGT AAATGGGAGACAACTCTTCTTATTTCAGAGACTTTCATCATTGAGTATGGAGTCAAAAACAGTGCTTGTAAAGGCATCCT TGGATCAAAGGAAACATGAAGGGAGAAGAAAGTTTCTGAAACTGTTGAATGTGGGAGTTGGCTTACCTGCATTATTAGGA AATGGGAAAGCTTATGCGGATGAGCAGGGGATTTCTCCCTCCAAAATGTCTTATTCTCAGTTTCTTGAGTATTTGGATAA GGATAGAGTTAAAAAAGTGGATCTGTTTGAGAATGGAACTATAGCTATTGTAGAGGCTCTTTCTCTTGATAATAGGGCGC TGCGAATGCGAGTTCAACTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAACTCAGGGAAAAGAACATTGACTTTGCAGCT CATAATGCCCAAGAAGAGTCGGATTCTCTGTTATTTAACCTGATTGGGAATCTGGCTTTCCCTCTAATCTTGATTGGAGG ATTGTTCCTTTTGTCAAGACGATCATCAGGAGGGATGGGAGGTCCTGGTGGGCCTGGCTTTCCTCTTGCTTTTGGTCAGT CTAAAGCCAAATTTCAAATGGAACCAAATACTGGTGTGACATTTGATGATGTTGCCGGGGTAGATGAAGCCAAGCAGGAT TTTATGGAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGAGCTCGCATACCAAAAGGAGTTCTTCT TATTGGTCCTCCAGGGACTGGGAAGACGCTATTAGCCAAGGCTATTGCTGGTGAAGCAGGTGTCCCATTTTTCTCAATCT CAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGAGTTCGTGATTTATTCAAGAAGGCCAAAGAGAAT GCTCCCTGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTGCTGGAATTGGCGGAGGAAATGATGA AAGAGAACAGACCCTGAACCAACTTCTGACAGAAATGGACGGGTTTGAGGGTAATACTGGTATCATAGTCGTTGCAGCAA CTAACAGGCCAGACATTCTGGACTCTGCTTTATTGCGACCAGGACGGTTTGATAGACAAGTCTCAGTTGATGTCCCAGAT ATACGGGGAAGGACTGAAATCCTAAAGGTTCACGCGAGCAATAAAAAGTTTGATGCTGATGTTTCTCTTGAGGTAATTGC AATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAA AAACGGCAATTGCATCCAAAGAGATCGATGATTCTATTGATAGGATTGTTGCTGGAATGGAAGGGACAGTGATGACAGAT GGAAAGAGCAAAAGTCTAGTTGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACTCCCGGTCACGATGCTGT ACAAAAGGTAACCCTAGTTCCTCGTGGGCAAGCTCGGGGTCTTACTTGGTTTATTCCTTCAGATGACCCAACTCTGATCT CCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAAATTATTTTTGGCGAGCCTGAG GTTACAACTGGAGCAGCTGGCGATTTGCAGCAAATAACCGGCTTGGCCAAACAGATGGTAACCACGTTTGGAATGTCTGA TATTGGTCCTTGGTCACTTATGGACACATCAGCTCAGAGTGGTGATGTCATCATGAGAATGATGGCAAGAAACTCGATGT CAGAAAGGCTTGCCGAAGACATTGATGCTGCTGTCAAGAGGATCTCAGATGAAGCGTATGAAATCGCACTGAAGCATATA AGGAACAACCGTGAAGCCATGGATAAGATTGTGGAGGTCTTACTGGAGAAGGAGACAATGACTGGAGATGAATTCCGAGC TCTCCTGTCCGAGTTTGTTGAAATTCCAGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACCAGTTGCTGAGCATGGTG GCATGATAGTTGGATTGTGA
Protein sequence (LotjaGi6g1v0242400.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAASLSCLVGSSLSTPSNKLTLAKGVNGRQLFLFQRLSSLSMESKTVLVKASLDQRKHEGRRKFLKLLNVGVGLPALLG NGKAYADEQGISPSKMSYSQFLEYLDKDRVKKVDLFENGTIAIVEALSLDNRALRMRVQLPGLSQELLQKLREKNIDFAA HNAQEESDSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQD FMEVVEFLKKPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKEN APCIVFVDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRPDILDSALLRPGRFDRQVSVDVPD IRGRTEILKVHASNKKFDADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIASKEIDDSIDRIVAGMEGTVMTD GKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPE VTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMDTSAQSGDVIMRMMARNSMSERLAEDIDAAVKRISDEAYEIALKHI RNNREAMDKIVEVLLEKETMTGDEFRALLSEFVEIPAENRVPPSTPSPVAEHGGMIVGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 2 | 689 | 688 | 0.0 | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| PANTHER | 2 | 689 | 688 | 0.0 | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| Phobius | 16 | 169 | 154 | - | – | |
| Hamap | 31 | 680 | 650 | 35.454 | ||
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 170 | 191 | 22 | - | – | |
| TIGRFAM | 174 | 669 | 496 | 1.7E-213 | ||
| Phobius | 192 | 699 | 508 | - | – | |
| Gene3D | 218 | 398 | 181 | 4.6E-69 | – | |
| SUPERFAMILY | 223 | 468 | 246 | 3.21E-70 | ||
| CDD | 240 | 397 | 158 | 1.11972E-27 | – | |
| SMART | 261 | 400 | 140 | 3.3E-24 | ||
| Pfam | 265 | 396 | 132 | 6.8E-45 | ||
| ProSitePatterns | 368 | 386 | 19 | - | ||
| Gene3D | 399 | 475 | 77 | 5.5E-27 | – | |
| Pfam | 420 | 462 | 43 | 1.4E-11 | ||
| Pfam | 479 | 667 | 189 | 2.7E-68 | ||
| SUPERFAMILY | 480 | 676 | 197 | 2.62E-64 | ||
| Gene3D | 480 | 680 | 201 | 3.2E-65 | ||
| MobiDBLite | 679 | 699 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0242400.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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